RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SPAG11AQ6PDA7 123 aa10.62□□□□□ -0.71
CLN3-254ENST00000637050 ASB16-AS1Q495Z4 193 aa10.61□□□□□ -0.71
CLN3-254ENST00000637050 DEFB116Q30KQ4 102 aa10.6□□□□□ -0.71
CLN3-254ENST00000637050 NDUFC1O43677 76 aa10.6□□□□□ -0.71
CLN3-254ENST00000637050 KRTAP10-8P60410 259 aa10.6□□□□□ -0.71
CLN3-254ENST00000637050 DSCR10P59022 87 aa10.59□□□□□ -0.71
CLN3-254ENST00000637050 LIMD2Q9BT23 127 aa10.59□□□□□ -0.71
CLN3-254ENST00000637050 KRTAP4-5Q9BYR2 181 aa10.59□□□□□ -0.71
CLN3-254ENST00000637050 RPS29P62273 56 aaKnown RBP10.58□□□□□ -0.72
CLN3-254ENST00000637050 C1orf195Q5TG92 126 aa10.57□□□□□ -0.72
CLN3-254ENST00000637050 TRAV7A0A075B6U4 112 aa10.55□□□□□ -0.72
CLN3-254ENST00000637050 BIRC6Q9NR09 4857 aa10.55□□□□□ -0.72
CLN3-254ENST00000637050 Q8N9L7 120 aa10.54□□□□□ -0.72
CLN3-254ENST00000637050 IGKV4-1P06312 121 aa10.53□□□□□ -0.72
CLN3-254ENST00000637050 A0A087WVE0 104 aa10.52□□□□□ -0.73
CLN3-254ENST00000637050 A8MWP4 228 aa10.51□□□□□ -0.73
CLN3-254ENST00000637050 K7EQZ3 153 aa10.51□□□□□ -0.73
CLN3-254ENST00000637050 KLKP1Q107X0 134 aa10.51□□□□□ -0.73
CLN3-254ENST00000637050 C20orf197Q8N268 126 aa10.51□□□□□ -0.73
CLN3-254ENST00000637050 H7BZZ5 65 aa10.49□□□□□ -0.73
CLN3-254ENST00000637050 MT1HL1P0DM35 61 aa10.48□□□□□ -0.73
CLN3-254ENST00000637050 LRP1Q07954 4544 aaKnown RBP10.48□□□□□ -0.73
CLN3-254ENST00000637050 PRR15Q8IV56 129 aa10.47□□□□□ -0.73
CLN3-254ENST00000637050 FLG2Q5D862 2391 aaPredicted RBP10.46□□□□□ -0.73
CLN3-254ENST00000637050 NDUFB1O75438 58 aa10.45□□□□□ -0.74
CLN3-254ENST00000637050 FAT3Q8TDW7 4589 aa10.43□□□□□ -0.74
CLN3-254ENST00000637050 BRK1Q8WUW1 75 aa10.42□□□□□ -0.74
CLN3-254ENST00000637050 A0A1B0GVX0 72 aa10.41□□□□□ -0.74
CLN3-254ENST00000637050 HERC2O95714 4834 aa10.41□□□□□ -0.74
CLN3-254ENST00000637050 FP248Q71RG6 208 aaPredicted RBP10.4□□□□□ -0.74
CLN3-254ENST00000637050 TNXBP22105 4242 aa10.4□□□□□ -0.75
CLN3-254ENST00000637050 KRTAP29-1A8MX34 341 aaPredicted RBP10.39□□□□□ -0.75
CLN3-254ENST00000637050 IGHV6-1A0A0B4J1U7 121 aa10.38□□□□□ -0.75
CLN3-254ENST00000637050 HCG22E2RYF7 251 aa10.38□□□□□ -0.75
CLN3-254ENST00000637050 MYCBP2O75592 4640 aa10.37□□□□□ -0.75
CLN3-254ENST00000637050 MMP24-AS1A0A0U1RRL7 71 aa10.35□□□□□ -0.75
CLN3-254ENST00000637050 C8orf17Q9NRJ1 99 aa10.34□□□□□ -0.75
CLN3-254ENST00000637050 NOTCH2NLQ7Z3S9 236 aa10.32□□□□□ -0.76
CLN3-254ENST00000637050 WFDC13Q8IUB5 93 aa10.31□□□□□ -0.76
CLN3-254ENST00000637050 RETNLBQ9BQ08 111 aa10.31□□□□□ -0.76
CLN3-254ENST00000637050 C8orf87E5RJ46 101 aa10.31□□□□□ -0.76
CLN3-254ENST00000637050 CASC2Q6XLA1 102 aa10.31□□□□□ -0.76
CLN3-254ENST00000637050 A0A0U1RQV1 116 aa10.28□□□□□ -0.76
CLN3-254ENST00000637050 hDV103S1A0JD37 113 aa10.28□□□□□ -0.76
CLN3-254ENST00000637050 PMAIP1Q13794 54 aa10.28□□□□□ -0.76
CLN3-254ENST00000637050 ABCA13Q86UQ4 5058 aa10.27□□□□□ -0.76
CLN3-254ENST00000637050 LINC00313P59037 77 aa10.27□□□□□ -0.77
CLN3-254ENST00000637050 DMBT1Q9UGM3 2413 aaPredicted RBP10.25□□□□□ -0.77
CLN3-254ENST00000637050 TMEM254Q8TBM7 123 aa10.24□□□□□ -0.77
CLN3-254ENST00000637050 SNURFQ9Y675 71 aa10.23□□□□□ -0.77
CLN3-254ENST00000637050 MRPL34Q9BQ48 92 aaKnown RBP10.22□□□□□ -0.77
CLN3-254ENST00000637050 OCR1Q9BZK8 76 aa10.21□□□□□ -0.78
CLN3-254ENST00000637050 J3QL48 77 aa10.2□□□□□ -0.78
CLN3-254ENST00000637050 KRTAP16-1A8MUX0 517 aa10.19□□□□□ -0.78
CLN3-254ENST00000637050 MPLKIPQ8TAP9 179 aa10.14□□□□□ -0.79
CLN3-254ENST00000637050 IGLV7-46A0A075B6I9 117 aa10.13□□□□□ -0.79
CLN3-254ENST00000637050 Q8N9P0 234 aaPredicted RBP10.13□□□□□ -0.79
CLN3-254ENST00000637050 C9orf92A6NGG3 77 aa10.12□□□□□ -0.79
CLN3-254ENST00000637050 Q1T7F1 81 aa10.12□□□□□ -0.79
CLN3-254ENST00000637050 NDUFS5O43920 106 aa10.1□□□□□ -0.79
CLN3-254ENST00000637050 TP53AIP1Q9HCN2 124 aa10.09□□□□□ -0.79
CLN3-254ENST00000637050 PRR4Q16378 134 aa10.08□□□□□ -0.8
CLN3-254ENST00000637050 KRTAP13-3Q3SY46 172 aa10.06□□□□□ -0.8
CLN3-254ENST00000637050 C20orf166-AS1Q96NR2 134 aa10.03□□□□□ -0.8
CLN3-254ENST00000637050 A8MUU9 505 aa10.01□□□□□ -0.81
CLN3-254ENST00000637050 TRAV22A0A0B4J277 110 aa9.99□□□□□ -0.81
CLN3-254ENST00000637050 PCLOQ9Y6V0 5065 aa9.99□□□□□ -0.81
CLN3-254ENST00000637050 TPRXLQ17RH7 258 aa9.99□□□□□ -0.81
CLN3-254ENST00000637050 Q5W150 140 aa9.98□□□□□ -0.81
CLN3-254ENST00000637050 H0Y9P7 68 aa9.97□□□□□ -0.81
CLN3-254ENST00000637050 MP68P56378 58 aa9.96□□□□□ -0.82
CLN3-254ENST00000637050 Q75L30 129 aa9.96□□□□□ -0.82
CLN3-254ENST00000637050 XP32Q5T750 250 aa9.95□□□□□ -0.82
CLN3-254ENST00000637050 H3BPC8 53 aa9.92□□□□□ -0.82
CLN3-254ENST00000637050 KTN1-AS1Q86SY8 53 aa9.92□□□□□ -0.82
CLN3-254ENST00000637050 CYP4F30PQ9H0H9 118 aa9.92□□□□□ -0.82
CLN3-254ENST00000637050 ZCCHC13Q8WW36 166 aaKnown RBP9.91□□□□□ -0.82
CLN3-254ENST00000637050 LINC00208Q96KT6 92 aa9.9□□□□□ -0.82
CLN3-254ENST00000637050 RPL37P61927 97 aaKnown RBP9.88□□□□□ -0.83
CLN3-254ENST00000637050 C1orf64Q8NEQ6 169 aa9.88□□□□□ -0.83
CLN3-254ENST00000637050 LOC101927531A0A1B0GV80 90 aa9.82□□□□□ -0.84
CLN3-254ENST00000637050 ATP11AUNQ6ZP68 121 aa9.8□□□□□ -0.84
CLN3-254ENST00000637050 PSPHP1O15172 72 aa9.8□□□□□ -0.84
CLN3-254ENST00000637050 IGKV2-30P06310 120 aa9.79□□□□□ -0.84
CLN3-254ENST00000637050 RBM12B-AS1Q9P1G2 102 aa9.77□□□□□ -0.84
CLN3-254ENST00000637050 LPAP08519 4548 aa9.73□□□□□ -0.85
CLN3-254ENST00000637050 IGKV2D-30A0A075B6S6 120 aa9.73□□□□□ -0.85
CLN3-254ENST00000637050 A8MUN3 132 aa9.71□□□□□ -0.85
CLN3-254ENST00000637050 Q5VV11 94 aa9.71□□□□□ -0.85
CLN3-254ENST00000637050 C7orf65Q6ZTY9 151 aa9.71□□□□□ -0.85
CLN3-254ENST00000637050 CHKB-CPT1BH3BT56 60 aa9.7□□□□□ -0.86
CLN3-254ENST00000637050 PCOTHQ58A44 107 aa9.7□□□□□ -0.86
CLN3-254ENST00000637050 SPANXA2-OT1Q8N9U9 137 aa9.7□□□□□ -0.86
CLN3-254ENST00000637050 HERC1Q15751 4861 aa9.69□□□□□ -0.86
CLN3-254ENST00000637050 SPINK7P58062 85 aa9.67□□□□□ -0.86
CLN3-254ENST00000637050 LRP2P98164 4655 aa9.66□□□□□ -0.86
CLN3-254ENST00000637050 SEC61BP60468 96 aaKnown RBP9.63□□□□□ -0.87
CLN3-254ENST00000637050 A6NN06 94 aa9.61□□□□□ -0.87
CLN3-254ENST00000637050 HRES1P13985 223 aa9.61□□□□□ -0.87
CLN3-254ENST00000637050 LCA10Q71F78 164 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms