RNA–Protein interactions for RNA: ENST00000638473.1

SCN3A-208, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-208ENST00000638473 KRTAP4-16G5E9R7 235 aaPredicted RBP2.61□□□□□ -1.99
SCN3A-208ENST00000638473 Q8N1X5 172 aa2.6□□□□□ -1.99
SCN3A-208ENST00000638473 CSMD2Q7Z408 3487 aa2.6□□□□□ -1.99
SCN3A-208ENST00000638473 CDC42SE1Q9NRR8 79 aa2.6□□□□□ -1.99
SCN3A-208ENST00000638473 KRTAP7-1Q8IUC3 87 aa2.59□□□□□ -1.99
SCN3A-208ENST00000638473 MMP24-AS1A0A0U1RRL7 71 aa2.59□□□□□ -1.99
SCN3A-208ENST00000638473 DMAC1Q96GE9 116 aa2.59□□□□□ -1.99
SCN3A-208ENST00000638473 LINC00472Q9H8W2 130 aa2.58□□□□□ -2
SCN3A-208ENST00000638473 CRIPTQ9P021 101 aa2.58□□□□□ -2
SCN3A-208ENST00000638473 UQCR11O14957 56 aa2.58□□□□□ -2
SCN3A-208ENST00000638473 CRYBG3Q68DQ2 2970 aa2.58□□□□□ -2
SCN3A-208ENST00000638473 ZCCHC13Q8WW36 166 aaKnown RBP2.58□□□□□ -2
SCN3A-208ENST00000638473 H7BZZ5 65 aa2.57□□□□□ -2
SCN3A-208ENST00000638473 FBN2P35556 2912 aa2.57□□□□□ -2
SCN3A-208ENST00000638473 OXTP01178 125 aa2.55□□□□□ -2
SCN3A-208ENST00000638473 CELSR2Q9HCU4 2923 aa2.55□□□□□ -2
SCN3A-208ENST00000638473 HRES1P13985 223 aa2.55□□□□□ -2
SCN3A-208ENST00000638473 Q1T7F1 81 aa2.55□□□□□ -2
SCN3A-208ENST00000638473 Q5W150 140 aa2.54□□□□□ -2
SCN3A-208ENST00000638473 Q75L30 129 aa2.54□□□□□ -2
SCN3A-208ENST00000638473 S4R3F8 94 aa2.54□□□□□ -2
SCN3A-208ENST00000638473 CUBNO60494 3623 aa2.54□□□□□ -2
SCN3A-208ENST00000638473 M0R2T5 61 aa2.54□□□□□ -2
SCN3A-208ENST00000638473 FP248Q71RG6 208 aaPredicted RBP2.53□□□□□ -2
SCN3A-208ENST00000638473 KRTAP13-1Q8IUC0 172 aa2.53□□□□□ -2
SCN3A-208ENST00000638473 ZNF469Q96JG9 3925 aaPredicted RBP2.53□□□□□ -2
SCN3A-208ENST00000638473 Q8N9P0 234 aaPredicted RBP2.53□□□□□ -2.01
SCN3A-208ENST00000638473 DCHS2Q6V1P9 2916 aa2.52□□□□□ -2.01
SCN3A-208ENST00000638473 MIR22HGQ0VDD5 57 aa2.52□□□□□ -2.01
SCN3A-208ENST00000638473 PDZD2O15018 2839 aa2.52□□□□□ -2.01
SCN3A-208ENST00000638473 SPINK7P58062 85 aa2.52□□□□□ -2.01
SCN3A-208ENST00000638473 KRTAP13-2Q52LG2 175 aa2.52□□□□□ -2.01
SCN3A-208ENST00000638473 HUWE1Q7Z6Z7 4374 aaKnown RBP2.51□□□□□ -2.01
SCN3A-208ENST00000638473 ASH1LQ9NR48 2969 aaKnown RBP2.51□□□□□ -2.01
SCN3A-208ENST00000638473 RPS29P62273 56 aaKnown RBP2.51□□□□□ -2.01
SCN3A-208ENST00000638473 A0A0D9SG42 100 aa2.5□□□□□ -2.01
SCN3A-208ENST00000638473 NOTCH2NLQ7Z3S9 236 aa2.49□□□□□ -2.01
SCN3A-208ENST00000638473 CELSR1Q9NYQ6 3014 aa2.49□□□□□ -2.01
SCN3A-208ENST00000638473 TGP01266 2768 aa2.49□□□□□ -2.01
SCN3A-208ENST00000638473 CYSTM1Q9H1C7 97 aa2.48□□□□□ -2.01
SCN3A-208ENST00000638473 ZANQ9Y493 2812 aa2.48□□□□□ -2.01
SCN3A-208ENST00000638473 KRTAP29-1A8MX34 341 aaPredicted RBP2.47□□□□□ -2.01
SCN3A-208ENST00000638473 TENM4Q6N022 2769 aa2.47□□□□□ -2.01
SCN3A-208ENST00000638473 MXRA5Q9NR99 2828 aa2.47□□□□□ -2.01
SCN3A-208ENST00000638473 KRTAP23-1A1A580 65 aa2.47□□□□□ -2.01
SCN3A-208ENST00000638473 CSAG1Q6PB30 78 aa2.47□□□□□ -2.01
SCN3A-208ENST00000638473 KRTAP17-1Q9BYP8 105 aa2.46□□□□□ -2.02
SCN3A-208ENST00000638473 CMYA5Q8N3K9 4069 aa2.46□□□□□ -2.02
SCN3A-208ENST00000638473 Q5XG85 94 aa2.45□□□□□ -2.02
SCN3A-208ENST00000638473 A0A1B0GVY2 172 aa2.45□□□□□ -2.02
SCN3A-208ENST00000638473 A0A1B0GU33 70 aa2.44□□□□□ -2.02
SCN3A-208ENST00000638473 ALMS1Q8TCU4 4167 aa2.44□□□□□ -2.02
SCN3A-208ENST00000638473 SRRM2Q9UQ35 2752 aaKnown RBP2.44□□□□□ -2.02
SCN3A-208ENST00000638473 KRTAP1-4P0C5Y4 121 aa2.43□□□□□ -2.02
SCN3A-208ENST00000638473 RPL37P61927 97 aaKnown RBP2.43□□□□□ -2.02
SCN3A-208ENST00000638473 TRRAPQ9Y4A5 3859 aa2.43□□□□□ -2.02
SCN3A-208ENST00000638473 LINC01558Q9Y6Z2 57 aa2.42□□□□□ -2.02
SCN3A-208ENST00000638473 ADM2Q7Z4H4 148 aa2.41□□□□□ -2.02
SCN3A-208ENST00000638473 H1FX-AS1Q4G0G2 97 aa2.41□□□□□ -2.02
SCN3A-208ENST00000638473 R4GN34 69 aa2.4□□□□□ -2.03
SCN3A-208ENST00000638473 OTOGQ6ZRI0 2925 aa2.39□□□□□ -2.03
SCN3A-208ENST00000638473 ANK2Q01484 3957 aa2.39□□□□□ -2.03
SCN3A-208ENST00000638473 FBN1P35555 2871 aaKnown RBP2.38□□□□□ -2.03
SCN3A-208ENST00000638473 DNAH9Q9NYC9 4486 aa2.38□□□□□ -2.03
SCN3A-208ENST00000638473 A8MUU9 505 aa2.38□□□□□ -2.03
SCN3A-208ENST00000638473 Q5VV11 94 aa2.38□□□□□ -2.03
SCN3A-208ENST00000638473 C20orf166-AS1Q96NR2 134 aa2.38□□□□□ -2.03
SCN3A-208ENST00000638473 M0QZ58 72 aa2.38□□□□□ -2.03
SCN3A-208ENST00000638473 XP32Q5T750 250 aa2.37□□□□□ -2.03
SCN3A-208ENST00000638473 TENM2Q9NT68 2774 aa2.36□□□□□ -2.03
SCN3A-208ENST00000638473 SPATA8Q6RVD6 105 aa2.36□□□□□ -2.03
SCN3A-208ENST00000638473 VWFP04275 2813 aa2.35□□□□□ -2.03
SCN3A-208ENST00000638473 DNAH3Q8TD57 4116 aa2.35□□□□□ -2.03
SCN3A-208ENST00000638473 PKD1L1Q8TDX9 2849 aa2.35□□□□□ -2.03
SCN3A-208ENST00000638473 PLAC4Q8WY50 150 aa2.34□□□□□ -2.03
SCN3A-208ENST00000638473 TPRXLQ17RH7 258 aa2.34□□□□□ -2.03
SCN3A-208ENST00000638473 ROMO1P60602 79 aa2.33□□□□□ -2.04
SCN3A-208ENST00000638473 PP632Q6XCG6 107 aa2.33□□□□□ -2.04
SCN3A-208ENST00000638473 KRTAP10-8P60410 259 aa2.33□□□□□ -2.04
SCN3A-208ENST00000638473 KRTAP13-3Q3SY46 172 aa2.32□□□□□ -2.04
SCN3A-208ENST00000638473 KRTAP25-1Q3LHN0 102 aa2.3□□□□□ -2.04
SCN3A-208ENST00000638473 DNAH1Q9P2D7 4330 aa2.28□□□□□ -2.04
SCN3A-208ENST00000638473 A8MU10 97 aa2.28□□□□□ -2.04
SCN3A-208ENST00000638473 DNAH6Q9C0G6 4158 aa2.27□□□□□ -2.05
SCN3A-208ENST00000638473 COL7A1Q02388 2944 aa2.27□□□□□ -2.05
SCN3A-208ENST00000638473 DNAH10Q8IVF4 4471 aa2.25□□□□□ -2.05
SCN3A-208ENST00000638473 DYNC2H1Q8NCM8 4307 aaKnown RBP2.25□□□□□ -2.05
SCN3A-208ENST00000638473 LYSTQ99698 3801 aa2.24□□□□□ -2.05
SCN3A-208ENST00000638473 KMT2AQ03164 3969 aa2.24□□□□□ -2.05
SCN3A-208ENST00000638473 FRAS1Q86XX4 4008 aa2.23□□□□□ -2.05
SCN3A-208ENST00000638473 CSMD3Q7Z407 3707 aa2.23□□□□□ -2.05
SCN3A-208ENST00000638473 VPS13DQ5THJ4 4388 aa2.23□□□□□ -2.05
SCN3A-208ENST00000638473 PLECQ15149 4684 aaKnown RBP2.22□□□□□ -2.05
SCN3A-208ENST00000638473 A6NN06 94 aa2.22□□□□□ -2.05
SCN3A-208ENST00000638473 DNAH7Q8WXX0 4024 aa2.21□□□□□ -2.06
SCN3A-208ENST00000638473 DNAH17Q9UFH2 4485 aa2.21□□□□□ -2.06
SCN3A-208ENST00000638473 KRTAP10-10P60014 251 aa2.21□□□□□ -2.06
SCN3A-208ENST00000638473 KRTAP4-5Q9BYR2 181 aa2.2□□□□□ -2.06
SCN3A-208ENST00000638473 PRKDCP78527 4128 aaKnown RBP2.2□□□□□ -2.06
SCN3A-208ENST00000638473 DNAH2Q9P225 4427 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms