RNA–Protein interactions for RNA: ENST00000283254.11

SCN3A-201, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCN3A, Length 9,091 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-201ENST00000283254 CMYA5Q8N3K9 4069 aa1.78□□□□□ -2.12
SCN3A-201ENST00000283254 CSMD3Q7Z407 3707 aa1.78□□□□□ -2.12
SCN3A-201ENST00000283254 CRCT1Q9UGL9 99 aa1.78□□□□□ -2.12
SCN3A-201ENST00000283254 LYSTQ99698 3801 aa1.78□□□□□ -2.12
SCN3A-201ENST00000283254 PCLOQ9Y6V0 5065 aa1.77□□□□□ -2.13
SCN3A-201ENST00000283254 HECTD4Q9Y4D8 3996 aa1.77□□□□□ -2.13
SCN3A-201ENST00000283254 DNAH1Q9P2D7 4330 aa1.77□□□□□ -2.13
SCN3A-201ENST00000283254 RYR3Q15413 4870 aa1.77□□□□□ -2.13
SCN3A-201ENST00000283254 KRTAP8-1Q8IUC2 63 aa1.76□□□□□ -2.13
SCN3A-201ENST00000283254 DNAH6Q9C0G6 4158 aa1.76□□□□□ -2.13
SCN3A-201ENST00000283254 CUBNO60494 3623 aa1.75□□□□□ -2.13
SCN3A-201ENST00000283254 KRTAP3-2Q9BYR7 98 aa1.74□□□□□ -2.13
SCN3A-201ENST00000283254 KRTAP19-4Q3LI73 84 aa1.73□□□□□ -2.13
SCN3A-201ENST00000283254 ALMS1Q8TCU4 4167 aa1.73□□□□□ -2.13
SCN3A-201ENST00000283254 KRTAP10-4P60372 401 aaPredicted RBP1.73□□□□□ -2.13
SCN3A-201ENST00000283254 KRTAP3-3Q9BYR6 98 aa1.72□□□□□ -2.13
SCN3A-201ENST00000283254 DNAH9Q9NYC9 4486 aa1.71□□□□□ -2.14
SCN3A-201ENST00000283254 DNAH10Q8IVF4 4471 aa1.71□□□□□ -2.14
SCN3A-201ENST00000283254 DYNC2H1Q8NCM8 4307 aaKnown RBP1.7□□□□□ -2.14
SCN3A-201ENST00000283254 PRKDCP78527 4128 aaKnown RBP1.7□□□□□ -2.14
SCN3A-201ENST00000283254 HYDINQ4G0P3 5121 aa1.7□□□□□ -2.14
SCN3A-201ENST00000283254 KRTAP10-5P60370 271 aa1.69□□□□□ -2.14
SCN3A-201ENST00000283254 LCE3AQ5TA76 89 aa1.69□□□□□ -2.14
SCN3A-201ENST00000283254 EPPK1P58107 5090 aaKnown RBP1.68□□□□□ -2.14
SCN3A-201ENST00000283254 FRAS1Q86XX4 4008 aa1.68□□□□□ -2.14
SCN3A-201ENST00000283254 KRTAP4-5Q9BYR2 181 aa1.67□□□□□ -2.14
SCN3A-201ENST00000283254 DNAH17Q9UFH2 4485 aa1.67□□□□□ -2.14
SCN3A-201ENST00000283254 DNAH2Q9P225 4427 aa1.67□□□□□ -2.14
SCN3A-201ENST00000283254 DNAH8Q96JB1 4490 aa1.66□□□□□ -2.14
SCN3A-201ENST00000283254 KRTAP10-7P60409 375 aaPredicted RBP1.66□□□□□ -2.14
SCN3A-201ENST00000283254 VPS13BQ7Z7G8 4022 aa1.66□□□□□ -2.14
SCN3A-201ENST00000283254 PLECQ15149 4684 aaKnown RBP1.66□□□□□ -2.14
SCN3A-201ENST00000283254 VPS13DQ5THJ4 4388 aa1.66□□□□□ -2.14
SCN3A-201ENST00000283254 DNAH11Q96DT5 4516 aa1.65□□□□□ -2.15
SCN3A-201ENST00000283254 RYR2Q92736 4967 aa1.65□□□□□ -2.15
SCN3A-201ENST00000283254 LORP23490 312 aaPredicted RBP1.64□□□□□ -2.15
SCN3A-201ENST00000283254 KMT2AQ03164 3969 aa1.63□□□□□ -2.15
SCN3A-201ENST00000283254 SPRR2FQ96RM1 72 aa1.62□□□□□ -2.15
SCN3A-201ENST00000283254 SPRR2GQ9BYE4 73 aa1.61□□□□□ -2.15
SCN3A-201ENST00000283254 KMT2CQ8NEZ4 4911 aaKnown RBP1.6□□□□□ -2.15
SCN3A-201ENST00000283254 ABCA13Q86UQ4 5058 aa1.6□□□□□ -2.15
SCN3A-201ENST00000283254 MT2AP02795 61 aa1.59□□□□□ -2.15
SCN3A-201ENST00000283254 STARD9Q9P2P6 4700 aa1.59□□□□□ -2.15
SCN3A-201ENST00000283254 MT1HP80294 61 aa1.59□□□□□ -2.16
SCN3A-201ENST00000283254 SACSQ9NZJ4 4579 aa1.59□□□□□ -2.16
SCN3A-201ENST00000283254 BIRC6Q9NR09 4857 aa1.58□□□□□ -2.16
SCN3A-201ENST00000283254 DNAH5Q8TE73 4624 aa1.58□□□□□ -2.16
SCN3A-201ENST00000283254 PKHD1P08F94 4074 aa1.58□□□□□ -2.16
SCN3A-201ENST00000283254 UBR4Q5T4S7 5183 aa1.55□□□□□ -2.16
SCN3A-201ENST00000283254 LCE3CQ5T5A8 94 aa1.54□□□□□ -2.16
SCN3A-201ENST00000283254 KIAA1109Q2LD37 5005 aa1.54□□□□□ -2.16
SCN3A-201ENST00000283254 FAT2Q9NYQ8 4349 aa1.54□□□□□ -2.16
SCN3A-201ENST00000283254 LRP1BQ9NZR2 4599 aa1.53□□□□□ -2.16
SCN3A-201ENST00000283254 KRTAP19-5Q3LI72 72 aa1.53□□□□□ -2.16
SCN3A-201ENST00000283254 KRTAP12-4P60329 112 aa1.53□□□□□ -2.17
SCN3A-201ENST00000283254 MT1FP04733 61 aa1.52□□□□□ -2.17
SCN3A-201ENST00000283254 PKD1P98161 4303 aa1.52□□□□□ -2.17
SCN3A-201ENST00000283254 PKHD1L1Q86WI1 4243 aa1.51□□□□□ -2.17
SCN3A-201ENST00000283254 DYNC1H1Q14204 4646 aaKnown RBP1.5□□□□□ -2.17
SCN3A-201ENST00000283254 SPRR2EP22531 72 aa1.5□□□□□ -2.17
SCN3A-201ENST00000283254 SPRR2BP35325 72 aa1.5□□□□□ -2.17
SCN3A-201ENST00000283254 SPRR2AP35326 72 aa1.5□□□□□ -2.17
SCN3A-201ENST00000283254 KRTAP4-1Q9BYQ7 146 aa1.5□□□□□ -2.17
SCN3A-201ENST00000283254 HERC2O95714 4834 aa1.49□□□□□ -2.17
SCN3A-201ENST00000283254 APOBP04114 4563 aaKnown RBP1.49□□□□□ -2.17
SCN3A-201ENST00000283254 KRTAP19-8Q3LI54 63 aa1.48□□□□□ -2.17
SCN3A-201ENST00000283254 SPRR2DP22532 72 aa1.48□□□□□ -2.17
SCN3A-201ENST00000283254 FAT3Q8TDW7 4589 aa1.48□□□□□ -2.17
SCN3A-201ENST00000283254 HMCN2Q8NDA2 5059 aa1.47□□□□□ -2.17
SCN3A-201ENST00000283254 LCE2BO14633 110 aa1.47□□□□□ -2.17
SCN3A-201ENST00000283254 RNF213Q63HN8 5207 aa1.47□□□□□ -2.17
SCN3A-201ENST00000283254 FAT1Q14517 4588 aa1.47□□□□□ -2.17
SCN3A-201ENST00000283254 HERC1Q15751 4861 aa1.47□□□□□ -2.17
SCN3A-201ENST00000283254 MT1GP13640 62 aa1.46□□□□□ -2.18
SCN3A-201ENST00000283254 TNXBP22105 4242 aa1.44□□□□□ -2.18
SCN3A-201ENST00000283254 LRP1Q07954 4544 aaKnown RBP1.44□□□□□ -2.18
SCN3A-201ENST00000283254 FLGP20930 4061 aaPredicted RBP1.43□□□□□ -2.18
SCN3A-201ENST00000283254 HSPG2P98160 4391 aa1.43□□□□□ -2.18
SCN3A-201ENST00000283254 LCE3BQ5TA77 95 aa1.43□□□□□ -2.18
SCN3A-201ENST00000283254 FAT4Q6V0I7 4981 aa1.42□□□□□ -2.18
SCN3A-201ENST00000283254 KRTAP19-1Q8IUB9 90 aa1.41□□□□□ -2.18
SCN3A-201ENST00000283254 LCE3DQ9BYE3 92 aa1.4□□□□□ -2.19
SCN3A-201ENST00000283254 MT1XP80297 61 aa1.4□□□□□ -2.19
SCN3A-201ENST00000283254 LCE3EQ5T5B0 92 aa1.39□□□□□ -2.19
SCN3A-201ENST00000283254 SYNE1Q8NF91 8797 aaKnown RBP1.38□□□□□ -2.19
SCN3A-201ENST00000283254 LCE2CQ5TA81 110 aa1.38□□□□□ -2.19
SCN3A-201ENST00000283254 MUC17Q685J3 4493 aa1.37□□□□□ -2.19
SCN3A-201ENST00000283254 KRTAP19-3Q7Z4W3 81 aa1.37□□□□□ -2.19
SCN3A-201ENST00000283254 MYCBP2O75592 4640 aa1.36□□□□□ -2.19
SCN3A-201ENST00000283254 MT1BP07438 61 aa1.36□□□□□ -2.19
SCN3A-201ENST00000283254 MT3P25713 68 aa1.36□□□□□ -2.19
SCN3A-201ENST00000283254 KRTAP5-2Q701N4 177 aa1.35□□□□□ -2.19
SCN3A-201ENST00000283254 LCE2DQ5TA82 110 aaPredicted RBP1.35□□□□□ -2.19
SCN3A-201ENST00000283254 MT1LQ93083 61 aa1.34□□□□□ -2.2
SCN3A-201ENST00000283254 KRTAP9-3Q9BYQ3 159 aa1.33□□□□□ -2.2
SCN3A-201ENST00000283254 LPAP08519 4548 aa1.33□□□□□ -2.2
SCN3A-201ENST00000283254 SPRR5A0A1B0GTR4 108 aa1.33□□□□□ -2.2
SCN3A-201ENST00000283254 KRTAP9-8Q9BYQ0 159 aa1.32□□□□□ -2.2
SCN3A-201ENST00000283254 GPR98Q8WXG9 6306 aa1.32□□□□□ -2.2
SCN3A-201ENST00000283254 MUC2Q02817 5179 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms