RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 COX6B2Q6YFQ2 88 aa6.51□□□□□ -1.37
NUP88-201ENST00000225696 FAT3Q8TDW7 4589 aa6.5□□□□□ -1.37
NUP88-201ENST00000225696 DMBT1Q9UGM3 2413 aaPredicted RBP6.5□□□□□ -1.37
NUP88-201ENST00000225696 TNXBP22105 4242 aa6.47□□□□□ -1.37
NUP88-201ENST00000225696 KRTAP13-4Q3LI77 160 aa6.42□□□□□ -1.38
NUP88-201ENST00000225696 H3BS24 57 aa6.41□□□□□ -1.38
NUP88-201ENST00000225696 KRTAP10-6P60371 365 aaPredicted RBP6.41□□□□□ -1.38
NUP88-201ENST00000225696 KMT2CQ8NEZ4 4911 aaKnown RBP6.41□□□□□ -1.38
NUP88-201ENST00000225696 RYR2Q92736 4967 aa6.4□□□□□ -1.38
NUP88-201ENST00000225696 KRTAP10-8P60410 259 aa6.38□□□□□ -1.39
NUP88-201ENST00000225696 ROMO1P60602 79 aa6.37□□□□□ -1.39
NUP88-201ENST00000225696 A0A0D9SG42 100 aa6.37□□□□□ -1.39
NUP88-201ENST00000225696 K7ERS5 55 aa6.34□□□□□ -1.39
NUP88-201ENST00000225696 LPAP08519 4548 aa6.34□□□□□ -1.39
NUP88-201ENST00000225696 RPL37P61927 97 aaKnown RBP6.3□□□□□ -1.4
NUP88-201ENST00000225696 P0C880 135 aa6.3□□□□□ -1.4
NUP88-201ENST00000225696 TPRXLQ17RH7 258 aa6.28□□□□□ -1.4
NUP88-201ENST00000225696 XP32Q5T750 250 aa6.25□□□□□ -1.41
NUP88-201ENST00000225696 C10orf95Q9H7T3 257 aa6.25□□□□□ -1.41
NUP88-201ENST00000225696 S4R3F8 94 aa6.25□□□□□ -1.41
NUP88-201ENST00000225696 Q5VSD8 79 aa6.22□□□□□ -1.41
NUP88-201ENST00000225696 LRP2P98164 4655 aa6.21□□□□□ -1.42
NUP88-201ENST00000225696 KRTAP12-2P59991 146 aa6.2□□□□□ -1.42
NUP88-201ENST00000225696 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
NUP88-201ENST00000225696 RYR1P21817 5038 aa6.15□□□□□ -1.42
NUP88-201ENST00000225696 RYR3Q15413 4870 aa6.15□□□□□ -1.43
NUP88-201ENST00000225696 KIAA1109Q2LD37 5005 aa6.14□□□□□ -1.43
NUP88-201ENST00000225696 KRTAP12-1P59990 96 aa6.11□□□□□ -1.43
NUP88-201ENST00000225696 SPINT4Q6UDR6 99 aa6.1□□□□□ -1.43
NUP88-201ENST00000225696 ABCA13Q86UQ4 5058 aa6.06□□□□□ -1.44
NUP88-201ENST00000225696 MT1HL1P0DM35 61 aa6.05□□□□□ -1.44
NUP88-201ENST00000225696 KRTAP15-1Q3LI76 137 aa6.01□□□□□ -1.45
NUP88-201ENST00000225696 NDUFAF8A1L188 74 aa5.94□□□□□ -1.46
NUP88-201ENST00000225696 M0QZ58 72 aa5.93□□□□□ -1.46
NUP88-201ENST00000225696 EPPK1P58107 5090 aaKnown RBP5.93□□□□□ -1.46
NUP88-201ENST00000225696 KRTAP4-5Q9BYR2 181 aa5.9□□□□□ -1.47
NUP88-201ENST00000225696 LORP23490 312 aaPredicted RBP5.87□□□□□ -1.47
NUP88-201ENST00000225696 MUC17Q685J3 4493 aa5.86□□□□□ -1.47
NUP88-201ENST00000225696 BIRC6Q9NR09 4857 aa5.86□□□□□ -1.47
NUP88-201ENST00000225696 J3QL48 77 aa5.84□□□□□ -1.47
NUP88-201ENST00000225696 LCE2BO14633 110 aa5.83□□□□□ -1.48
NUP88-201ENST00000225696 R4GN34 69 aa5.82□□□□□ -1.48
NUP88-201ENST00000225696 MUC2Q02817 5179 aa5.78□□□□□ -1.48
NUP88-201ENST00000225696 HERC2O95714 4834 aa5.78□□□□□ -1.48
NUP88-201ENST00000225696 KRTAP4-1Q9BYQ7 146 aa5.76□□□□□ -1.49
NUP88-201ENST00000225696 PLAC4Q8WY50 150 aa5.65□□□□□ -1.5
NUP88-201ENST00000225696 KRTAP19-2Q3LHN2 52 aa5.64□□□□□ -1.51
NUP88-201ENST00000225696 SEC61BP60468 96 aaKnown RBP5.61□□□□□ -1.51
NUP88-201ENST00000225696 PCLOQ9Y6V0 5065 aa5.55□□□□□ -1.52
NUP88-201ENST00000225696 FLGP20930 4061 aaPredicted RBP5.55□□□□□ -1.52
NUP88-201ENST00000225696 CAMK2N1Q7Z7J9 78 aa5.54□□□□□ -1.52
NUP88-201ENST00000225696 LCE2AQ5TA79 106 aaPredicted RBP5.49□□□□□ -1.53
NUP88-201ENST00000225696 FAT4Q6V0I7 4981 aa5.46□□□□□ -1.54
NUP88-201ENST00000225696 PP632Q6XCG6 107 aa5.43□□□□□ -1.54
NUP88-201ENST00000225696 LCE2CQ5TA81 110 aa5.43□□□□□ -1.54
NUP88-201ENST00000225696 HERC1Q15751 4861 aa5.41□□□□□ -1.54
NUP88-201ENST00000225696 LUZP6Q538Z0 58 aa5.35□□□□□ -1.55
NUP88-201ENST00000225696 TNP1P09430 55 aa5.32□□□□□ -1.56
NUP88-201ENST00000225696 HMCN2Q8NDA2 5059 aa5.3□□□□□ -1.56
NUP88-201ENST00000225696 RNF213Q63HN8 5207 aa5.25□□□□□ -1.57
NUP88-201ENST00000225696 SPRR5A0A1B0GTR4 108 aa5.23□□□□□ -1.57
NUP88-201ENST00000225696 KRTAP23-1A1A580 65 aa5.2□□□□□ -1.58
NUP88-201ENST00000225696 KRTAP19-1Q8IUB9 90 aa5.2□□□□□ -1.58
NUP88-201ENST00000225696 UBR4Q5T4S7 5183 aa5.17□□□□□ -1.58
NUP88-201ENST00000225696 SPRR2GQ9BYE4 73 aa5.16□□□□□ -1.58
NUP88-201ENST00000225696 A0A0A0MQY5 61 aa5.16□□□□□ -1.58
NUP88-201ENST00000225696 LCE3AQ5TA76 89 aa5.12□□□□□ -1.59
NUP88-201ENST00000225696 M0R2T5 61 aa5.06□□□□□ -1.6
NUP88-201ENST00000225696 MT1FP04733 61 aa5.05□□□□□ -1.6
NUP88-201ENST00000225696 MT1HP80294 61 aa5.04□□□□□ -1.6
NUP88-201ENST00000225696 MT2AP02795 61 aa5.01□□□□□ -1.61
NUP88-201ENST00000225696 KRTAP10-10P60014 251 aa5□□□□□ -1.61
NUP88-201ENST00000225696 KRTAP9-8Q9BYQ0 159 aa4.97□□□□□ -1.61
NUP88-201ENST00000225696 KRTAP10-5P60370 271 aa4.92□□□□□ -1.62
NUP88-201ENST00000225696 KRTAP8-1Q8IUC2 63 aa4.92□□□□□ -1.62
NUP88-201ENST00000225696 MT1XP80297 61 aa4.91□□□□□ -1.62
NUP88-201ENST00000225696 MT1BP07438 61 aa4.9□□□□□ -1.62
NUP88-201ENST00000225696 KRTAP19-8Q3LI54 63 aa4.89□□□□□ -1.63
NUP88-201ENST00000225696 LOC100996750A0A140TA64 210 aa4.88□□□□□ -1.63
NUP88-201ENST00000225696 KRTAP4-6Q9BYQ5 205 aa4.88□□□□□ -1.63
NUP88-201ENST00000225696 KRTAP12-3P60328 96 aa4.82□□□□□ -1.64
NUP88-201ENST00000225696 KRTAP10-7P60409 375 aaPredicted RBP4.82□□□□□ -1.64
NUP88-201ENST00000225696 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
NUP88-201ENST00000225696 KMT2DO14686 5537 aa4.78□□□□□ -1.64
NUP88-201ENST00000225696 USH2AO75445 5202 aa4.78□□□□□ -1.64
NUP88-201ENST00000225696 KRTAP9-3Q9BYQ3 159 aa4.74□□□□□ -1.65
NUP88-201ENST00000225696 PRO2289Q9P1D8 64 aa4.7□□□□□ -1.66
NUP88-201ENST00000225696 INE1O15225 51 aa4.62□□□□□ -1.67
NUP88-201ENST00000225696 KRTAP19-5Q3LI72 72 aa4.62□□□□□ -1.67
NUP88-201ENST00000225696 LCE3CQ5T5A8 94 aa4.55□□□□□ -1.68
NUP88-201ENST00000225696 KRTAP4-8A0A0G2JLE6 195 aa4.54□□□□□ -1.68
NUP88-201ENST00000225696 KRTAP4-8Q9BYQ9 185 aa4.54□□□□□ -1.68
NUP88-201ENST00000225696 KRTAP9-6A8MVA2 160 aa4.52□□□□□ -1.69
NUP88-201ENST00000225696 KRTAP4-7Q9BYR0 210 aa4.44□□□□□ -1.7
NUP88-201ENST00000225696 KRTAP9-2Q9BYQ4 174 aa4.43□□□□□ -1.7
NUP88-201ENST00000225696 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.43□□□□□ -1.7
NUP88-201ENST00000225696 KRTAP9-6A0A140TA67 174 aa4.4□□□□□ -1.71
NUP88-201ENST00000225696 KRTAP19-7Q3SYF9 63 aa4.38□□□□□ -1.71
NUP88-201ENST00000225696 KRTAP4-12Q9BQ66 201 aa4.35□□□□□ -1.71
NUP88-201ENST00000225696 LCE3BQ5TA77 95 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 191.6 ms