RNA–Protein interactions for RNA: ENST00000244728.9

COL21A1-201, Transcript of collagen type XXI alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL21A1, Length 4,339 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-201ENST00000244728 DNAH8Q96JB1 4490 aa4.5□□□□□ -1.69
COL21A1-201ENST00000244728 FRAS1Q86XX4 4008 aa4.5□□□□□ -1.69
COL21A1-201ENST00000244728 KRTAP4-5Q9BYR2 181 aa4.5□□□□□ -1.69
COL21A1-201ENST00000244728 MT1HL1P0DM35 61 aa4.48□□□□□ -1.69
COL21A1-201ENST00000244728 PP632Q6XCG6 107 aa4.45□□□□□ -1.7
COL21A1-201ENST00000244728 ALMS1Q8TCU4 4167 aa4.45□□□□□ -1.7
COL21A1-201ENST00000244728 STARD9Q9P2P6 4700 aa4.45□□□□□ -1.7
COL21A1-201ENST00000244728 DNAH17Q9UFH2 4485 aa4.45□□□□□ -1.7
COL21A1-201ENST00000244728 KRTAP10-4P60372 401 aaPredicted RBP4.45□□□□□ -1.7
COL21A1-201ENST00000244728 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
COL21A1-201ENST00000244728 DNAH5Q8TE73 4624 aa4.44□□□□□ -1.7
COL21A1-201ENST00000244728 VPS13DQ5THJ4 4388 aa4.44□□□□□ -1.7
COL21A1-201ENST00000244728 DNAH3Q8TD57 4116 aa4.43□□□□□ -1.7
COL21A1-201ENST00000244728 FAT1Q14517 4588 aa4.4□□□□□ -1.7
COL21A1-201ENST00000244728 LRP1BQ9NZR2 4599 aa4.39□□□□□ -1.71
COL21A1-201ENST00000244728 KMT2AQ03164 3969 aa4.37□□□□□ -1.71
COL21A1-201ENST00000244728 DNAH2Q9P225 4427 aa4.37□□□□□ -1.71
COL21A1-201ENST00000244728 PRKDCP78527 4128 aaKnown RBP4.36□□□□□ -1.71
COL21A1-201ENST00000244728 FAT2Q9NYQ8 4349 aa4.34□□□□□ -1.71
COL21A1-201ENST00000244728 RYR1P21817 5038 aa4.29□□□□□ -1.72
COL21A1-201ENST00000244728 HECTD4Q9Y4D8 3996 aa4.28□□□□□ -1.72
COL21A1-201ENST00000244728 KIAA1109Q2LD37 5005 aa4.28□□□□□ -1.72
COL21A1-201ENST00000244728 MYCBP2O75592 4640 aa4.27□□□□□ -1.73
COL21A1-201ENST00000244728 HYDINQ4G0P3 5121 aa4.26□□□□□ -1.73
COL21A1-201ENST00000244728 DYNC1H1Q14204 4646 aaKnown RBP4.25□□□□□ -1.73
COL21A1-201ENST00000244728 VPS13BQ7Z7G8 4022 aa4.25□□□□□ -1.73
COL21A1-201ENST00000244728 DNAH6Q9C0G6 4158 aa4.25□□□□□ -1.73
COL21A1-201ENST00000244728 PRO2289Q9P1D8 64 aa4.22□□□□□ -1.73
COL21A1-201ENST00000244728 DYNC2H1Q8NCM8 4307 aaKnown RBP4.2□□□□□ -1.74
COL21A1-201ENST00000244728 LORP23490 312 aaPredicted RBP4.18□□□□□ -1.74
COL21A1-201ENST00000244728 FAT3Q8TDW7 4589 aa4.18□□□□□ -1.74
COL21A1-201ENST00000244728 SACSQ9NZJ4 4579 aa4.16□□□□□ -1.74
COL21A1-201ENST00000244728 KMT2CQ8NEZ4 4911 aaKnown RBP4.15□□□□□ -1.74
COL21A1-201ENST00000244728 PKHD1P08F94 4074 aa4.14□□□□□ -1.75
COL21A1-201ENST00000244728 RYR3Q15413 4870 aa4.12□□□□□ -1.75
COL21A1-201ENST00000244728 LRP1Q07954 4544 aaKnown RBP4.11□□□□□ -1.75
COL21A1-201ENST00000244728 KRTAP4-1Q9BYQ7 146 aa4.08□□□□□ -1.76
COL21A1-201ENST00000244728 APOBP04114 4563 aaKnown RBP4.07□□□□□ -1.76
COL21A1-201ENST00000244728 PKD1P98161 4303 aa4.04□□□□□ -1.76
COL21A1-201ENST00000244728 KRTAP17-1Q9BYP8 105 aa4.04□□□□□ -1.76
COL21A1-201ENST00000244728 LRP2P98164 4655 aa3.96□□□□□ -1.78
COL21A1-201ENST00000244728 HERC2O95714 4834 aa3.91□□□□□ -1.78
COL21A1-201ENST00000244728 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
COL21A1-201ENST00000244728 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
COL21A1-201ENST00000244728 LCE3AQ5TA76 89 aa3.88□□□□□ -1.79
COL21A1-201ENST00000244728 RYR2Q92736 4967 aa3.85□□□□□ -1.79
COL21A1-201ENST00000244728 EPPK1P58107 5090 aaKnown RBP3.84□□□□□ -1.79
COL21A1-201ENST00000244728 HSPG2P98160 4391 aa3.84□□□□□ -1.8
COL21A1-201ENST00000244728 CRCT1Q9UGL9 99 aa3.84□□□□□ -1.8
COL21A1-201ENST00000244728 INE1O15225 51 aa3.83□□□□□ -1.8
COL21A1-201ENST00000244728 KRTAP12-3P60328 96 aa3.83□□□□□ -1.8
COL21A1-201ENST00000244728 MT1HP80294 61 aa3.83□□□□□ -1.8
COL21A1-201ENST00000244728 PCLOQ9Y6V0 5065 aa3.82□□□□□ -1.8
COL21A1-201ENST00000244728 MT2AP02795 61 aa3.79□□□□□ -1.8
COL21A1-201ENST00000244728 LPAP08519 4548 aa3.78□□□□□ -1.8
COL21A1-201ENST00000244728 ABCA13Q86UQ4 5058 aa3.77□□□□□ -1.81
COL21A1-201ENST00000244728 PKHD1L1Q86WI1 4243 aa3.76□□□□□ -1.81
COL21A1-201ENST00000244728 MT1FP04733 61 aa3.76□□□□□ -1.81
COL21A1-201ENST00000244728 MUC2Q02817 5179 aa3.72□□□□□ -1.81
COL21A1-201ENST00000244728 SPRR2GQ9BYE4 73 aa3.7□□□□□ -1.82
COL21A1-201ENST00000244728 TNXBP22105 4242 aa3.69□□□□□ -1.82
COL21A1-201ENST00000244728 FSIP2Q5CZC0 6907 aa3.66□□□□□ -1.82
COL21A1-201ENST00000244728 SPRR5A0A1B0GTR4 108 aa3.63□□□□□ -1.83
COL21A1-201ENST00000244728 BIRC6Q9NR09 4857 aa3.62□□□□□ -1.83
COL21A1-201ENST00000244728 KRTAP19-1Q8IUB9 90 aa3.62□□□□□ -1.83
COL21A1-201ENST00000244728 KRTAP8-1Q8IUC2 63 aa3.61□□□□□ -1.83
COL21A1-201ENST00000244728 RNF213Q63HN8 5207 aa3.56□□□□□ -1.84
COL21A1-201ENST00000244728 HERC1Q15751 4861 aa3.56□□□□□ -1.84
COL21A1-201ENST00000244728 KRTAP19-2Q3LHN2 52 aa3.56□□□□□ -1.84
COL21A1-201ENST00000244728 UBR4Q5T4S7 5183 aa3.53□□□□□ -1.84
COL21A1-201ENST00000244728 LCE2CQ5TA81 110 aa3.53□□□□□ -1.85
COL21A1-201ENST00000244728 KRTAP19-5Q3LI72 72 aa3.51□□□□□ -1.85
COL21A1-201ENST00000244728 KRTAP10-7P60409 375 aaPredicted RBP3.51□□□□□ -1.85
COL21A1-201ENST00000244728 KRTAP9-8Q9BYQ0 159 aa3.5□□□□□ -1.85
COL21A1-201ENST00000244728 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
COL21A1-201ENST00000244728 MUC17Q685J3 4493 aa3.49□□□□□ -1.85
COL21A1-201ENST00000244728 KRTAP10-5P60370 271 aa3.48□□□□□ -1.85
COL21A1-201ENST00000244728 KRTAP19-8Q3LI54 63 aa3.46□□□□□ -1.86
COL21A1-201ENST00000244728 MT1XP80297 61 aa3.45□□□□□ -1.86
COL21A1-201ENST00000244728 MT1BP07438 61 aa3.45□□□□□ -1.86
COL21A1-201ENST00000244728 FAT4Q6V0I7 4981 aa3.44□□□□□ -1.86
COL21A1-201ENST00000244728 SPRR2FQ96RM1 72 aa3.44□□□□□ -1.86
COL21A1-201ENST00000244728 LCE3CQ5T5A8 94 aa3.43□□□□□ -1.86
COL21A1-201ENST00000244728 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
COL21A1-201ENST00000244728 KRTAP4-8A0A0G2JLE6 195 aa3.42□□□□□ -1.86
COL21A1-201ENST00000244728 KRTAP4-8Q9BYQ9 185 aa3.42□□□□□ -1.86
COL21A1-201ENST00000244728 OBSCNQ5VST9 7968 aa3.42□□□□□ -1.86
COL21A1-201ENST00000244728 KRTAP9-3Q9BYQ3 159 aa3.37□□□□□ -1.87
COL21A1-201ENST00000244728 LCE2BO14633 110 aa3.31□□□□□ -1.88
COL21A1-201ENST00000244728 HMCN2Q8NDA2 5059 aa3.27□□□□□ -1.89
COL21A1-201ENST00000244728 KRTAP4-7Q9BYR0 210 aa3.23□□□□□ -1.89
COL21A1-201ENST00000244728 MT1GP13640 62 aa3.21□□□□□ -1.9
COL21A1-201ENST00000244728 LCE2DQ5TA82 110 aaPredicted RBP3.17□□□□□ -1.9
COL21A1-201ENST00000244728 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
COL21A1-201ENST00000244728 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
COL21A1-201ENST00000244728 SPRR2EP22531 72 aa3.14□□□□□ -1.91
COL21A1-201ENST00000244728 SPRR2BP35325 72 aa3.14□□□□□ -1.91
COL21A1-201ENST00000244728 SPRR2AP35326 72 aa3.14□□□□□ -1.91
COL21A1-201ENST00000244728 KRTAP19-4Q3LI73 84 aa3.13□□□□□ -1.91
COL21A1-201ENST00000244728 USH2AO75445 5202 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms