RNA–Protein interactions for RNA: ENST00000261609.11

HERC2-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC2, Length 15,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-201ENST00000261609 ANK2Q01484 3957 aa3.28□□□□□ -1.88
HERC2-201ENST00000261609 LYSTQ99698 3801 aa3.27□□□□□ -1.89
HERC2-201ENST00000261609 KRTAP3-3Q9BYR6 98 aa3.25□□□□□ -1.89
HERC2-201ENST00000261609 KRTAP23-1A1A580 65 aa3.24□□□□□ -1.89
HERC2-201ENST00000261609 DNAH8Q96JB1 4490 aa3.24□□□□□ -1.89
HERC2-201ENST00000261609 FRAS1Q86XX4 4008 aa3.24□□□□□ -1.89
HERC2-201ENST00000261609 DNAH17Q9UFH2 4485 aa3.23□□□□□ -1.89
HERC2-201ENST00000261609 MUC3AQ02505 3323 aa3.23□□□□□ -1.89
HERC2-201ENST00000261609 VPS13BQ7Z7G8 4022 aa3.21□□□□□ -1.9
HERC2-201ENST00000261609 VPS13DQ5THJ4 4388 aa3.18□□□□□ -1.9
HERC2-201ENST00000261609 DNAH6Q9C0G6 4158 aa3.18□□□□□ -1.9
HERC2-201ENST00000261609 KRTAP10-12P60413 245 aa3.18□□□□□ -1.9
HERC2-201ENST00000261609 KMT2AQ03164 3969 aa3.16□□□□□ -1.9
HERC2-201ENST00000261609 KRTAP12-3P60328 96 aa3.1□□□□□ -1.91
HERC2-201ENST00000261609 PRKDCP78527 4128 aaKnown RBP3.1□□□□□ -1.91
HERC2-201ENST00000261609 DNAH9Q9NYC9 4486 aa3.09□□□□□ -1.91
HERC2-201ENST00000261609 APOBP04114 4563 aaKnown RBP3.07□□□□□ -1.92
HERC2-201ENST00000261609 CSMD2Q7Z408 3487 aa3.06□□□□□ -1.92
HERC2-201ENST00000261609 LCE3AQ5TA76 89 aa3.06□□□□□ -1.92
HERC2-201ENST00000261609 PLECQ15149 4684 aaKnown RBP3.04□□□□□ -1.92
HERC2-201ENST00000261609 MT1HL1P0DM35 61 aa3.04□□□□□ -1.92
HERC2-201ENST00000261609 FLGP20930 4061 aaPredicted RBP3.04□□□□□ -1.92
HERC2-201ENST00000261609 FAT1Q14517 4588 aa3.03□□□□□ -1.92
HERC2-201ENST00000261609 CRCT1Q9UGL9 99 aa3.02□□□□□ -1.93
HERC2-201ENST00000261609 DYNC2H1Q8NCM8 4307 aaKnown RBP2.99□□□□□ -1.93
HERC2-201ENST00000261609 KRTAP10-5P60370 271 aa2.98□□□□□ -1.93
HERC2-201ENST00000261609 LORP23490 312 aaPredicted RBP2.98□□□□□ -1.93
HERC2-201ENST00000261609 FAT2Q9NYQ8 4349 aa2.97□□□□□ -1.93
HERC2-201ENST00000261609 KRTAP10-4P60372 401 aaPredicted RBP2.97□□□□□ -1.93
HERC2-201ENST00000261609 DYNC1H1Q14204 4646 aaKnown RBP2.94□□□□□ -1.94
HERC2-201ENST00000261609 DNAH5Q8TE73 4624 aa2.93□□□□□ -1.94
HERC2-201ENST00000261609 SACSQ9NZJ4 4579 aa2.9□□□□□ -1.95
HERC2-201ENST00000261609 PKHD1P08F94 4074 aa2.89□□□□□ -1.95
HERC2-201ENST00000261609 LRP1BQ9NZR2 4599 aa2.89□□□□□ -1.95
HERC2-201ENST00000261609 LRP1Q07954 4544 aaKnown RBP2.86□□□□□ -1.95
HERC2-201ENST00000261609 MYCBP2O75592 4640 aa2.84□□□□□ -1.95
HERC2-201ENST00000261609 PKHD1L1Q86WI1 4243 aa2.84□□□□□ -1.95
HERC2-201ENST00000261609 KRTAP4-5Q9BYR2 181 aa2.82□□□□□ -1.96
HERC2-201ENST00000261609 PKD1P98161 4303 aa2.82□□□□□ -1.96
HERC2-201ENST00000261609 DNHD1Q96M86 4753 aa2.82□□□□□ -1.96
HERC2-201ENST00000261609 FAT3Q8TDW7 4589 aa2.81□□□□□ -1.96
HERC2-201ENST00000261609 KRTAP8-1Q8IUC2 63 aa2.8□□□□□ -1.96
HERC2-201ENST00000261609 STARD9Q9P2P6 4700 aa2.79□□□□□ -1.96
HERC2-201ENST00000261609 RYR1P21817 5038 aa2.78□□□□□ -1.96
HERC2-201ENST00000261609 TNXBP22105 4242 aa2.78□□□□□ -1.97
HERC2-201ENST00000261609 LCE3CQ5T5A8 94 aa2.77□□□□□ -1.97
HERC2-201ENST00000261609 HSPG2P98160 4391 aa2.75□□□□□ -1.97
HERC2-201ENST00000261609 SPRR2GQ9BYE4 73 aa2.75□□□□□ -1.97
HERC2-201ENST00000261609 KRTAP19-5Q3LI72 72 aa2.73□□□□□ -1.97
HERC2-201ENST00000261609 KRTAP19-4Q3LI73 84 aa2.72□□□□□ -1.97
HERC2-201ENST00000261609 RYR3Q15413 4870 aa2.7□□□□□ -1.98
HERC2-201ENST00000261609 KRTAP4-1Q9BYQ7 146 aa2.69□□□□□ -1.98
HERC2-201ENST00000261609 BIRC6Q9NR09 4857 aa2.69□□□□□ -1.98
HERC2-201ENST00000261609 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
HERC2-201ENST00000261609 MT1HP80294 61 aa2.66□□□□□ -1.98
HERC2-201ENST00000261609 MT2AP02795 61 aa2.64□□□□□ -1.99
HERC2-201ENST00000261609 SPRR5A0A1B0GTR4 108 aa2.63□□□□□ -1.99
HERC2-201ENST00000261609 KRTAP10-7P60409 375 aaPredicted RBP2.61□□□□□ -1.99
HERC2-201ENST00000261609 MT1FP04733 61 aa2.6□□□□□ -1.99
HERC2-201ENST00000261609 RYR2Q92736 4967 aa2.54□□□□□ -2
HERC2-201ENST00000261609 SPRR2FQ96RM1 72 aa2.54□□□□□ -2
HERC2-201ENST00000261609 PCLOQ9Y6V0 5065 aa2.52□□□□□ -2.01
HERC2-201ENST00000261609 HYDINQ4G0P3 5121 aa2.51□□□□□ -2.01
HERC2-201ENST00000261609 KRTAP19-8Q3LI54 63 aa2.51□□□□□ -2.01
HERC2-201ENST00000261609 LCE3BQ5TA77 95 aa2.5□□□□□ -2.01
HERC2-201ENST00000261609 ABCA13Q86UQ4 5058 aa2.5□□□□□ -2.01
HERC2-201ENST00000261609 MT1XP80297 61 aa2.49□□□□□ -2.01
HERC2-201ENST00000261609 EPPK1P58107 5090 aaKnown RBP2.47□□□□□ -2.01
HERC2-201ENST00000261609 KRTAP19-1Q8IUB9 90 aa2.46□□□□□ -2.02
HERC2-201ENST00000261609 MT1GP13640 62 aa2.42□□□□□ -2.02
HERC2-201ENST00000261609 UBR4Q5T4S7 5183 aa2.42□□□□□ -2.02
HERC2-201ENST00000261609 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
HERC2-201ENST00000261609 KMT2CQ8NEZ4 4911 aaKnown RBP2.41□□□□□ -2.02
HERC2-201ENST00000261609 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.02
HERC2-201ENST00000261609 MUC17Q685J3 4493 aa2.4□□□□□ -2.03
HERC2-201ENST00000261609 LRP2P98164 4655 aa2.38□□□□□ -2.03
HERC2-201ENST00000261609 MT1BP07438 61 aa2.37□□□□□ -2.03
HERC2-201ENST00000261609 HERC2O95714 4834 aa2.37□□□□□ -2.03
HERC2-201ENST00000261609 MT3P25713 68 aa2.37□□□□□ -2.03
HERC2-201ENST00000261609 HERC1Q15751 4861 aa2.36□□□□□ -2.03
HERC2-201ENST00000261609 RNF213Q63HN8 5207 aa2.36□□□□□ -2.03
HERC2-201ENST00000261609 MUC12Q9UKN1 5478 aa2.36□□□□□ -2.03
HERC2-201ENST00000261609 SPRR2EP22531 72 aa2.35□□□□□ -2.03
HERC2-201ENST00000261609 SPRR2BP35325 72 aa2.35□□□□□ -2.03
HERC2-201ENST00000261609 SPRR2AP35326 72 aa2.35□□□□□ -2.03
HERC2-201ENST00000261609 PRM1P04553 51 aa2.33□□□□□ -2.04
HERC2-201ENST00000261609 KRTAP4-8A0A0G2JLE6 195 aa2.32□□□□□ -2.04
HERC2-201ENST00000261609 KRTAP4-8Q9BYQ9 185 aa2.32□□□□□ -2.04
HERC2-201ENST00000261609 KRTAP9-8Q9BYQ0 159 aa2.32□□□□□ -2.04
HERC2-201ENST00000261609 KIAA1109Q2LD37 5005 aa2.3□□□□□ -2.04
HERC2-201ENST00000261609 LCE2BO14633 110 aa2.3□□□□□ -2.04
HERC2-201ENST00000261609 GPR98Q8WXG9 6306 aa2.3□□□□□ -2.04
HERC2-201ENST00000261609 KRTAP9-3Q9BYQ3 159 aa2.29□□□□□ -2.04
HERC2-201ENST00000261609 MT1LQ93083 61 aa2.28□□□□□ -2.04
HERC2-201ENST00000261609 KRTAP4-7Q9BYR0 210 aa2.28□□□□□ -2.04
HERC2-201ENST00000261609 SPRR2DP22532 72 aa2.28□□□□□ -2.04
HERC2-201ENST00000261609 LPAP08519 4548 aa2.27□□□□□ -2.05
HERC2-201ENST00000261609 HMCN2Q8NDA2 5059 aa2.25□□□□□ -2.05
HERC2-201ENST00000261609 KRTAP19-3Q7Z4W3 81 aa2.25□□□□□ -2.05
HERC2-201ENST00000261609 MT1EP04732 61 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms