RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 Q8N9P0 234 aaPredicted RBP3.41□□□□□ -1.86
SCN3A-210ENST00000640652 IGLV7-43P04211 117 aa3.41□□□□□ -1.86
SCN3A-210ENST00000640652 C7orf65Q6ZTY9 151 aa3.4□□□□□ -1.86
SCN3A-210ENST00000640652 IGKV2D-30A0A075B6S6 120 aa3.4□□□□□ -1.87
SCN3A-210ENST00000640652 IGKV2-30P06310 120 aa3.4□□□□□ -1.87
SCN3A-210ENST00000640652 Q5VV11 94 aa3.4□□□□□ -1.87
SCN3A-210ENST00000640652 PLAC8Q9NZF1 115 aa3.39□□□□□ -1.87
SCN3A-210ENST00000640652 DNAH7Q8WXX0 4024 aa3.39□□□□□ -1.87
SCN3A-210ENST00000640652 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.39□□□□□ -1.87
SCN3A-210ENST00000640652 KRTAP7-1Q8IUC3 87 aa3.39□□□□□ -1.87
SCN3A-210ENST00000640652 K7ERS5 55 aa3.39□□□□□ -1.87
SCN3A-210ENST00000640652 WWC2-AS2Q96NR7 200 aa3.38□□□□□ -1.87
SCN3A-210ENST00000640652 ANK3Q12955 4377 aaKnown RBP3.37□□□□□ -1.87
SCN3A-210ENST00000640652 RETNLBQ9BQ08 111 aa3.36□□□□□ -1.87
SCN3A-210ENST00000640652 UQCR11O14957 56 aa3.36□□□□□ -1.87
SCN3A-210ENST00000640652 KRTAP13-1Q8IUC0 172 aa3.35□□□□□ -1.87
SCN3A-210ENST00000640652 LINC01558Q9Y6Z2 57 aa3.35□□□□□ -1.87
SCN3A-210ENST00000640652 SPINK1P00995 79 aa3.35□□□□□ -1.87
SCN3A-210ENST00000640652 ANAPC11Q9NYG5 84 aa3.35□□□□□ -1.87
SCN3A-210ENST00000640652 TYMSOSQ8TAI1 123 aa3.35□□□□□ -1.87
SCN3A-210ENST00000640652 Q6ZRN7 208 aaPredicted RBP3.34□□□□□ -1.88
SCN3A-210ENST00000640652 Q96NJ1 140 aa3.34□□□□□ -1.88
SCN3A-210ENST00000640652 ASB16-AS1Q495Z4 193 aa3.33□□□□□ -1.88
SCN3A-210ENST00000640652 PLA2G1BP04054 148 aaKnown RBP3.33□□□□□ -1.88
SCN3A-210ENST00000640652 HRES1P13985 223 aa3.33□□□□□ -1.88
SCN3A-210ENST00000640652 DMAC1Q96GE9 116 aa3.33□□□□□ -1.88
SCN3A-210ENST00000640652 MIR22HGQ0VDD5 57 aa3.32□□□□□ -1.88
SCN3A-210ENST00000640652 LINC00304Q8N9R0 145 aa3.32□□□□□ -1.88
SCN3A-210ENST00000640652 KRTAP11-1Q8IUC1 163 aa3.31□□□□□ -1.88
SCN3A-210ENST00000640652 Q5W150 140 aa3.3□□□□□ -1.88
SCN3A-210ENST00000640652 PANO1I0J062 215 aa3.3□□□□□ -1.88
SCN3A-210ENST00000640652 KMT2AQ03164 3969 aa3.29□□□□□ -1.88
SCN3A-210ENST00000640652 PRR26Q8N8Z3 221 aa3.28□□□□□ -1.88
SCN3A-210ENST00000640652 LCA10Q71F78 164 aa3.28□□□□□ -1.89
SCN3A-210ENST00000640652 RBM12B-AS1Q9P1G2 102 aa3.26□□□□□ -1.89
SCN3A-210ENST00000640652 FRAS1Q86XX4 4008 aa3.25□□□□□ -1.89
SCN3A-210ENST00000640652 SPINK7P58062 85 aa3.25□□□□□ -1.89
SCN3A-210ENST00000640652 ALMS1Q8TCU4 4167 aa3.24□□□□□ -1.89
SCN3A-210ENST00000640652 RPS29P62273 56 aaKnown RBP3.24□□□□□ -1.89
SCN3A-210ENST00000640652 A6NN06 94 aa3.23□□□□□ -1.89
SCN3A-210ENST00000640652 A0A087X002 238 aa3.22□□□□□ -1.89
SCN3A-210ENST00000640652 NOTCH2NLQ7Z3S9 236 aa3.22□□□□□ -1.89
SCN3A-210ENST00000640652 Q8N1X5 172 aa3.21□□□□□ -1.89
SCN3A-210ENST00000640652 SPATA8Q6RVD6 105 aa3.2□□□□□ -1.9
SCN3A-210ENST00000640652 KRTAP10-2P60368 255 aa3.19□□□□□ -1.9
SCN3A-210ENST00000640652 C9orf92A6NGG3 77 aa3.19□□□□□ -1.9
SCN3A-210ENST00000640652 PRKDCP78527 4128 aaKnown RBP3.19□□□□□ -1.9
SCN3A-210ENST00000640652 A0A1B0GU33 70 aa3.18□□□□□ -1.9
SCN3A-210ENST00000640652 KRTAP10-1P60331 282 aa3.17□□□□□ -1.9
SCN3A-210ENST00000640652 KRTAP13-2Q52LG2 175 aa3.17□□□□□ -1.9
SCN3A-210ENST00000640652 Q6ZSA8 131 aa3.17□□□□□ -1.9
SCN3A-210ENST00000640652 LINC01554Q52M75 96 aa3.16□□□□□ -1.9
SCN3A-210ENST00000640652 VPS13BQ7Z7G8 4022 aa3.16□□□□□ -1.9
SCN3A-210ENST00000640652 A8MU10 97 aa3.15□□□□□ -1.91
SCN3A-210ENST00000640652 KRTAP13-3Q3SY46 172 aa3.15□□□□□ -1.91
SCN3A-210ENST00000640652 DNAH6Q9C0G6 4158 aa3.14□□□□□ -1.91
SCN3A-210ENST00000640652 HUWE1Q7Z6Z7 4374 aaKnown RBP3.13□□□□□ -1.91
SCN3A-210ENST00000640652 SMR3BP02814 79 aaPredicted RBP3.12□□□□□ -1.91
SCN3A-210ENST00000640652 PRAC1Q96KF2 57 aa3.11□□□□□ -1.91
SCN3A-210ENST00000640652 CSAG1Q6PB30 78 aa3.1□□□□□ -1.91
SCN3A-210ENST00000640652 KRTAP1-4P0C5Y4 121 aa3.1□□□□□ -1.91
SCN3A-210ENST00000640652 DYNC2H1Q8NCM8 4307 aaKnown RBP3.1□□□□□ -1.91
SCN3A-210ENST00000640652 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
SCN3A-210ENST00000640652 A8MUU9 505 aa3.1□□□□□ -1.91
SCN3A-210ENST00000640652 KRTAP16-1A8MUX0 517 aa3.09□□□□□ -1.91
SCN3A-210ENST00000640652 C20orf166-AS1Q96NR2 134 aa3.09□□□□□ -1.92
SCN3A-210ENST00000640652 CRIPTQ9P021 101 aa3.08□□□□□ -1.92
SCN3A-210ENST00000640652 DNAH10Q8IVF4 4471 aa3.08□□□□□ -1.92
SCN3A-210ENST00000640652 S4R3F8 94 aa3.08□□□□□ -1.92
SCN3A-210ENST00000640652 COX6B2Q6YFQ2 88 aa3.06□□□□□ -1.92
SCN3A-210ENST00000640652 SPINT4Q6UDR6 99 aa3.05□□□□□ -1.92
SCN3A-210ENST00000640652 A0A0D9SG42 100 aa3.04□□□□□ -1.92
SCN3A-210ENST00000640652 ROMO1P60602 79 aa3.04□□□□□ -1.92
SCN3A-210ENST00000640652 RPL37P61927 97 aaKnown RBP3.04□□□□□ -1.92
SCN3A-210ENST00000640652 KRTAP21-3Q3LHN1 58 aa3.03□□□□□ -1.92
SCN3A-210ENST00000640652 DNAH1Q9P2D7 4330 aa3.02□□□□□ -1.93
SCN3A-210ENST00000640652 Q5VSD8 79 aa3.01□□□□□ -1.93
SCN3A-210ENST00000640652 KRTAP25-1Q3LHN0 102 aa3.01□□□□□ -1.93
SCN3A-210ENST00000640652 STARD9Q9P2P6 4700 aa3.01□□□□□ -1.93
SCN3A-210ENST00000640652 H0YAA0 97 aa3.01□□□□□ -1.93
SCN3A-210ENST00000640652 ADM2Q7Z4H4 148 aa3□□□□□ -1.93
SCN3A-210ENST00000640652 DNAH2Q9P225 4427 aa2.99□□□□□ -1.93
SCN3A-210ENST00000640652 DNAH9Q9NYC9 4486 aa2.98□□□□□ -1.93
SCN3A-210ENST00000640652 PKHD1P08F94 4074 aa2.97□□□□□ -1.93
SCN3A-210ENST00000640652 M0QZ58 72 aa2.96□□□□□ -1.94
SCN3A-210ENST00000640652 H3BS24 57 aa2.96□□□□□ -1.94
SCN3A-210ENST00000640652 PLECQ15149 4684 aaKnown RBP2.93□□□□□ -1.94
SCN3A-210ENST00000640652 R4GN34 69 aa2.92□□□□□ -1.94
SCN3A-210ENST00000640652 SEC61BP60468 96 aaKnown RBP2.92□□□□□ -1.94
SCN3A-210ENST00000640652 VPS13DQ5THJ4 4388 aa2.91□□□□□ -1.94
SCN3A-210ENST00000640652 XP32Q5T750 250 aa2.91□□□□□ -1.94
SCN3A-210ENST00000640652 J3QL48 77 aa2.91□□□□□ -1.94
SCN3A-210ENST00000640652 A0A1B0GVY2 172 aa2.9□□□□□ -1.95
SCN3A-210ENST00000640652 PKD1P98161 4303 aa2.89□□□□□ -1.95
SCN3A-210ENST00000640652 TPRXLQ17RH7 258 aa2.87□□□□□ -1.95
SCN3A-210ENST00000640652 LUZP6Q538Z0 58 aa2.85□□□□□ -1.95
SCN3A-210ENST00000640652 KRTAP3-1Q9BYR8 98 aa2.85□□□□□ -1.95
SCN3A-210ENST00000640652 CAMK2N1Q7Z7J9 78 aa2.84□□□□□ -1.95
SCN3A-210ENST00000640652 KRTAP10-8P60410 259 aa2.81□□□□□ -1.96
SCN3A-210ENST00000640652 FAT2Q9NYQ8 4349 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms