RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 BRK1Q8WUW1 75 aa11.49□□□□□ -0.57
CHRNA4-209ENST00000627000 CD164Q04900 197 aa11.47□□□□□ -0.57
CHRNA4-209ENST00000627000 hDV103S1A0JD37 113 aa11.46□□□□□ -0.57
CHRNA4-209ENST00000627000 ZCCHC13Q8WW36 166 aaKnown RBP11.45□□□□□ -0.58
CHRNA4-209ENST00000627000 SMR3BP02814 79 aaPredicted RBP11.45□□□□□ -0.58
CHRNA4-209ENST00000627000 SPINK6Q6UWN8 80 aa11.44□□□□□ -0.58
CHRNA4-209ENST00000627000 IGHV6-1A0A0B4J1U7 121 aa11.43□□□□□ -0.58
CHRNA4-209ENST00000627000 APOBP04114 4563 aaKnown RBP11.42□□□□□ -0.58
CHRNA4-209ENST00000627000 A0A1B0GVX0 72 aa11.42□□□□□ -0.58
CHRNA4-209ENST00000627000 C8orf17Q9NRJ1 99 aa11.41□□□□□ -0.58
CHRNA4-209ENST00000627000 CDK2AP2O75956 126 aa11.4□□□□□ -0.58
CHRNA4-209ENST00000627000 CYP4F30PQ9H0H9 118 aa11.4□□□□□ -0.58
CHRNA4-209ENST00000627000 PLA2G1BP04054 148 aaKnown RBP11.39□□□□□ -0.59
CHRNA4-209ENST00000627000 Q1T7F1 81 aa11.39□□□□□ -0.59
CHRNA4-209ENST00000627000 NOTCH2NLQ7Z3S9 236 aa11.39□□□□□ -0.59
CHRNA4-209ENST00000627000 MP68P56378 58 aa11.38□□□□□ -0.59
CHRNA4-209ENST00000627000 ASB16-AS1Q495Z4 193 aa11.37□□□□□ -0.59
CHRNA4-209ENST00000627000 C1orf64Q8NEQ6 169 aa11.37□□□□□ -0.59
CHRNA4-209ENST00000627000 FAT1Q14517 4588 aa11.36□□□□□ -0.59
CHRNA4-209ENST00000627000 C1orf195Q5TG92 126 aa11.33□□□□□ -0.6
CHRNA4-209ENST00000627000 V9GYY9 64 aa11.33□□□□□ -0.6
CHRNA4-209ENST00000627000 H3BPC8 53 aa11.32□□□□□ -0.6
CHRNA4-209ENST00000627000 TYMSOSQ8TAI1 123 aa11.31□□□□□ -0.6
CHRNA4-209ENST00000627000 H0Y9P7 68 aa11.3□□□□□ -0.6
CHRNA4-209ENST00000627000 KRTAP10-4P60372 401 aaPredicted RBP11.29□□□□□ -0.6
CHRNA4-209ENST00000627000 PRR26Q8N8Z3 221 aa11.28□□□□□ -0.6
CHRNA4-209ENST00000627000 LINC00208Q96KT6 92 aa11.28□□□□□ -0.6
CHRNA4-209ENST00000627000 TRAV22A0A0B4J277 110 aa11.27□□□□□ -0.61
CHRNA4-209ENST00000627000 MRPL34Q9BQ48 92 aaKnown RBP11.27□□□□□ -0.61
CHRNA4-209ENST00000627000 NDUFS5O43920 106 aa11.25□□□□□ -0.61
CHRNA4-209ENST00000627000 RYR3Q15413 4870 aa11.25□□□□□ -0.61
CHRNA4-209ENST00000627000 SPANXA2-OT1Q8N9U9 137 aa11.24□□□□□ -0.61
CHRNA4-209ENST00000627000 C4orf48Q5BLP8 95 aa11.23□□□□□ -0.61
CHRNA4-209ENST00000627000 LIMD2Q9BT23 127 aa11.22□□□□□ -0.61
CHRNA4-209ENST00000627000 TP53AIP1Q9HCN2 124 aa11.21□□□□□ -0.62
CHRNA4-209ENST00000627000 PRR4Q16378 134 aa11.18□□□□□ -0.62
CHRNA4-209ENST00000627000 SPINK1P00995 79 aa11.17□□□□□ -0.62
CHRNA4-209ENST00000627000 C8orf87E5RJ46 101 aa11.17□□□□□ -0.62
CHRNA4-209ENST00000627000 LINC00304Q8N9R0 145 aa11.16□□□□□ -0.62
CHRNA4-209ENST00000627000 PSPHP1O15172 72 aa11.14□□□□□ -0.63
CHRNA4-209ENST00000627000 LINC00313P59037 77 aa11.14□□□□□ -0.63
CHRNA4-209ENST00000627000 Q5W150 140 aa11.09□□□□□ -0.63
CHRNA4-209ENST00000627000 PKHD1L1Q86WI1 4243 aa11.08□□□□□ -0.64
CHRNA4-209ENST00000627000 A8MUN3 132 aa11.06□□□□□ -0.64
CHRNA4-209ENST00000627000 SPAG11AQ6PDA7 123 aa11.06□□□□□ -0.64
CHRNA4-209ENST00000627000 KRTAP16-1A8MUX0 517 aa11.06□□□□□ -0.64
CHRNA4-209ENST00000627000 HSPG2P98160 4391 aa11.05□□□□□ -0.64
CHRNA4-209ENST00000627000 RPS29P62273 56 aaKnown RBP11.04□□□□□ -0.64
CHRNA4-209ENST00000627000 PMAIP1Q13794 54 aa11.04□□□□□ -0.64
CHRNA4-209ENST00000627000 KRTAP13-3Q3SY46 172 aa11.04□□□□□ -0.64
CHRNA4-209ENST00000627000 PCOTHQ58A44 107 aa11.04□□□□□ -0.64
CHRNA4-209ENST00000627000 Q8N9P0 234 aaPredicted RBP11.03□□□□□ -0.64
CHRNA4-209ENST00000627000 FAM229AH3BQW9 127 aa11.01□□□□□ -0.65
CHRNA4-209ENST00000627000 Q5VV11 94 aa11.01□□□□□ -0.65
CHRNA4-209ENST00000627000 RETNLBQ9BQ08 111 aa10.99□□□□□ -0.65
CHRNA4-209ENST00000627000 RYR1P21817 5038 aa10.99□□□□□ -0.65
CHRNA4-209ENST00000627000 IGLV7-46A0A075B6I9 117 aa10.99□□□□□ -0.65
CHRNA4-209ENST00000627000 Q5VSD8 79 aa10.98□□□□□ -0.65
CHRNA4-209ENST00000627000 CHKB-CPT1BH3BT56 60 aa10.96□□□□□ -0.65
CHRNA4-209ENST00000627000 SEC61GP60059 68 aa10.96□□□□□ -0.66
CHRNA4-209ENST00000627000 PRR15LQ9BU68 103 aa10.96□□□□□ -0.66
CHRNA4-209ENST00000627000 KRTAP17-1Q9BYP8 105 aa10.95□□□□□ -0.66
CHRNA4-209ENST00000627000 COA5Q86WW8 74 aa10.94□□□□□ -0.66
CHRNA4-209ENST00000627000 LRP1Q07954 4544 aaKnown RBP10.93□□□□□ -0.66
CHRNA4-209ENST00000627000 LOC101927531A0A1B0GV80 90 aa10.93□□□□□ -0.66
CHRNA4-209ENST00000627000 Q75L30 129 aa10.92□□□□□ -0.66
CHRNA4-209ENST00000627000 KIAA1109Q2LD37 5005 aa10.88□□□□□ -0.67
CHRNA4-209ENST00000627000 Q8N1X5 172 aa10.86□□□□□ -0.67
CHRNA4-209ENST00000627000 TNXBP22105 4242 aa10.85□□□□□ -0.67
CHRNA4-209ENST00000627000 EPPK1P58107 5090 aaKnown RBP10.84□□□□□ -0.67
CHRNA4-209ENST00000627000 FLG2Q5D862 2391 aaPredicted RBP10.84□□□□□ -0.67
CHRNA4-209ENST00000627000 A6NED7 52 aa10.83□□□□□ -0.68
CHRNA4-209ENST00000627000 C9orf92A6NGG3 77 aa10.83□□□□□ -0.68
CHRNA4-209ENST00000627000 ATP11AUNQ6ZP68 121 aa10.83□□□□□ -0.68
CHRNA4-209ENST00000627000 KRTAP10-8P60410 259 aa10.82□□□□□ -0.68
CHRNA4-209ENST00000627000 IGKV2-30P06310 120 aa10.81□□□□□ -0.68
CHRNA4-209ENST00000627000 LINC01558Q9Y6Z2 57 aa10.81□□□□□ -0.68
CHRNA4-209ENST00000627000 FAT3Q8TDW7 4589 aa10.77□□□□□ -0.68
CHRNA4-209ENST00000627000 CDC42SE1Q9NRR8 79 aa10.77□□□□□ -0.69
CHRNA4-209ENST00000627000 HRES1P13985 223 aa10.75□□□□□ -0.69
CHRNA4-209ENST00000627000 IGKV2D-30A0A075B6S6 120 aa10.75□□□□□ -0.69
CHRNA4-209ENST00000627000 KTN1-AS1Q86SY8 53 aa10.75□□□□□ -0.69
CHRNA4-209ENST00000627000 SPTSSBQ8NFR3 76 aa10.74□□□□□ -0.69
CHRNA4-209ENST00000627000 A8MU10 97 aa10.72□□□□□ -0.69
CHRNA4-209ENST00000627000 LCA10Q71F78 164 aa10.72□□□□□ -0.69
CHRNA4-209ENST00000627000 C20orf166-AS1Q96NR2 134 aa10.69□□□□□ -0.7
CHRNA4-209ENST00000627000 A8MUU9 505 aa10.69□□□□□ -0.7
CHRNA4-209ENST00000627000 MYCBP2O75592 4640 aa10.66□□□□□ -0.7
CHRNA4-209ENST00000627000 DMBT1Q9UGM3 2413 aaPredicted RBP10.63□□□□□ -0.71
CHRNA4-209ENST00000627000 A6NN06 94 aa10.63□□□□□ -0.71
CHRNA4-209ENST00000627000 MT1HL1P0DM35 61 aa10.62□□□□□ -0.71
CHRNA4-209ENST00000627000 DMAC1Q96GE9 116 aa10.61□□□□□ -0.71
CHRNA4-209ENST00000627000 C7orf65Q6ZTY9 151 aa10.59□□□□□ -0.71
CHRNA4-209ENST00000627000 ACYP2P14621 99 aa10.58□□□□□ -0.72
CHRNA4-209ENST00000627000 SPINK7P58062 85 aa10.52□□□□□ -0.73
CHRNA4-209ENST00000627000 KRTAP4-5Q9BYR2 181 aa10.52□□□□□ -0.73
CHRNA4-209ENST00000627000 RBM12B-AS1Q9P1G2 102 aa10.48□□□□□ -0.73
CHRNA4-209ENST00000627000 XP32Q5T750 250 aa10.41□□□□□ -0.74
CHRNA4-209ENST00000627000 RPL37P61927 97 aaKnown RBP10.38□□□□□ -0.75
CHRNA4-209ENST00000627000 A0A1B0GU69 56 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms