RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
PTPN4-201ENST00000263708 KRTAP4-5Q9BYR2 181 aa4.73□□□□□ -1.65
PTPN4-201ENST00000263708 DNAH7Q8WXX0 4024 aa4.65□□□□□ -1.66
PTPN4-201ENST00000263708 KRTAP10-7P60409 375 aaPredicted RBP4.63□□□□□ -1.67
PTPN4-201ENST00000263708 CSMD2Q7Z408 3487 aa4.62□□□□□ -1.67
PTPN4-201ENST00000263708 HECTD4Q9Y4D8 3996 aa4.58□□□□□ -1.68
PTPN4-201ENST00000263708 SPRR2FQ96RM1 72 aa4.56□□□□□ -1.68
PTPN4-201ENST00000263708 ANK2Q01484 3957 aa4.56□□□□□ -1.68
PTPN4-201ENST00000263708 CMYA5Q8N3K9 4069 aa4.47□□□□□ -1.69
PTPN4-201ENST00000263708 ZNF469Q96JG9 3925 aaPredicted RBP4.44□□□□□ -1.7
PTPN4-201ENST00000263708 KRTAP10-4P60372 401 aaPredicted RBP4.44□□□□□ -1.7
PTPN4-201ENST00000263708 HUWE1Q7Z6Z7 4374 aaKnown RBP4.43□□□□□ -1.7
PTPN4-201ENST00000263708 ANK3Q12955 4377 aaKnown RBP4.43□□□□□ -1.7
PTPN4-201ENST00000263708 DNAH3Q8TD57 4116 aa4.43□□□□□ -1.7
PTPN4-201ENST00000263708 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
PTPN4-201ENST00000263708 MT1HP80294 61 aa4.35□□□□□ -1.71
PTPN4-201ENST00000263708 LCE3CQ5T5A8 94 aa4.35□□□□□ -1.71
PTPN4-201ENST00000263708 SPRR2EP22531 72 aa4.33□□□□□ -1.72
PTPN4-201ENST00000263708 SPRR2BP35325 72 aa4.33□□□□□ -1.72
PTPN4-201ENST00000263708 SPRR2AP35326 72 aa4.33□□□□□ -1.72
PTPN4-201ENST00000263708 LCE3BQ5TA77 95 aa4.32□□□□□ -1.72
PTPN4-201ENST00000263708 VPS13BQ7Z7G8 4022 aa4.31□□□□□ -1.72
PTPN4-201ENST00000263708 DNAH1Q9P2D7 4330 aa4.31□□□□□ -1.72
PTPN4-201ENST00000263708 DNAH2Q9P225 4427 aa4.29□□□□□ -1.72
PTPN4-201ENST00000263708 KMT2AQ03164 3969 aa4.27□□□□□ -1.73
PTPN4-201ENST00000263708 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
PTPN4-201ENST00000263708 MT2AP02795 61 aa4.23□□□□□ -1.73
PTPN4-201ENST00000263708 KRTAP4-1Q9BYQ7 146 aa4.22□□□□□ -1.73
PTPN4-201ENST00000263708 SPRR2GQ9BYE4 73 aa4.21□□□□□ -1.74
PTPN4-201ENST00000263708 SPRR2DP22532 72 aa4.2□□□□□ -1.74
PTPN4-201ENST00000263708 MT1FP04733 61 aa4.15□□□□□ -1.75
PTPN4-201ENST00000263708 DNAH6Q9C0G6 4158 aa4.14□□□□□ -1.75
PTPN4-201ENST00000263708 LCE2BO14633 110 aa4.13□□□□□ -1.75
PTPN4-201ENST00000263708 KRTAP12-4P60329 112 aa4.13□□□□□ -1.75
PTPN4-201ENST00000263708 MT1GP13640 62 aa4.08□□□□□ -1.76
PTPN4-201ENST00000263708 PRKDCP78527 4128 aaKnown RBP4.03□□□□□ -1.76
PTPN4-201ENST00000263708 KRTAP19-4Q3LI73 84 aa4□□□□□ -1.77
PTPN4-201ENST00000263708 FAT2Q9NYQ8 4349 aa3.96□□□□□ -1.78
PTPN4-201ENST00000263708 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
PTPN4-201ENST00000263708 PKHD1P08F94 4074 aa3.93□□□□□ -1.78
PTPN4-201ENST00000263708 LCE2CQ5TA81 110 aa3.92□□□□□ -1.78
PTPN4-201ENST00000263708 DNAH9Q9NYC9 4486 aa3.91□□□□□ -1.78
PTPN4-201ENST00000263708 DNAH10Q8IVF4 4471 aa3.9□□□□□ -1.78
PTPN4-201ENST00000263708 DNAH8Q96JB1 4490 aa3.89□□□□□ -1.79
PTPN4-201ENST00000263708 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
PTPN4-201ENST00000263708 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
PTPN4-201ENST00000263708 DNAH11Q96DT5 4516 aa3.86□□□□□ -1.79
PTPN4-201ENST00000263708 DNAH17Q9UFH2 4485 aa3.85□□□□□ -1.79
PTPN4-201ENST00000263708 LCE2DQ5TA82 110 aaPredicted RBP3.85□□□□□ -1.79
PTPN4-201ENST00000263708 FLGP20930 4061 aaPredicted RBP3.85□□□□□ -1.79
PTPN4-201ENST00000263708 STARD9Q9P2P6 4700 aa3.85□□□□□ -1.79
PTPN4-201ENST00000263708 VPS13DQ5THJ4 4388 aa3.81□□□□□ -1.8
PTPN4-201ENST00000263708 MT4P47944 62 aa3.8□□□□□ -1.8
PTPN4-201ENST00000263708 MT1XP80297 61 aa3.79□□□□□ -1.8
PTPN4-201ENST00000263708 DYNC2H1Q8NCM8 4307 aaKnown RBP3.77□□□□□ -1.81
PTPN4-201ENST00000263708 KRTAP4-8A0A0G2JLE6 195 aa3.77□□□□□ -1.81
PTPN4-201ENST00000263708 KRTAP4-8Q9BYQ9 185 aa3.77□□□□□ -1.81
PTPN4-201ENST00000263708 KRTAP19-1Q8IUB9 90 aa3.74□□□□□ -1.81
PTPN4-201ENST00000263708 KRTAP19-8Q3LI54 63 aa3.73□□□□□ -1.81
PTPN4-201ENST00000263708 DNAH5Q8TE73 4624 aa3.73□□□□□ -1.81
PTPN4-201ENST00000263708 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
PTPN4-201ENST00000263708 LCE1DQ5T752 114 aa3.67□□□□□ -1.82
PTPN4-201ENST00000263708 KRTAP17-1Q9BYP8 105 aa3.67□□□□□ -1.82
PTPN4-201ENST00000263708 PRM1P04553 51 aa3.67□□□□□ -1.82
PTPN4-201ENST00000263708 PKHD1L1Q86WI1 4243 aa3.66□□□□□ -1.82
PTPN4-201ENST00000263708 DYNC1H1Q14204 4646 aaKnown RBP3.66□□□□□ -1.82
PTPN4-201ENST00000263708 PLECQ15149 4684 aaKnown RBP3.65□□□□□ -1.83
PTPN4-201ENST00000263708 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
PTPN4-201ENST00000263708 MT1BP07438 61 aa3.6□□□□□ -1.83
PTPN4-201ENST00000263708 FAT1Q14517 4588 aa3.58□□□□□ -1.84
PTPN4-201ENST00000263708 KRTAP4-7Q9BYR0 210 aa3.58□□□□□ -1.84
PTPN4-201ENST00000263708 LRP1Q07954 4544 aaKnown RBP3.57□□□□□ -1.84
PTPN4-201ENST00000263708 MT3P25713 68 aa3.57□□□□□ -1.84
PTPN4-201ENST00000263708 LRP1BQ9NZR2 4599 aa3.55□□□□□ -1.84
PTPN4-201ENST00000263708 PKD1P98161 4303 aa3.54□□□□□ -1.84
PTPN4-201ENST00000263708 KRTAP9-8Q9BYQ0 159 aa3.54□□□□□ -1.84
PTPN4-201ENST00000263708 DNHD1Q96M86 4753 aa3.54□□□□□ -1.84
PTPN4-201ENST00000263708 RYR3Q15413 4870 aa3.54□□□□□ -1.84
PTPN4-201ENST00000263708 MT1LQ93083 61 aa3.52□□□□□ -1.85
PTPN4-201ENST00000263708 LCE5AQ5TCM9 118 aa3.5□□□□□ -1.85
PTPN4-201ENST00000263708 KRTAP9-3Q9BYQ3 159 aa3.49□□□□□ -1.85
PTPN4-201ENST00000263708 LOC100996750A0A140TA64 210 aa3.48□□□□□ -1.85
PTPN4-201ENST00000263708 APOBP04114 4563 aaKnown RBP3.46□□□□□ -1.86
PTPN4-201ENST00000263708 PCLOQ9Y6V0 5065 aa3.45□□□□□ -1.86
PTPN4-201ENST00000263708 MT1EP04732 61 aa3.45□□□□□ -1.86
PTPN4-201ENST00000263708 SACSQ9NZJ4 4579 aa3.41□□□□□ -1.86
PTPN4-201ENST00000263708 MT1MQ8N339 61 aa3.41□□□□□ -1.86
PTPN4-201ENST00000263708 RYR1P21817 5038 aa3.39□□□□□ -1.87
PTPN4-201ENST00000263708 LCE1CQ5T751 118 aa3.36□□□□□ -1.87
PTPN4-201ENST00000263708 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
PTPN4-201ENST00000263708 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
PTPN4-201ENST00000263708 LCE1AQ5T7P2 110 aa3.36□□□□□ -1.87
PTPN4-201ENST00000263708 KRTAP4-3Q9BYR4 195 aa3.36□□□□□ -1.87
PTPN4-201ENST00000263708 HSPG2P98160 4391 aa3.35□□□□□ -1.87
PTPN4-201ENST00000263708 FAT3Q8TDW7 4589 aa3.35□□□□□ -1.87
PTPN4-201ENST00000263708 KRTAP9-2Q9BYQ4 174 aa3.33□□□□□ -1.88
PTPN4-201ENST00000263708 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
PTPN4-201ENST00000263708 TNXBP22105 4242 aa3.32□□□□□ -1.88
PTPN4-201ENST00000263708 KRTAP20-1Q3LI63 56 aa3.29□□□□□ -1.88
PTPN4-201ENST00000263708 KRTAP4-9Q9BYQ8 210 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms