RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
SCN9A-201ENST00000303354 KRTAP8-1Q8IUC2 63 aa3.39□□□□□ -1.87
SCN9A-201ENST00000303354 KRTAP3-3Q9BYR6 98 aa3.39□□□□□ -1.87
SCN9A-201ENST00000303354 KRTAP10-4P60372 401 aaPredicted RBP3.37□□□□□ -1.87
SCN9A-201ENST00000303354 PLECQ15149 4684 aaKnown RBP3.37□□□□□ -1.87
SCN9A-201ENST00000303354 KRTAP10-5P60370 271 aa3.37□□□□□ -1.87
SCN9A-201ENST00000303354 DNAH3Q8TD57 4116 aa3.35□□□□□ -1.87
SCN9A-201ENST00000303354 DNAH5Q8TE73 4624 aa3.35□□□□□ -1.87
SCN9A-201ENST00000303354 KRTAP12-3P60328 96 aa3.34□□□□□ -1.87
SCN9A-201ENST00000303354 LYSTQ99698 3801 aa3.33□□□□□ -1.88
SCN9A-201ENST00000303354 KRTAP3-2Q9BYR7 98 aa3.33□□□□□ -1.88
SCN9A-201ENST00000303354 DNAH11Q96DT5 4516 aa3.32□□□□□ -1.88
SCN9A-201ENST00000303354 KRTAP4-1Q9BYQ7 146 aa3.31□□□□□ -1.88
SCN9A-201ENST00000303354 FRAS1Q86XX4 4008 aa3.31□□□□□ -1.88
SCN9A-201ENST00000303354 SACSQ9NZJ4 4579 aa3.31□□□□□ -1.88
SCN9A-201ENST00000303354 HECTD4Q9Y4D8 3996 aa3.3□□□□□ -1.88
SCN9A-201ENST00000303354 DNAH17Q9UFH2 4485 aa3.29□□□□□ -1.88
SCN9A-201ENST00000303354 FAT1Q14517 4588 aa3.29□□□□□ -1.88
SCN9A-201ENST00000303354 LRP1BQ9NZR2 4599 aa3.28□□□□□ -1.88
SCN9A-201ENST00000303354 DNAH8Q96JB1 4490 aa3.27□□□□□ -1.89
SCN9A-201ENST00000303354 VPS13DQ5THJ4 4388 aa3.27□□□□□ -1.89
SCN9A-201ENST00000303354 DNAH2Q9P225 4427 aa3.27□□□□□ -1.89
SCN9A-201ENST00000303354 MT1HP80294 61 aa3.27□□□□□ -1.89
SCN9A-201ENST00000303354 ANK2Q01484 3957 aa3.24□□□□□ -1.89
SCN9A-201ENST00000303354 SPRR2FQ96RM1 72 aa3.24□□□□□ -1.89
SCN9A-201ENST00000303354 FAT2Q9NYQ8 4349 aa3.23□□□□□ -1.89
SCN9A-201ENST00000303354 DYNC1H1Q14204 4646 aaKnown RBP3.22□□□□□ -1.89
SCN9A-201ENST00000303354 STARD9Q9P2P6 4700 aa3.19□□□□□ -1.9
SCN9A-201ENST00000303354 CMYA5Q8N3K9 4069 aa3.18□□□□□ -1.9
SCN9A-201ENST00000303354 KMT2AQ03164 3969 aa3.17□□□□□ -1.9
SCN9A-201ENST00000303354 DYNC2H1Q8NCM8 4307 aaKnown RBP3.16□□□□□ -1.9
SCN9A-201ENST00000303354 MT2AP02795 61 aa3.13□□□□□ -1.91
SCN9A-201ENST00000303354 DNAH7Q8WXX0 4024 aa3.13□□□□□ -1.91
SCN9A-201ENST00000303354 DNHD1Q96M86 4753 aa3.12□□□□□ -1.91
SCN9A-201ENST00000303354 PRKDCP78527 4128 aaKnown RBP3.12□□□□□ -1.91
SCN9A-201ENST00000303354 MT1FP04733 61 aa3.11□□□□□ -1.91
SCN9A-201ENST00000303354 SPRR2EP22531 72 aa3.11□□□□□ -1.91
SCN9A-201ENST00000303354 SPRR2BP35325 72 aa3.11□□□□□ -1.91
SCN9A-201ENST00000303354 SPRR2AP35326 72 aa3.11□□□□□ -1.91
SCN9A-201ENST00000303354 LPAP08519 4548 aa3.1□□□□□ -1.91
SCN9A-201ENST00000303354 VPS13BQ7Z7G8 4022 aa3.08□□□□□ -1.92
SCN9A-201ENST00000303354 KRTAP10-7P60409 375 aaPredicted RBP3.08□□□□□ -1.92
SCN9A-201ENST00000303354 KRTAP19-5Q3LI72 72 aa3.08□□□□□ -1.92
SCN9A-201ENST00000303354 RYR1P21817 5038 aa3.08□□□□□ -1.92
SCN9A-201ENST00000303354 APOBP04114 4563 aaKnown RBP3.07□□□□□ -1.92
SCN9A-201ENST00000303354 DNAH6Q9C0G6 4158 aa3.07□□□□□ -1.92
SCN9A-201ENST00000303354 KRTAP17-1Q9BYP8 105 aa3.05□□□□□ -1.92
SCN9A-201ENST00000303354 INE1O15225 51 aa3.04□□□□□ -1.92
SCN9A-201ENST00000303354 FAT3Q8TDW7 4589 aa3.04□□□□□ -1.92
SCN9A-201ENST00000303354 SPRR2DP22532 72 aa2.97□□□□□ -1.93
SCN9A-201ENST00000303354 HSPG2P98160 4391 aa2.97□□□□□ -1.93
SCN9A-201ENST00000303354 LCE3BQ5TA77 95 aa2.95□□□□□ -1.94
SCN9A-201ENST00000303354 MT1GP13640 62 aa2.92□□□□□ -1.94
SCN9A-201ENST00000303354 KRTAP4-8A0A0G2JLE6 195 aa2.92□□□□□ -1.94
SCN9A-201ENST00000303354 KRTAP4-8Q9BYQ9 185 aa2.92□□□□□ -1.94
SCN9A-201ENST00000303354 SPRR2GQ9BYE4 73 aa2.91□□□□□ -1.94
SCN9A-201ENST00000303354 PKD1P98161 4303 aa2.91□□□□□ -1.94
SCN9A-201ENST00000303354 LRP1Q07954 4544 aaKnown RBP2.91□□□□□ -1.94
SCN9A-201ENST00000303354 MYCBP2O75592 4640 aa2.91□□□□□ -1.94
SCN9A-201ENST00000303354 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
SCN9A-201ENST00000303354 LCE2BO14633 110 aa2.87□□□□□ -1.95
SCN9A-201ENST00000303354 KRTAP23-1A1A580 65 aa2.86□□□□□ -1.95
SCN9A-201ENST00000303354 HYDINQ4G0P3 5121 aa2.86□□□□□ -1.95
SCN9A-201ENST00000303354 RYR3Q15413 4870 aa2.86□□□□□ -1.95
SCN9A-201ENST00000303354 KRTAP19-1Q8IUB9 90 aa2.85□□□□□ -1.95
SCN9A-201ENST00000303354 PKHD1P08F94 4074 aa2.81□□□□□ -1.96
SCN9A-201ENST00000303354 MT4P47944 62 aa2.78□□□□□ -1.96
SCN9A-201ENST00000303354 KRTAP4-7Q9BYR0 210 aa2.76□□□□□ -1.97
SCN9A-201ENST00000303354 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
SCN9A-201ENST00000303354 MT1XP80297 61 aa2.75□□□□□ -1.97
SCN9A-201ENST00000303354 PKHD1L1Q86WI1 4243 aa2.75□□□□□ -1.97
SCN9A-201ENST00000303354 TNXBP22105 4242 aa2.74□□□□□ -1.97
SCN9A-201ENST00000303354 KRTAP9-8Q9BYQ0 159 aa2.74□□□□□ -1.97
SCN9A-201ENST00000303354 LCE2DQ5TA82 110 aaPredicted RBP2.73□□□□□ -1.97
SCN9A-201ENST00000303354 LCE2CQ5TA81 110 aa2.73□□□□□ -1.97
SCN9A-201ENST00000303354 MT1BP07438 61 aa2.72□□□□□ -1.97
SCN9A-201ENST00000303354 KRTAP12-4P60329 112 aa2.71□□□□□ -1.97
SCN9A-201ENST00000303354 KRTAP9-2Q9BYQ4 174 aa2.69□□□□□ -1.98
SCN9A-201ENST00000303354 LRP2P98164 4655 aa2.67□□□□□ -1.98
SCN9A-201ENST00000303354 KRTAP9-3Q9BYQ3 159 aa2.66□□□□□ -1.98
SCN9A-201ENST00000303354 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
SCN9A-201ENST00000303354 FLGP20930 4061 aaPredicted RBP2.64□□□□□ -1.99
SCN9A-201ENST00000303354 LOC100996750A0A140TA64 210 aa2.64□□□□□ -1.99
SCN9A-201ENST00000303354 HERC1Q15751 4861 aa2.64□□□□□ -1.99
SCN9A-201ENST00000303354 RYR2Q92736 4967 aa2.63□□□□□ -1.99
SCN9A-201ENST00000303354 HERC2O95714 4834 aa2.63□□□□□ -1.99
SCN9A-201ENST00000303354 KRTAP4-3Q9BYR4 195 aa2.63□□□□□ -1.99
SCN9A-201ENST00000303354 MUC17Q685J3 4493 aa2.62□□□□□ -1.99
SCN9A-201ENST00000303354 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
SCN9A-201ENST00000303354 KIAA1109Q2LD37 5005 aa2.59□□□□□ -1.99
SCN9A-201ENST00000303354 BIRC6Q9NR09 4857 aa2.58□□□□□ -2
SCN9A-201ENST00000303354 SYNE2Q8WXH0 6885 aaKnown RBP2.58□□□□□ -2
SCN9A-201ENST00000303354 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
SCN9A-201ENST00000303354 FSIP2Q5CZC0 6907 aa2.57□□□□□ -2
SCN9A-201ENST00000303354 KMT2CQ8NEZ4 4911 aaKnown RBP2.56□□□□□ -2
SCN9A-201ENST00000303354 KRTAP9-6A0A140TA67 174 aa2.55□□□□□ -2
SCN9A-201ENST00000303354 LCE1DQ5T752 114 aa2.54□□□□□ -2
SCN9A-201ENST00000303354 KRTAP19-3Q7Z4W3 81 aa2.54□□□□□ -2
SCN9A-201ENST00000303354 LCE3EQ5T5B0 92 aa2.48□□□□□ -2.01
SCN9A-201ENST00000303354 KRTAP4-9Q9BYQ8 210 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms