RNA–Protein interactions for RNA: ENST00000075430.11

CTDP1-201, Transcript of CTD phosphatase subunit 1, humanhuman

TSL 1 (best) BASIC

Gene CTDP1, Length 3,538 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-201ENST00000075430 A0A1B0GVY2 172 aa8.69□□□□□ -1.02
CTDP1-201ENST00000075430 P0C880 135 aa8.68□□□□□ -1.02
CTDP1-201ENST00000075430 KRTAP10-8P60410 259 aa8.66□□□□□ -1.02
CTDP1-201ENST00000075430 KRTAP21-3Q3LHN1 58 aa8.65□□□□□ -1.02
CTDP1-201ENST00000075430 TPRXLQ17RH7 258 aa8.64□□□□□ -1.03
CTDP1-201ENST00000075430 RPS29P62273 56 aaKnown RBP8.63□□□□□ -1.03
CTDP1-201ENST00000075430 KMT2CQ8NEZ4 4911 aaKnown RBP8.63□□□□□ -1.03
CTDP1-201ENST00000075430 APOBP04114 4563 aaKnown RBP8.61□□□□□ -1.03
CTDP1-201ENST00000075430 S4R3F8 94 aa8.6□□□□□ -1.03
CTDP1-201ENST00000075430 KRTAP10-6P60371 365 aaPredicted RBP8.6□□□□□ -1.03
CTDP1-201ENST00000075430 KRTAP10-4P60372 401 aaPredicted RBP8.58□□□□□ -1.04
CTDP1-201ENST00000075430 NDUFAF8A1L188 74 aa8.58□□□□□ -1.04
CTDP1-201ENST00000075430 FAT3Q8TDW7 4589 aa8.56□□□□□ -1.04
CTDP1-201ENST00000075430 KRTAP3-3Q9BYR6 98 aa8.53□□□□□ -1.04
CTDP1-201ENST00000075430 HSPG2P98160 4391 aa8.52□□□□□ -1.05
CTDP1-201ENST00000075430 KRTAP12-2P59991 146 aa8.5□□□□□ -1.05
CTDP1-201ENST00000075430 RYR2Q92736 4967 aa8.47□□□□□ -1.05
CTDP1-201ENST00000075430 KRTAP3-2Q9BYR7 98 aa8.46□□□□□ -1.05
CTDP1-201ENST00000075430 KIAA1109Q2LD37 5005 aa8.46□□□□□ -1.06
CTDP1-201ENST00000075430 XP32Q5T750 250 aa8.42□□□□□ -1.06
CTDP1-201ENST00000075430 RYR3Q15413 4870 aa8.36□□□□□ -1.07
CTDP1-201ENST00000075430 LPAP08519 4548 aa8.35□□□□□ -1.07
CTDP1-201ENST00000075430 LRP2P98164 4655 aa8.31□□□□□ -1.08
CTDP1-201ENST00000075430 RYR1P21817 5038 aa8.31□□□□□ -1.08
CTDP1-201ENST00000075430 KRTAP17-1Q9BYP8 105 aa8.3□□□□□ -1.08
CTDP1-201ENST00000075430 PKHD1L1Q86WI1 4243 aa8.3□□□□□ -1.08
CTDP1-201ENST00000075430 KRTAP12-1P59990 96 aa8.29□□□□□ -1.08
CTDP1-201ENST00000075430 M0QZ58 72 aa8.28□□□□□ -1.08
CTDP1-201ENST00000075430 R4GN34 69 aa8.2□□□□□ -1.1
CTDP1-201ENST00000075430 J3QL48 77 aa8.17□□□□□ -1.1
CTDP1-201ENST00000075430 MT1HL1P0DM35 61 aa8.17□□□□□ -1.1
CTDP1-201ENST00000075430 KRTAP15-1Q3LI76 137 aa8.16□□□□□ -1.1
CTDP1-201ENST00000075430 KRTAP4-5Q9BYR2 181 aa8.13□□□□□ -1.11
CTDP1-201ENST00000075430 TNXBP22105 4242 aa8.1□□□□□ -1.11
CTDP1-201ENST00000075430 EPPK1P58107 5090 aaKnown RBP8.05□□□□□ -1.12
CTDP1-201ENST00000075430 LORP23490 312 aaPredicted RBP8.01□□□□□ -1.13
CTDP1-201ENST00000075430 CAMK2N1Q7Z7J9 78 aa7.96□□□□□ -1.14
CTDP1-201ENST00000075430 ABCA13Q86UQ4 5058 aa7.93□□□□□ -1.14
CTDP1-201ENST00000075430 PLAC4Q8WY50 150 aa7.91□□□□□ -1.14
CTDP1-201ENST00000075430 SEC61BP60468 96 aaKnown RBP7.89□□□□□ -1.15
CTDP1-201ENST00000075430 MUC2Q02817 5179 aa7.86□□□□□ -1.15
CTDP1-201ENST00000075430 LUZP6Q538Z0 58 aa7.77□□□□□ -1.17
CTDP1-201ENST00000075430 HERC2O95714 4834 aa7.75□□□□□ -1.17
CTDP1-201ENST00000075430 A0A0A0MQY5 61 aa7.74□□□□□ -1.17
CTDP1-201ENST00000075430 KRTAP4-1Q9BYQ7 146 aa7.7□□□□□ -1.18
CTDP1-201ENST00000075430 M0R2T5 61 aa7.53□□□□□ -1.2
CTDP1-201ENST00000075430 HERC1Q15751 4861 aa7.46□□□□□ -1.21
CTDP1-201ENST00000075430 FAT4Q6V0I7 4981 aa7.43□□□□□ -1.22
CTDP1-201ENST00000075430 TNP1P09430 55 aa7.41□□□□□ -1.22
CTDP1-201ENST00000075430 MUC17Q685J3 4493 aa7.36□□□□□ -1.23
CTDP1-201ENST00000075430 PP632Q6XCG6 107 aa7.35□□□□□ -1.23
CTDP1-201ENST00000075430 RNF213Q63HN8 5207 aa7.29□□□□□ -1.24
CTDP1-201ENST00000075430 BIRC6Q9NR09 4857 aa7.26□□□□□ -1.25
CTDP1-201ENST00000075430 PCLOQ9Y6V0 5065 aa7.23□□□□□ -1.25
CTDP1-201ENST00000075430 KRTAP19-2Q3LHN2 52 aa7.17□□□□□ -1.26
CTDP1-201ENST00000075430 KRTAP10-10P60014 251 aa7.13□□□□□ -1.27
CTDP1-201ENST00000075430 UBR4Q5T4S7 5183 aa7.1□□□□□ -1.27
CTDP1-201ENST00000075430 FLGP20930 4061 aaPredicted RBP7.08□□□□□ -1.28
CTDP1-201ENST00000075430 HMCN2Q8NDA2 5059 aa7.05□□□□□ -1.28
CTDP1-201ENST00000075430 LCE3AQ5TA76 89 aa7.03□□□□□ -1.28
CTDP1-201ENST00000075430 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
CTDP1-201ENST00000075430 MT1HP80294 61 aa6.87□□□□□ -1.31
CTDP1-201ENST00000075430 KRTAP19-1Q8IUB9 90 aa6.85□□□□□ -1.31
CTDP1-201ENST00000075430 MT1FP04733 61 aa6.81□□□□□ -1.32
CTDP1-201ENST00000075430 MT2AP02795 61 aa6.78□□□□□ -1.32
CTDP1-201ENST00000075430 SPRR5A0A1B0GTR4 108 aa6.77□□□□□ -1.33
CTDP1-201ENST00000075430 SPRR2GQ9BYE4 73 aa6.72□□□□□ -1.33
CTDP1-201ENST00000075430 KMT2DO14686 5537 aa6.66□□□□□ -1.34
CTDP1-201ENST00000075430 KRTAP23-1A1A580 65 aa6.66□□□□□ -1.34
CTDP1-201ENST00000075430 USH2AO75445 5202 aa6.65□□□□□ -1.34
CTDP1-201ENST00000075430 KRTAP12-3P60328 96 aa6.62□□□□□ -1.35
CTDP1-201ENST00000075430 KRTAP9-8Q9BYQ0 159 aa6.62□□□□□ -1.35
CTDP1-201ENST00000075430 KRTAP10-12P60413 245 aa6.58□□□□□ -1.36
CTDP1-201ENST00000075430 FSIP2Q5CZC0 6907 aa6.58□□□□□ -1.36
CTDP1-201ENST00000075430 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
CTDP1-201ENST00000075430 PRO2289Q9P1D8 64 aa6.5□□□□□ -1.37
CTDP1-201ENST00000075430 KRTAP8-1Q8IUC2 63 aa6.49□□□□□ -1.37
CTDP1-201ENST00000075430 KRTAP10-5P60370 271 aa6.48□□□□□ -1.37
CTDP1-201ENST00000075430 MT1XP80297 61 aa6.48□□□□□ -1.37
CTDP1-201ENST00000075430 MT1BP07438 61 aa6.46□□□□□ -1.38
CTDP1-201ENST00000075430 KRTAP19-8Q3LI54 63 aa6.37□□□□□ -1.39
CTDP1-201ENST00000075430 KRTAP9-3Q9BYQ3 159 aa6.32□□□□□ -1.4
CTDP1-201ENST00000075430 INE1O15225 51 aa6.3□□□□□ -1.4
CTDP1-201ENST00000075430 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
CTDP1-201ENST00000075430 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
CTDP1-201ENST00000075430 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
CTDP1-201ENST00000075430 KRTAP4-7Q9BYR0 210 aa6.21□□□□□ -1.42
CTDP1-201ENST00000075430 LCE2BO14633 110 aa6.2□□□□□ -1.42
CTDP1-201ENST00000075430 LCE3CQ5T5A8 94 aa6.12□□□□□ -1.43
CTDP1-201ENST00000075430 KRTAP9-6A8MVA2 160 aa6.05□□□□□ -1.44
CTDP1-201ENST00000075430 DSTQ03001 7570 aaKnown RBP6.03□□□□□ -1.44
CTDP1-201ENST00000075430 CRCT1Q9UGL9 99 aa5.98□□□□□ -1.45
CTDP1-201ENST00000075430 OBSCNQ5VST9 7968 aa5.95□□□□□ -1.46
CTDP1-201ENST00000075430 FCGBPQ9Y6R7 5405 aaPredicted RBP5.94□□□□□ -1.46
CTDP1-201ENST00000075430 SYNE1Q8NF91 8797 aaKnown RBP5.91□□□□□ -1.46
CTDP1-201ENST00000075430 LCE2AQ5TA79 106 aaPredicted RBP5.89□□□□□ -1.47
CTDP1-201ENST00000075430 MUC12Q9UKN1 5478 aa5.78□□□□□ -1.48
CTDP1-201ENST00000075430 SSPOA2VEC9 5147 aa5.76□□□□□ -1.49
CTDP1-201ENST00000075430 LOC100996750A0A140TA64 210 aa5.75□□□□□ -1.49
CTDP1-201ENST00000075430 KRTAP19-7Q3SYF9 63 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms