RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DNAH8Q96JB1 4490 aa3.35□□□□□ -1.87
LIMCH1-201ENST00000313860 DNAH9Q9NYC9 4486 aa3.35□□□□□ -1.87
LIMCH1-201ENST00000313860 LCE3AQ5TA76 89 aa3.34□□□□□ -1.87
LIMCH1-201ENST00000313860 KRTAP17-1Q9BYP8 105 aa3.34□□□□□ -1.87
LIMCH1-201ENST00000313860 FBN3Q75N90 2809 aa3.31□□□□□ -1.88
LIMCH1-201ENST00000313860 KRTAP3-1Q9BYR8 98 aa3.31□□□□□ -1.88
LIMCH1-201ENST00000313860 DNAH17Q9UFH2 4485 aa3.28□□□□□ -1.88
LIMCH1-201ENST00000313860 DNAH3Q8TD57 4116 aa3.25□□□□□ -1.89
LIMCH1-201ENST00000313860 FRAS1Q86XX4 4008 aa3.24□□□□□ -1.89
LIMCH1-201ENST00000313860 KRTAP3-3Q9BYR6 98 aa3.22□□□□□ -1.89
LIMCH1-201ENST00000313860 KRTAP3-2Q9BYR7 98 aa3.22□□□□□ -1.89
LIMCH1-201ENST00000313860 HUWE1Q7Z6Z7 4374 aaKnown RBP3.22□□□□□ -1.89
LIMCH1-201ENST00000313860 HECTD4Q9Y4D8 3996 aa3.19□□□□□ -1.9
LIMCH1-201ENST00000313860 DNAH7Q8WXX0 4024 aa3.18□□□□□ -1.9
LIMCH1-201ENST00000313860 LORP23490 312 aaPredicted RBP3.18□□□□□ -1.9
LIMCH1-201ENST00000313860 PLECQ15149 4684 aaKnown RBP3.17□□□□□ -1.9
LIMCH1-201ENST00000313860 CMYA5Q8N3K9 4069 aa3.17□□□□□ -1.9
LIMCH1-201ENST00000313860 KRTAP8-1Q8IUC2 63 aa3.16□□□□□ -1.9
LIMCH1-201ENST00000313860 VPS13DQ5THJ4 4388 aa3.15□□□□□ -1.9
LIMCH1-201ENST00000313860 DYNC2H1Q8NCM8 4307 aaKnown RBP3.15□□□□□ -1.9
LIMCH1-201ENST00000313860 LCE2DQ5TA82 110 aaPredicted RBP3.15□□□□□ -1.91
LIMCH1-201ENST00000313860 DNHD1Q96M86 4753 aa3.13□□□□□ -1.91
LIMCH1-201ENST00000313860 DNAH2Q9P225 4427 aa3.12□□□□□ -1.91
LIMCH1-201ENST00000313860 LRP1BQ9NZR2 4599 aa3.11□□□□□ -1.91
LIMCH1-201ENST00000313860 KMT2AQ03164 3969 aa3.09□□□□□ -1.91
LIMCH1-201ENST00000313860 DNAH11Q96DT5 4516 aa3.08□□□□□ -1.92
LIMCH1-201ENST00000313860 DNAH6Q9C0G6 4158 aa3.06□□□□□ -1.92
LIMCH1-201ENST00000313860 STARD9Q9P2P6 4700 aa3.05□□□□□ -1.92
LIMCH1-201ENST00000313860 PRKDCP78527 4128 aaKnown RBP3.05□□□□□ -1.92
LIMCH1-201ENST00000313860 DNAH5Q8TE73 4624 aa3.02□□□□□ -1.93
LIMCH1-201ENST00000313860 MT3P25713 68 aa3.01□□□□□ -1.93
LIMCH1-201ENST00000313860 LCE3BQ5TA77 95 aa3□□□□□ -1.93
LIMCH1-201ENST00000313860 VPS13BQ7Z7G8 4022 aa3□□□□□ -1.93
LIMCH1-201ENST00000313860 LCE3CQ5T5A8 94 aa2.97□□□□□ -1.93
LIMCH1-201ENST00000313860 KRTAP12-4P60329 112 aa2.97□□□□□ -1.93
LIMCH1-201ENST00000313860 SACSQ9NZJ4 4579 aa2.93□□□□□ -1.94
LIMCH1-201ENST00000313860 KRTAP19-4Q3LI73 84 aa2.92□□□□□ -1.94
LIMCH1-201ENST00000313860 PKD1P98161 4303 aa2.91□□□□□ -1.94
LIMCH1-201ENST00000313860 FAT2Q9NYQ8 4349 aa2.91□□□□□ -1.94
LIMCH1-201ENST00000313860 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
LIMCH1-201ENST00000313860 LRP1Q07954 4544 aaKnown RBP2.88□□□□□ -1.95
LIMCH1-201ENST00000313860 SPRR5A0A1B0GTR4 108 aa2.88□□□□□ -1.95
LIMCH1-201ENST00000313860 SPRR2FQ96RM1 72 aa2.88□□□□□ -1.95
LIMCH1-201ENST00000313860 PKHD1L1Q86WI1 4243 aa2.87□□□□□ -1.95
LIMCH1-201ENST00000313860 APOBP04114 4563 aaKnown RBP2.86□□□□□ -1.95
LIMCH1-201ENST00000313860 DYNC1H1Q14204 4646 aaKnown RBP2.85□□□□□ -1.95
LIMCH1-201ENST00000313860 HSPG2P98160 4391 aa2.84□□□□□ -1.95
LIMCH1-201ENST00000313860 PKHD1P08F94 4074 aa2.84□□□□□ -1.96
LIMCH1-201ENST00000313860 KMT2CQ8NEZ4 4911 aaKnown RBP2.83□□□□□ -1.96
LIMCH1-201ENST00000313860 KRTAP19-5Q3LI72 72 aa2.83□□□□□ -1.96
LIMCH1-201ENST00000313860 FAT1Q14517 4588 aa2.82□□□□□ -1.96
LIMCH1-201ENST00000313860 LCE3DQ9BYE3 92 aa2.81□□□□□ -1.96
LIMCH1-201ENST00000313860 HYDINQ4G0P3 5121 aa2.8□□□□□ -1.96
LIMCH1-201ENST00000313860 FAT3Q8TDW7 4589 aa2.8□□□□□ -1.96
LIMCH1-201ENST00000313860 MYCBP2O75592 4640 aa2.79□□□□□ -1.96
LIMCH1-201ENST00000313860 LCE4AQ5TA78 99 aa2.76□□□□□ -1.97
LIMCH1-201ENST00000313860 SPRR2GQ9BYE4 73 aa2.76□□□□□ -1.97
LIMCH1-201ENST00000313860 TNXBP22105 4242 aa2.75□□□□□ -1.97
LIMCH1-201ENST00000313860 PRM1P04553 51 aa2.73□□□□□ -1.97
LIMCH1-201ENST00000313860 RYR3Q15413 4870 aa2.72□□□□□ -1.97
LIMCH1-201ENST00000313860 MT1GP13640 62 aa2.71□□□□□ -1.98
LIMCH1-201ENST00000313860 SPRR2EP22531 72 aa2.71□□□□□ -1.98
LIMCH1-201ENST00000313860 SPRR2BP35325 72 aa2.71□□□□□ -1.98
LIMCH1-201ENST00000313860 SPRR2AP35326 72 aa2.71□□□□□ -1.98
LIMCH1-201ENST00000313860 MT1HL1P0DM35 61 aa2.7□□□□□ -1.98
LIMCH1-201ENST00000313860 KRTAP4-5Q9BYR2 181 aa2.69□□□□□ -1.98
LIMCH1-201ENST00000313860 KIAA1109Q2LD37 5005 aa2.69□□□□□ -1.98
LIMCH1-201ENST00000313860 LRP2P98164 4655 aa2.69□□□□□ -1.98
LIMCH1-201ENST00000313860 LCE2BO14633 110 aa2.69□□□□□ -1.98
LIMCH1-201ENST00000313860 EPPK1P58107 5090 aaKnown RBP2.64□□□□□ -1.99
LIMCH1-201ENST00000313860 RYR1P21817 5038 aa2.63□□□□□ -1.99
LIMCH1-201ENST00000313860 LPAP08519 4548 aa2.63□□□□□ -1.99
LIMCH1-201ENST00000313860 PCLOQ9Y6V0 5065 aa2.63□□□□□ -1.99
LIMCH1-201ENST00000313860 KRTAP21-3Q3LHN1 58 aa2.63□□□□□ -1.99
LIMCH1-201ENST00000313860 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
LIMCH1-201ENST00000313860 SPRR2DP22532 72 aa2.61□□□□□ -1.99
LIMCH1-201ENST00000313860 RYR2Q92736 4967 aa2.61□□□□□ -1.99
LIMCH1-201ENST00000313860 ABCA13Q86UQ4 5058 aa2.58□□□□□ -2
LIMCH1-201ENST00000313860 LCE2CQ5TA81 110 aa2.57□□□□□ -2
LIMCH1-201ENST00000313860 RNF213Q63HN8 5207 aa2.56□□□□□ -2
LIMCH1-201ENST00000313860 KRTAP4-1Q9BYQ7 146 aa2.55□□□□□ -2
LIMCH1-201ENST00000313860 KRTAP19-2Q3LHN2 52 aa2.54□□□□□ -2
LIMCH1-201ENST00000313860 LCE1DQ5T752 114 aa2.52□□□□□ -2.01
LIMCH1-201ENST00000313860 MUC2Q02817 5179 aa2.52□□□□□ -2.01
LIMCH1-201ENST00000313860 UBR4Q5T4S7 5183 aa2.49□□□□□ -2.01
LIMCH1-201ENST00000313860 HERC1Q15751 4861 aa2.48□□□□□ -2.01
LIMCH1-201ENST00000313860 MUC17Q685J3 4493 aa2.48□□□□□ -2.01
LIMCH1-201ENST00000313860 MT1HP80294 61 aa2.47□□□□□ -2.01
LIMCH1-201ENST00000313860 MT2AP02795 61 aa2.46□□□□□ -2.02
LIMCH1-201ENST00000313860 MT1FP04733 61 aa2.44□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE5AQ5TCM9 118 aa2.44□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE1CQ5T751 118 aa2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE1EQ5T753 118 aa2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE1FQ5T754 118 aa2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE1AQ5T7P2 110 aa2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 LCE2AQ5TA79 106 aaPredicted RBP2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 MT4P47944 62 aa2.43□□□□□ -2.02
LIMCH1-201ENST00000313860 FAT4Q6V0I7 4981 aa2.41□□□□□ -2.02
LIMCH1-201ENST00000313860 FLGP20930 4061 aaPredicted RBP2.41□□□□□ -2.02
LIMCH1-201ENST00000313860 KRTAP19-8Q3LI54 63 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms