RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 KMT2AQ03164 3969 aa2.18□□□□□ -2.06
CSMD3-201ENST00000297405 KRTAP12-3P60328 96 aa2.15□□□□□ -2.06
CSMD3-201ENST00000297405 DNAH6Q9C0G6 4158 aa2.14□□□□□ -2.07
CSMD3-201ENST00000297405 KRTAP3-2Q9BYR7 98 aa2.14□□□□□ -2.07
CSMD3-201ENST00000297405 FLGP20930 4061 aaPredicted RBP2.12□□□□□ -2.07
CSMD3-201ENST00000297405 KRTAP3-3Q9BYR6 98 aa2.09□□□□□ -2.07
CSMD3-201ENST00000297405 A0A1B0GVY2 172 aa2.08□□□□□ -2.08
CSMD3-201ENST00000297405 VPS13BQ7Z7G8 4022 aa2.05□□□□□ -2.08
CSMD3-201ENST00000297405 HUWE1Q7Z6Z7 4374 aaKnown RBP2.01□□□□□ -2.09
CSMD3-201ENST00000297405 DNAH2Q9P225 4427 aa2□□□□□ -2.09
CSMD3-201ENST00000297405 LCE3AQ5TA76 89 aa1.95□□□□□ -2.1
CSMD3-201ENST00000297405 KRTAP10-5P60370 271 aa1.94□□□□□ -2.1
CSMD3-201ENST00000297405 LORP23490 312 aaPredicted RBP1.94□□□□□ -2.1
CSMD3-201ENST00000297405 FRAS1Q86XX4 4008 aa1.93□□□□□ -2.1
CSMD3-201ENST00000297405 KRTAP8-1Q8IUC2 63 aa1.92□□□□□ -2.1
CSMD3-201ENST00000297405 PRKDCP78527 4128 aaKnown RBP1.91□□□□□ -2.1
CSMD3-201ENST00000297405 DNAH1Q9P2D7 4330 aa1.91□□□□□ -2.1
CSMD3-201ENST00000297405 SPRR5A0A1B0GTR4 108 aa1.91□□□□□ -2.1
CSMD3-201ENST00000297405 SPRR2GQ9BYE4 73 aa1.9□□□□□ -2.11
CSMD3-201ENST00000297405 LCE3CQ5T5A8 94 aa1.89□□□□□ -2.11
CSMD3-201ENST00000297405 KRTAP10-7P60409 375 aaPredicted RBP1.83□□□□□ -2.12
CSMD3-201ENST00000297405 MT1HL1P0DM35 61 aa1.82□□□□□ -2.12
CSMD3-201ENST00000297405 DNAH10Q8IVF4 4471 aa1.8□□□□□ -2.12
CSMD3-201ENST00000297405 CRCT1Q9UGL9 99 aa1.78□□□□□ -2.12
CSMD3-201ENST00000297405 KRTAP10-4P60372 401 aaPredicted RBP1.78□□□□□ -2.12
CSMD3-201ENST00000297405 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
CSMD3-201ENST00000297405 PKHD1P08F94 4074 aa1.78□□□□□ -2.13
CSMD3-201ENST00000297405 VPS13DQ5THJ4 4388 aa1.75□□□□□ -2.13
CSMD3-201ENST00000297405 PKHD1L1Q86WI1 4243 aa1.72□□□□□ -2.13
CSMD3-201ENST00000297405 KRTAP19-5Q3LI72 72 aa1.7□□□□□ -2.14
CSMD3-201ENST00000297405 LCE3EQ5T5B0 92 aa1.7□□□□□ -2.14
CSMD3-201ENST00000297405 DNAH17Q9UFH2 4485 aa1.69□□□□□ -2.14
CSMD3-201ENST00000297405 LCE3DQ9BYE3 92 aa1.69□□□□□ -2.14
CSMD3-201ENST00000297405 KRTAP19-8Q3LI54 63 aa1.67□□□□□ -2.14
CSMD3-201ENST00000297405 ANK3Q12955 4377 aaKnown RBP1.65□□□□□ -2.15
CSMD3-201ENST00000297405 DYNC2H1Q8NCM8 4307 aaKnown RBP1.65□□□□□ -2.15
CSMD3-201ENST00000297405 MT1LQ93083 61 aa1.65□□□□□ -2.15
CSMD3-201ENST00000297405 DNAH8Q96JB1 4490 aa1.64□□□□□ -2.15
CSMD3-201ENST00000297405 HSPG2P98160 4391 aa1.63□□□□□ -2.15
CSMD3-201ENST00000297405 MT1GP13640 62 aa1.62□□□□□ -2.15
CSMD3-201ENST00000297405 FAT2Q9NYQ8 4349 aa1.62□□□□□ -2.15
CSMD3-201ENST00000297405 LRP1Q07954 4544 aaKnown RBP1.61□□□□□ -2.15
CSMD3-201ENST00000297405 DNAH11Q96DT5 4516 aa1.6□□□□□ -2.15
CSMD3-201ENST00000297405 SPRR2AP35326 72 aa1.6□□□□□ -2.15
CSMD3-201ENST00000297405 MT2AP02795 61 aa1.59□□□□□ -2.15
CSMD3-201ENST00000297405 MT1FP04733 61 aa1.58□□□□□ -2.16
CSMD3-201ENST00000297405 LCE3BQ5TA77 95 aa1.58□□□□□ -2.16
CSMD3-201ENST00000297405 SPRR2BP35325 72 aa1.58□□□□□ -2.16
CSMD3-201ENST00000297405 SPRR2FQ96RM1 72 aa1.58□□□□□ -2.16
CSMD3-201ENST00000297405 MT1HP80294 61 aa1.57□□□□□ -2.16
CSMD3-201ENST00000297405 KRTAP19-1Q8IUB9 90 aa1.56□□□□□ -2.16
CSMD3-201ENST00000297405 PKD1P98161 4303 aa1.56□□□□□ -2.16
CSMD3-201ENST00000297405 MT1EP04732 61 aa1.55□□□□□ -2.16
CSMD3-201ENST00000297405 MT1XP80297 61 aa1.54□□□□□ -2.16
CSMD3-201ENST00000297405 MT1AP04731 61 aa1.53□□□□□ -2.16
CSMD3-201ENST00000297405 TNXBP22105 4242 aa1.52□□□□□ -2.17
CSMD3-201ENST00000297405 LCE2BO14633 110 aa1.51□□□□□ -2.17
CSMD3-201ENST00000297405 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
CSMD3-201ENST00000297405 KRTAP2-3P0C7H8 128 aa1.51□□□□□ -2.17
CSMD3-201ENST00000297405 KRTAP2-4Q9BYR9 128 aa1.51□□□□□ -2.17
CSMD3-201ENST00000297405 KRTAP2-1Q9BYU5 128 aa1.51□□□□□ -2.17
CSMD3-201ENST00000297405 PRM1P04553 51 aa1.5□□□□□ -2.17
CSMD3-201ENST00000297405 RYR1P21817 5038 aa1.49□□□□□ -2.17
CSMD3-201ENST00000297405 KRTAP19-3Q7Z4W3 81 aa1.48□□□□□ -2.17
CSMD3-201ENST00000297405 SPRR2DP22532 72 aa1.47□□□□□ -2.17
CSMD3-201ENST00000297405 MT1MQ8N339 61 aa1.46□□□□□ -2.18
CSMD3-201ENST00000297405 APOBP04114 4563 aaKnown RBP1.45□□□□□ -2.18
CSMD3-201ENST00000297405 KRTAP4-1Q9BYQ7 146 aa1.44□□□□□ -2.18
CSMD3-201ENST00000297405 DYNC1H1Q14204 4646 aaKnown RBP1.44□□□□□ -2.18
CSMD3-201ENST00000297405 SYNE1Q8NF91 8797 aaKnown RBP1.43□□□□□ -2.18
CSMD3-201ENST00000297405 STARD9Q9P2P6 4700 aa1.43□□□□□ -2.18
CSMD3-201ENST00000297405 SACSQ9NZJ4 4579 aa1.42□□□□□ -2.18
CSMD3-201ENST00000297405 DNAH5Q8TE73 4624 aa1.42□□□□□ -2.18
CSMD3-201ENST00000297405 MT1BP07438 61 aa1.42□□□□□ -2.18
CSMD3-201ENST00000297405 SPRR2EP22531 72 aa1.42□□□□□ -2.18
CSMD3-201ENST00000297405 MUC17Q685J3 4493 aa1.41□□□□□ -2.18
CSMD3-201ENST00000297405 PCLOQ9Y6V0 5065 aa1.41□□□□□ -2.18
CSMD3-201ENST00000297405 KRTAP9-8Q9BYQ0 159 aa1.38□□□□□ -2.19
CSMD3-201ENST00000297405 KRTAP4-5Q9BYR2 181 aa1.38□□□□□ -2.19
CSMD3-201ENST00000297405 LCE2CQ5TA81 110 aa1.37□□□□□ -2.19
CSMD3-201ENST00000297405 DNHD1Q96M86 4753 aa1.36□□□□□ -2.19
CSMD3-201ENST00000297405 FAT1Q14517 4588 aa1.35□□□□□ -2.19
CSMD3-201ENST00000297405 KRTAP9-3Q9BYQ3 159 aa1.34□□□□□ -2.2
CSMD3-201ENST00000297405 PLECQ15149 4684 aaKnown RBP1.33□□□□□ -2.2
CSMD3-201ENST00000297405 MYCBP2O75592 4640 aa1.33□□□□□ -2.2
CSMD3-201ENST00000297405 LRP1BQ9NZR2 4599 aa1.31□□□□□ -2.2
CSMD3-201ENST00000297405 KRTAP2-2Q9BYT5 123 aa1.31□□□□□ -2.2
CSMD3-201ENST00000297405 FAT3Q8TDW7 4589 aa1.3□□□□□ -2.2
CSMD3-201ENST00000297405 LCE1AQ5T7P2 110 aa1.3□□□□□ -2.2
CSMD3-201ENST00000297405 LCE2DQ5TA82 110 aaPredicted RBP1.29□□□□□ -2.2
CSMD3-201ENST00000297405 KRTAP6-2Q3LI66 62 aa1.28□□□□□ -2.2
CSMD3-201ENST00000297405 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
CSMD3-201ENST00000297405 HYDINQ4G0P3 5121 aa1.27□□□□□ -2.21
CSMD3-201ENST00000297405 RYR2Q92736 4967 aa1.27□□□□□ -2.21
CSMD3-201ENST00000297405 LCE1DQ5T752 114 aa1.26□□□□□ -2.21
CSMD3-201ENST00000297405 KRTAP9-2Q9BYQ4 174 aa1.25□□□□□ -2.21
CSMD3-201ENST00000297405 KRTAP4-8A0A0G2JLE6 195 aa1.24□□□□□ -2.21
CSMD3-201ENST00000297405 KRTAP4-8Q9BYQ9 185 aa1.24□□□□□ -2.21
CSMD3-201ENST00000297405 KRTAP19-7Q3SYF9 63 aa1.24□□□□□ -2.21
CSMD3-201ENST00000297405 LCE1BQ5T7P3 118 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms