RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 ZFHX3Q15911 3703 aa3.59□□□□□ -1.84
PTCD3-201ENST00000254630 MT1HP80294 61 aa3.59□□□□□ -1.84
PTCD3-201ENST00000254630 CUBNO60494 3623 aa3.58□□□□□ -1.84
PTCD3-201ENST00000254630 CMYA5Q8N3K9 4069 aa3.57□□□□□ -1.84
PTCD3-201ENST00000254630 DNAH17Q9UFH2 4485 aa3.57□□□□□ -1.84
PTCD3-201ENST00000254630 DNAH7Q8WXX0 4024 aa3.57□□□□□ -1.84
PTCD3-201ENST00000254630 CSMD2Q7Z408 3487 aa3.56□□□□□ -1.84
PTCD3-201ENST00000254630 KRTAP4-1Q9BYQ7 146 aa3.55□□□□□ -1.84
PTCD3-201ENST00000254630 VPS13DQ5THJ4 4388 aa3.55□□□□□ -1.84
PTCD3-201ENST00000254630 FAT2Q9NYQ8 4349 aa3.53□□□□□ -1.84
PTCD3-201ENST00000254630 KRTAP10-5P60370 271 aa3.53□□□□□ -1.84
PTCD3-201ENST00000254630 DYNC2H1Q8NCM8 4307 aaKnown RBP3.52□□□□□ -1.85
PTCD3-201ENST00000254630 VWFP04275 2813 aa3.52□□□□□ -1.85
PTCD3-201ENST00000254630 PRKDCP78527 4128 aaKnown RBP3.49□□□□□ -1.85
PTCD3-201ENST00000254630 DNAH8Q96JB1 4490 aa3.48□□□□□ -1.85
PTCD3-201ENST00000254630 ANK2Q01484 3957 aa3.47□□□□□ -1.85
PTCD3-201ENST00000254630 PLECQ15149 4684 aaKnown RBP3.47□□□□□ -1.85
PTCD3-201ENST00000254630 MT2AP02795 61 aa3.47□□□□□ -1.85
PTCD3-201ENST00000254630 ZNF469Q96JG9 3925 aaPredicted RBP3.45□□□□□ -1.86
PTCD3-201ENST00000254630 DNAH5Q8TE73 4624 aa3.44□□□□□ -1.86
PTCD3-201ENST00000254630 DYNC1H1Q14204 4646 aaKnown RBP3.44□□□□□ -1.86
PTCD3-201ENST00000254630 SPRR2GQ9BYE4 73 aa3.44□□□□□ -1.86
PTCD3-201ENST00000254630 PKD1L1Q8TDX9 2849 aa3.43□□□□□ -1.86
PTCD3-201ENST00000254630 MEGF8Q7Z7M0 2845 aa3.42□□□□□ -1.86
PTCD3-201ENST00000254630 FBN3Q75N90 2809 aa3.4□□□□□ -1.86
PTCD3-201ENST00000254630 MT1FP04733 61 aa3.4□□□□□ -1.87
PTCD3-201ENST00000254630 MUC3AQ02505 3323 aa3.39□□□□□ -1.87
PTCD3-201ENST00000254630 KRTAP19-5Q3LI72 72 aa3.38□□□□□ -1.87
PTCD3-201ENST00000254630 SACSQ9NZJ4 4579 aa3.38□□□□□ -1.87
PTCD3-201ENST00000254630 STARD9Q9P2P6 4700 aa3.38□□□□□ -1.87
PTCD3-201ENST00000254630 SPRR2FQ96RM1 72 aa3.38□□□□□ -1.87
PTCD3-201ENST00000254630 KRTAP10-7P60409 375 aaPredicted RBP3.36□□□□□ -1.87
PTCD3-201ENST00000254630 CSMD3Q7Z407 3707 aa3.35□□□□□ -1.87
PTCD3-201ENST00000254630 FRAS1Q86XX4 4008 aa3.35□□□□□ -1.87
PTCD3-201ENST00000254630 LRP1BQ9NZR2 4599 aa3.34□□□□□ -1.87
PTCD3-201ENST00000254630 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
PTCD3-201ENST00000254630 KMT2AQ03164 3969 aa3.31□□□□□ -1.88
PTCD3-201ENST00000254630 VPS13BQ7Z7G8 4022 aa3.31□□□□□ -1.88
PTCD3-201ENST00000254630 SPRR2EP22531 72 aa3.26□□□□□ -1.89
PTCD3-201ENST00000254630 SPRR2BP35325 72 aa3.26□□□□□ -1.89
PTCD3-201ENST00000254630 SPRR2AP35326 72 aa3.26□□□□□ -1.89
PTCD3-201ENST00000254630 PKHD1L1Q86WI1 4243 aa3.25□□□□□ -1.89
PTCD3-201ENST00000254630 HECTD4Q9Y4D8 3996 aa3.25□□□□□ -1.89
PTCD3-201ENST00000254630 APOBP04114 4563 aaKnown RBP3.21□□□□□ -1.9
PTCD3-201ENST00000254630 COL7A1Q02388 2944 aa3.2□□□□□ -1.9
PTCD3-201ENST00000254630 FAT1Q14517 4588 aa3.19□□□□□ -1.9
PTCD3-201ENST00000254630 KRTAP19-4Q3LI73 84 aa3.19□□□□□ -1.9
PTCD3-201ENST00000254630 SRRM2Q9UQ35 2752 aaKnown RBP3.17□□□□□ -1.9
PTCD3-201ENST00000254630 KRTAP19-8Q3LI54 63 aa3.17□□□□□ -1.9
PTCD3-201ENST00000254630 FAT3Q8TDW7 4589 aa3.16□□□□□ -1.9
PTCD3-201ENST00000254630 SPRR2DP22532 72 aa3.16□□□□□ -1.9
PTCD3-201ENST00000254630 KRTAP17-1Q9BYP8 105 aa3.15□□□□□ -1.91
PTCD3-201ENST00000254630 HSPG2P98160 4391 aa3.14□□□□□ -1.91
PTCD3-201ENST00000254630 LYSTQ99698 3801 aa3.12□□□□□ -1.91
PTCD3-201ENST00000254630 MT1XP80297 61 aa3.12□□□□□ -1.91
PTCD3-201ENST00000254630 PKD1P98161 4303 aa3.11□□□□□ -1.91
PTCD3-201ENST00000254630 MUC17Q685J3 4493 aa3.11□□□□□ -1.91
PTCD3-201ENST00000254630 HERC1Q15751 4861 aa3.11□□□□□ -1.91
PTCD3-201ENST00000254630 LCE3BQ5TA77 95 aa3.1□□□□□ -1.91
PTCD3-201ENST00000254630 LCE2BO14633 110 aa3.1□□□□□ -1.91
PTCD3-201ENST00000254630 KRTAP19-1Q8IUB9 90 aa3.1□□□□□ -1.91
PTCD3-201ENST00000254630 MT1GP13640 62 aa3.07□□□□□ -1.92
PTCD3-201ENST00000254630 MT1BP07438 61 aa3.06□□□□□ -1.92
PTCD3-201ENST00000254630 KRTAP9-8Q9BYQ0 159 aa3.05□□□□□ -1.92
PTCD3-201ENST00000254630 PKHD1P08F94 4074 aa3.03□□□□□ -1.92
PTCD3-201ENST00000254630 TNXBP22105 4242 aa3.03□□□□□ -1.93
PTCD3-201ENST00000254630 KRTAP9-3Q9BYQ3 159 aa3□□□□□ -1.93
PTCD3-201ENST00000254630 RYR3Q15413 4870 aa3□□□□□ -1.93
PTCD3-201ENST00000254630 KRTAP12-4P60329 112 aa2.99□□□□□ -1.93
PTCD3-201ENST00000254630 LRP1Q07954 4544 aaKnown RBP2.98□□□□□ -1.93
PTCD3-201ENST00000254630 KRTAP4-8A0A0G2JLE6 195 aa2.97□□□□□ -1.93
PTCD3-201ENST00000254630 KRTAP4-8Q9BYQ9 185 aa2.97□□□□□ -1.93
PTCD3-201ENST00000254630 LCE2CQ5TA81 110 aa2.97□□□□□ -1.93
PTCD3-201ENST00000254630 DNHD1Q96M86 4753 aa2.95□□□□□ -1.94
PTCD3-201ENST00000254630 RYR1P21817 5038 aa2.95□□□□□ -1.94
PTCD3-201ENST00000254630 MYCBP2O75592 4640 aa2.94□□□□□ -1.94
PTCD3-201ENST00000254630 RYR2Q92736 4967 aa2.9□□□□□ -1.95
PTCD3-201ENST00000254630 LPAP08519 4548 aa2.9□□□□□ -1.95
PTCD3-201ENST00000254630 KRTAP19-3Q7Z4W3 81 aa2.87□□□□□ -1.95
PTCD3-201ENST00000254630 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
PTCD3-201ENST00000254630 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
PTCD3-201ENST00000254630 LCE2DQ5TA82 110 aaPredicted RBP2.84□□□□□ -1.96
PTCD3-201ENST00000254630 MT1LQ93083 61 aa2.83□□□□□ -1.96
PTCD3-201ENST00000254630 HYDINQ4G0P3 5121 aa2.82□□□□□ -1.96
PTCD3-201ENST00000254630 MT1EP04732 61 aa2.81□□□□□ -1.96
PTCD3-201ENST00000254630 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
PTCD3-201ENST00000254630 KRTAP4-7Q9BYR0 210 aa2.79□□□□□ -1.96
PTCD3-201ENST00000254630 KRTAP19-2Q3LHN2 52 aa2.78□□□□□ -1.96
PTCD3-201ENST00000254630 FLGP20930 4061 aaPredicted RBP2.77□□□□□ -1.97
PTCD3-201ENST00000254630 MT4P47944 62 aa2.76□□□□□ -1.97
PTCD3-201ENST00000254630 KRTAP19-6Q3LI70 58 aa2.74□□□□□ -1.97
PTCD3-201ENST00000254630 KRTAP9-2Q9BYQ4 174 aa2.74□□□□□ -1.97
PTCD3-201ENST00000254630 MT1MQ8N339 61 aa2.74□□□□□ -1.97
PTCD3-201ENST00000254630 BIRC6Q9NR09 4857 aa2.7□□□□□ -1.98
PTCD3-201ENST00000254630 LOC100996750A0A140TA64 210 aa2.7□□□□□ -1.98
PTCD3-201ENST00000254630 MT3P25713 68 aa2.69□□□□□ -1.98
PTCD3-201ENST00000254630 KRTAP4-3Q9BYR4 195 aa2.65□□□□□ -1.99
PTCD3-201ENST00000254630 PRM1P04553 51 aa2.63□□□□□ -1.99
PTCD3-201ENST00000254630 HERC2O95714 4834 aa2.62□□□□□ -1.99
PTCD3-201ENST00000254630 KRTAP9-6A0A140TA67 174 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms