RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DSCR10P59022 87 aa9.75□□□□□ -0.85
CLN3-239ENST00000628023 PCOTHQ58A44 107 aa9.74□□□□□ -0.85
CLN3-239ENST00000628023 IGHV6-1A0A0B4J1U7 121 aa9.73□□□□□ -0.85
CLN3-239ENST00000628023 F8W1H4 67 aa9.73□□□□□ -0.85
CLN3-239ENST00000628023 NREPQ16612 68 aa9.73□□□□□ -0.85
CLN3-239ENST00000628023 LINC00313P59037 77 aa9.72□□□□□ -0.85
CLN3-239ENST00000628023 A0A1B0GVX0 72 aa9.69□□□□□ -0.86
CLN3-239ENST00000628023 NDUFB1O75438 58 aa9.69□□□□□ -0.86
CLN3-239ENST00000628023 Q75L30 129 aa9.69□□□□□ -0.86
CLN3-239ENST00000628023 C8orf87E5RJ46 101 aa9.66□□□□□ -0.86
CLN3-239ENST00000628023 KRTAP9-6A0A140TA67 174 aa9.65□□□□□ -0.86
CLN3-239ENST00000628023 ETDBQ3ZM63 59 aa9.65□□□□□ -0.86
CLN3-239ENST00000628023 ATP11AUNQ6ZP68 121 aa9.65□□□□□ -0.86
CLN3-239ENST00000628023 A8MWP4 228 aa9.64□□□□□ -0.87
CLN3-239ENST00000628023 NOTCH2NLQ7Z3S9 236 aa9.64□□□□□ -0.87
CLN3-239ENST00000628023 C20orf166-AS1Q96NR2 134 aa9.64□□□□□ -0.87
CLN3-239ENST00000628023 KRTAP4-1Q9BYQ7 146 aa9.64□□□□□ -0.87
CLN3-239ENST00000628023 A8MUU9 505 aa9.62□□□□□ -0.87
CLN3-239ENST00000628023 KRTAP16-1A8MUX0 517 aa9.6□□□□□ -0.87
CLN3-239ENST00000628023 Q6ZVQ6 151 aa9.6□□□□□ -0.87
CLN3-239ENST00000628023 BPY2O14599 106 aa9.59□□□□□ -0.87
CLN3-239ENST00000628023 IGKV3D-7A0A0C4DH55 119 aa9.58□□□□□ -0.88
CLN3-239ENST00000628023 UBL5Q9BZL1 73 aa9.58□□□□□ -0.88
CLN3-239ENST00000628023 A0A1B0GV90 55 aa9.57□□□□□ -0.88
CLN3-239ENST00000628023 PRR15Q8IV56 129 aa9.56□□□□□ -0.88
CLN3-239ENST00000628023 C8orf17Q9NRJ1 99 aa9.56□□□□□ -0.88
CLN3-239ENST00000628023 LINC00846Q9NV44 126 aa9.56□□□□□ -0.88
CLN3-239ENST00000628023 K7EQZ3 153 aa9.53□□□□□ -0.88
CLN3-239ENST00000628023 LCE2DQ5TA82 110 aaPredicted RBP9.5□□□□□ -0.89
CLN3-239ENST00000628023 MMP24-AS1A0A0U1RRL7 71 aa9.47□□□□□ -0.89
CLN3-239ENST00000628023 Q8N9L7 120 aa9.46□□□□□ -0.9
CLN3-239ENST00000628023 LCE2CQ5TA81 110 aa9.44□□□□□ -0.9
CLN3-239ENST00000628023 TMEM254Q8TBM7 123 aa9.44□□□□□ -0.9
CLN3-239ENST00000628023 hDV103S1A0JD37 113 aa9.43□□□□□ -0.9
CLN3-239ENST00000628023 Q8N9P0 234 aaPredicted RBP9.43□□□□□ -0.9
CLN3-239ENST00000628023 MRPL34Q9BQ48 92 aaKnown RBP9.42□□□□□ -0.9
CLN3-239ENST00000628023 ACYP1P07311 99 aa9.41□□□□□ -0.9
CLN3-239ENST00000628023 ZCCHC13Q8WW36 166 aaKnown RBP9.4□□□□□ -0.9
CLN3-239ENST00000628023 FAM240AA0A1B0GVK7 77 aa9.39□□□□□ -0.91
CLN3-239ENST00000628023 NDUFS5O43920 106 aa9.39□□□□□ -0.91
CLN3-239ENST00000628023 WFDC13Q8IUB5 93 aa9.39□□□□□ -0.91
CLN3-239ENST00000628023 KRTAP19-2Q3LHN2 52 aa9.38□□□□□ -0.91
CLN3-239ENST00000628023 CASC2Q6XLA1 102 aa9.38□□□□□ -0.91
CLN3-239ENST00000628023 CXCL6P80162 114 aa9.37□□□□□ -0.91
CLN3-239ENST00000628023 MT1HP80294 61 aa9.37□□□□□ -0.91
CLN3-239ENST00000628023 COX6B2Q6YFQ2 88 aa9.37□□□□□ -0.91
CLN3-239ENST00000628023 CRCT1Q9UGL9 99 aa9.35□□□□□ -0.91
CLN3-239ENST00000628023 HCG22E2RYF7 251 aa9.33□□□□□ -0.92
CLN3-239ENST00000628023 M0R2T5 61 aa9.3□□□□□ -0.92
CLN3-239ENST00000628023 FSIP2Q5CZC0 6907 aa9.3□□□□□ -0.92
CLN3-239ENST00000628023 ATP5EP2Q5VTU8 51 aa9.28□□□□□ -0.92
CLN3-239ENST00000628023 J3QR89 54 aa9.26□□□□□ -0.93
CLN3-239ENST00000628023 SPINK7P58062 85 aa9.25□□□□□ -0.93
CLN3-239ENST00000628023 FAM236DA0A1B0GTK5 79 aa9.23□□□□□ -0.93
CLN3-239ENST00000628023 FAM236CP0DP71 79 aa9.23□□□□□ -0.93
CLN3-239ENST00000628023 LORP23490 312 aaPredicted RBP9.23□□□□□ -0.93
CLN3-239ENST00000628023 KRTAP10-6P60371 365 aaPredicted RBP9.23□□□□□ -0.93
CLN3-239ENST00000628023 RBM12B-AS1Q9P1G2 102 aa9.22□□□□□ -0.93
CLN3-239ENST00000628023 HRES1P13985 223 aa9.2□□□□□ -0.94
CLN3-239ENST00000628023 HIST1H4AP62805 103 aaKnown RBP9.2□□□□□ -0.94
CLN3-239ENST00000628023 LINC00643Q86TS7 51 aa9.2□□□□□ -0.94
CLN3-239ENST00000628023 Q5W150 140 aa9.16□□□□□ -0.94
CLN3-239ENST00000628023 IGKV2D-30A0A075B6S6 120 aa9.15□□□□□ -0.94
CLN3-239ENST00000628023 IGKV2-30P06310 120 aa9.15□□□□□ -0.94
CLN3-239ENST00000628023 MPLKIPQ8TAP9 179 aa9.13□□□□□ -0.95
CLN3-239ENST00000628023 TP53AIP1Q9HCN2 124 aa9.13□□□□□ -0.95
CLN3-239ENST00000628023 C7orf65Q6ZTY9 151 aa9.12□□□□□ -0.95
CLN3-239ENST00000628023 FLGP20930 4061 aaPredicted RBP9.1□□□□□ -0.95
CLN3-239ENST00000628023 A0A087WVE0 104 aa9.07□□□□□ -0.96
CLN3-239ENST00000628023 K7ERU9 68 aa9.04□□□□□ -0.96
CLN3-239ENST00000628023 TRAV22A0A0B4J277 110 aa8.98□□□□□ -0.97
CLN3-239ENST00000628023 UQCRQO14949 82 aa8.96□□□□□ -0.98
CLN3-239ENST00000628023 C4orf26Q17RF5 130 aa8.92□□□□□ -0.98
CLN3-239ENST00000628023 H0Y9P7 68 aa8.9□□□□□ -0.98
CLN3-239ENST00000628023 ATOX1O00244 68 aa8.89□□□□□ -0.99
CLN3-239ENST00000628023 LOC101927531A0A1B0GV80 90 aa8.88□□□□□ -0.99
CLN3-239ENST00000628023 SCGB1A1P11684 91 aa8.88□□□□□ -0.99
CLN3-239ENST00000628023 H1FX-AS1Q4G0G2 97 aa8.88□□□□□ -0.99
CLN3-239ENST00000628023 MT-ATP8P03928 68 aa8.87□□□□□ -0.99
CLN3-239ENST00000628023 CYP4F30PQ9H0H9 118 aa8.86□□□□□ -0.99
CLN3-239ENST00000628023 IMUPQ9GZP8 106 aa8.85□□□□□ -0.99
CLN3-239ENST00000628023 OCR1Q9BZK8 76 aa8.84□□□□□ -0.99
CLN3-239ENST00000628023 KRTAP9-8Q9BYQ0 159 aa8.83□□□□□ -1
CLN3-239ENST00000628023 MP68P56378 58 aa8.82□□□□□ -1
CLN3-239ENST00000628023 C1orf64Q8NEQ6 169 aa8.8□□□□□ -1
CLN3-239ENST00000628023 LINC00208Q96KT6 92 aa8.78□□□□□ -1
CLN3-239ENST00000628023 C5orf47Q569G3 176 aa8.76□□□□□ -1.01
CLN3-239ENST00000628023 FAM236AA0A1B0GUQ0 79 aa8.74□□□□□ -1.01
CLN3-239ENST00000628023 FAM236BA0A1B0GV22 79 aa8.74□□□□□ -1.01
CLN3-239ENST00000628023 KRTAP3-1Q9BYR8 98 aa8.72□□□□□ -1.01
CLN3-239ENST00000628023 S4R3F8 94 aa8.7□□□□□ -1.02
CLN3-239ENST00000628023 H3BPC8 53 aa8.69□□□□□ -1.02
CLN3-239ENST00000628023 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.68□□□□□ -1.02
CLN3-239ENST00000628023 MT2AP02795 61 aa8.68□□□□□ -1.02
CLN3-239ENST00000628023 KRTAP9-7A8MTY7 169 aa8.67□□□□□ -1.02
CLN3-239ENST00000628023 SMIM20Q8N5G0 67 aa8.67□□□□□ -1.02
CLN3-239ENST00000628023 KLKP1Q107X0 134 aa8.65□□□□□ -1.02
CLN3-239ENST00000628023 KRTAP10-10P60014 251 aa8.64□□□□□ -1.03
CLN3-239ENST00000628023 USH2AO75445 5202 aa8.64□□□□□ -1.03
CLN3-239ENST00000628023 TRAV7A0A075B6U4 112 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms