RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 EEA1Q15075 1411 aa0.64□□□□□ -2.31
CD44-239ENST00000639002 A0A0D9SG42 100 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 NDUFA4O00483 81 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 C3orf79P0CE67 100 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 COX6B1P14854 86 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 PREX2Q70Z35 1606 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 ABCA10Q8WWZ4 1543 aa0.63□□□□□ -2.31
CD44-239ENST00000639002 CROCC2H7BZ55 1655 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 TNRC6CQ9HCJ0 1690 aaKnown RBP0.62□□□□□ -2.31
CD44-239ENST00000639002 LCE6AA0A183 80 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 I3L2K1 104 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 LELP1Q5T871 98 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 FAM103A1Q9BTL3 118 aaKnown RBP0.62□□□□□ -2.31
CD44-239ENST00000639002 KIF21BO75037 1637 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 CHD7Q9P2D1 2997 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 PLXNC1O60486 1568 aa0.62□□□□□ -2.31
CD44-239ENST00000639002 ABCA6Q8N139 1617 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 ZNF469Q96JG9 3925 aaPredicted RBP0.61□□□□□ -2.31
CD44-239ENST00000639002 TACC2O95359 2948 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 K7EQZ3 153 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 ENHOQ6UWT2 76 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 MYCBP2O75592 4640 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 ALS2Q96Q42 1657 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 KMT2AQ03164 3969 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 TJP1Q07157 1748 aa0.61□□□□□ -2.31
CD44-239ENST00000639002 ROS1P08922 2347 aa0.6□□□□□ -2.31
CD44-239ENST00000639002 LINC01549A6NIU2 74 aa0.6□□□□□ -2.31
CD44-239ENST00000639002 SERF2P84101 59 aa0.6□□□□□ -2.31
CD44-239ENST00000639002 COX6B2Q6YFQ2 88 aa0.6□□□□□ -2.31
CD44-239ENST00000639002 MRPL34Q9BQ48 92 aaKnown RBP0.6□□□□□ -2.31
CD44-239ENST00000639002 PRXQ9BXM0 1461 aa0.6□□□□□ -2.31
CD44-239ENST00000639002 C3P01024 1663 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 LAMA5O15230 3695 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 LY75O60449 1722 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 MAST1Q9Y2H9 1570 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 KNTC1P50748 2209 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 ASXL3Q9C0F0 2248 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 SPINK4O60575 86 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 Q5VSD8 79 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 FXYD6Q9H0Q3 95 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 CDKN2A-AS1Q9UH64 79 aa0.59□□□□□ -2.31
CD44-239ENST00000639002 DEFB131BA0A096LNP1 70 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 K7EMI3 77 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 FCER1GP30273 86 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 DEFB114Q30KQ6 69 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 NMES1Q9C002 83 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 MROH2AA6NES4 1674 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 KIF1AQ12756 1690 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 URB1O60287 2271 aaKnown RBP0.58□□□□□ -2.32
CD44-239ENST00000639002 ABCC6O95255 1503 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 CPS1P31327 1500 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 SYCP2Q9BX26 1530 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 C4AP0C0L4 1744 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 C4BP0C0L5 1744 aa0.58□□□□□ -2.32
CD44-239ENST00000639002 SPTBN1Q01082 2364 aaKnown RBP0.57□□□□□ -2.32
CD44-239ENST00000639002 AHCTF1Q8WYP5 2266 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 ETDCA0A1B0GVM5 59 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 PHGR1C9JFL3 82 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 NCBP2-AS2Q69YL0 99 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 DEFB105AQ8NG35 78 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 KCNQ1DNQ9H478 68 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 APLNQ9ULZ1 77 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 KIAA0586Q9BVV6 1533 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 LRP1BQ9NZR2 4599 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 ANKRD36CQ5JPF3 1778 aa0.57□□□□□ -2.32
CD44-239ENST00000639002 RNF17Q9BXT8 1623 aaKnown RBP0.56□□□□□ -2.32
CD44-239ENST00000639002 SPRR1AP35321 89 aa0.56□□□□□ -2.32
CD44-239ENST00000639002 PRKDCP78527 4128 aaKnown RBP0.56□□□□□ -2.32
CD44-239ENST00000639002 ITSN2Q9NZM3 1697 aa0.56□□□□□ -2.32
CD44-239ENST00000639002 UGGT1Q9NYU2 1555 aa0.55□□□□□ -2.32
CD44-239ENST00000639002 SPRR1BP22528 89 aa0.55□□□□□ -2.32
CD44-239ENST00000639002 SPINK6Q6UWN8 80 aa0.55□□□□□ -2.32
CD44-239ENST00000639002 GLI2P10070 1586 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 DEPDC5O75140 1603 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 ADCY10Q96PN6 1610 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 NDUFA3O95167 84 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 LINC00158P58513 81 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 DEFB109BQ30KR1 87 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 H1FX-AS1Q4G0G2 97 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 SACSQ9NZJ4 4579 aa0.54□□□□□ -2.32
CD44-239ENST00000639002 LRP1Q07954 4544 aaKnown RBP0.53□□□□□ -2.32
CD44-239ENST00000639002 FRAS1Q86XX4 4008 aa0.53□□□□□ -2.32
CD44-239ENST00000639002 ACACAQ13085 2346 aa0.53□□□□□ -2.32
CD44-239ENST00000639002 PKHD1P08F94 4074 aa0.53□□□□□ -2.32
CD44-239ENST00000639002 DNAH1Q9P2D7 4330 aa0.53□□□□□ -2.32
CD44-239ENST00000639002 HSPG2P98160 4391 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 GOLGA4Q13439 2230 aaKnown RBP0.52□□□□□ -2.33
CD44-239ENST00000639002 SNRPGP15A8MWD9 76 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 M0R1W7 72 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 SPINK1P00995 79 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 WFDC13Q8IUB5 93 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 FANCD2Q9BXW9 1451 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 TOGARAM1Q9Y4F4 1720 aa0.52□□□□□ -2.33
CD44-239ENST00000639002 TNCP24821 2201 aa0.51□□□□□ -2.33
CD44-239ENST00000639002 KLK9Q2XQG4 91 aa0.51□□□□□ -2.33
CD44-239ENST00000639002 ABCA5Q8WWZ7 1642 aa0.51□□□□□ -2.33
CD44-239ENST00000639002 DYNC1H1Q14204 4646 aaKnown RBP0.51□□□□□ -2.33
CD44-239ENST00000639002 PLCE1Q9P212 2302 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 A0A1B0GUL6 1792 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 NRXN3Q9Y4C0 1643 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms