RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 IGLV7-43P04211 117 aa6.35□□□□□ -1.39
CUX1-221ENST00000622516 TRAV22A0A0B4J277 110 aa6.34□□□□□ -1.39
CUX1-221ENST00000622516 A8MWP4 228 aa6.34□□□□□ -1.39
CUX1-221ENST00000622516 ZNF706Q9Y5V0 76 aaPredicted RBP6.34□□□□□ -1.39
CUX1-221ENST00000622516 SACSQ9NZJ4 4579 aa6.33□□□□□ -1.4
CUX1-221ENST00000622516 CASC2Q6XLA1 102 aa6.33□□□□□ -1.4
CUX1-221ENST00000622516 C7orf65Q6ZTY9 151 aa6.33□□□□□ -1.4
CUX1-221ENST00000622516 A6NN06 94 aa6.33□□□□□ -1.4
CUX1-221ENST00000622516 Q96NJ1 140 aa6.32□□□□□ -1.4
CUX1-221ENST00000622516 ATP11AUNQ6ZP68 121 aa6.32□□□□□ -1.4
CUX1-221ENST00000622516 C1orf64Q8NEQ6 169 aa6.31□□□□□ -1.4
CUX1-221ENST00000622516 SPTSSBQ8NFR3 76 aa6.31□□□□□ -1.4
CUX1-221ENST00000622516 KRTAP29-1A8MX34 341 aaPredicted RBP6.31□□□□□ -1.4
CUX1-221ENST00000622516 SPINK6Q6UWN8 80 aa6.3□□□□□ -1.4
CUX1-221ENST00000622516 IGHV6-1A0A0B4J1U7 121 aa6.29□□□□□ -1.4
CUX1-221ENST00000622516 PRR4Q16378 134 aa6.29□□□□□ -1.4
CUX1-221ENST00000622516 MMP24-AS1A0A0U1RRL7 71 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 NDUFB1O75438 58 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 A0A087X002 238 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 LCE6AA0A183 80 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 NOTCH2NLQ7Z3S9 236 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 LINC00208Q96KT6 92 aa6.27□□□□□ -1.41
CUX1-221ENST00000622516 Q5VV11 94 aa6.26□□□□□ -1.41
CUX1-221ENST00000622516 KRTAP21-3Q3LHN1 58 aa6.25□□□□□ -1.41
CUX1-221ENST00000622516 Q6ZSA8 131 aa6.25□□□□□ -1.41
CUX1-221ENST00000622516 ZCCHC13Q8WW36 166 aaKnown RBP6.24□□□□□ -1.41
CUX1-221ENST00000622516 LINC00313P59037 77 aa6.24□□□□□ -1.41
CUX1-221ENST00000622516 KMT2CQ8NEZ4 4911 aaKnown RBP6.24□□□□□ -1.41
CUX1-221ENST00000622516 H0Y9P7 68 aa6.23□□□□□ -1.41
CUX1-221ENST00000622516 CHKB-CPT1BH3BT56 60 aa6.23□□□□□ -1.41
CUX1-221ENST00000622516 CDK2AP2O75956 126 aa6.23□□□□□ -1.41
CUX1-221ENST00000622516 MP68P56378 58 aa6.23□□□□□ -1.41
CUX1-221ENST00000622516 LINC01554Q52M75 96 aa6.22□□□□□ -1.41
CUX1-221ENST00000622516 C8orf17Q9NRJ1 99 aa6.22□□□□□ -1.41
CUX1-221ENST00000622516 FAT1Q14517 4588 aa6.22□□□□□ -1.41
CUX1-221ENST00000622516 KRTAP13-2Q52LG2 175 aa6.21□□□□□ -1.41
CUX1-221ENST00000622516 A0A1B0GVX0 72 aa6.21□□□□□ -1.42
CUX1-221ENST00000622516 DYNC1H1Q14204 4646 aaKnown RBP6.21□□□□□ -1.42
CUX1-221ENST00000622516 CYP4F30PQ9H0H9 118 aa6.21□□□□□ -1.42
CUX1-221ENST00000622516 SMR3BP02814 79 aaPredicted RBP6.19□□□□□ -1.42
CUX1-221ENST00000622516 SSBP3-AS1Q7Z2R9 100 aa6.17□□□□□ -1.42
CUX1-221ENST00000622516 KRTAP1-4P0C5Y4 121 aa6.16□□□□□ -1.42
CUX1-221ENST00000622516 ASB16-AS1Q495Z4 193 aa6.15□□□□□ -1.42
CUX1-221ENST00000622516 PLA2G1BP04054 148 aaKnown RBP6.15□□□□□ -1.42
CUX1-221ENST00000622516 PCOTHQ58A44 107 aa6.15□□□□□ -1.42
CUX1-221ENST00000622516 MRPL34Q9BQ48 92 aaKnown RBP6.15□□□□□ -1.43
CUX1-221ENST00000622516 LIMD2Q9BT23 127 aa6.15□□□□□ -1.43
CUX1-221ENST00000622516 PRR15LQ9BU68 103 aa6.14□□□□□ -1.43
CUX1-221ENST00000622516 RYR2Q92736 4967 aa6.13□□□□□ -1.43
CUX1-221ENST00000622516 CDC42SE1Q9NRR8 79 aa6.13□□□□□ -1.43
CUX1-221ENST00000622516 A6NED7 52 aa6.12□□□□□ -1.43
CUX1-221ENST00000622516 Q8N9P0 234 aaPredicted RBP6.12□□□□□ -1.43
CUX1-221ENST00000622516 RETNLBQ9BQ08 111 aa6.11□□□□□ -1.43
CUX1-221ENST00000622516 APOBP04114 4563 aaKnown RBP6.11□□□□□ -1.43
CUX1-221ENST00000622516 Q75L30 129 aa6.1□□□□□ -1.43
CUX1-221ENST00000622516 Q5W150 140 aa6.1□□□□□ -1.43
CUX1-221ENST00000622516 TP53AIP1Q9HCN2 124 aa6.1□□□□□ -1.43
CUX1-221ENST00000622516 PRAC1Q96KF2 57 aa6.09□□□□□ -1.43
CUX1-221ENST00000622516 TYMSOSQ8TAI1 123 aa6.09□□□□□ -1.43
CUX1-221ENST00000622516 H3BPC8 53 aa6.08□□□□□ -1.44
CUX1-221ENST00000622516 A0A1B0GVY2 172 aa6.05□□□□□ -1.44
CUX1-221ENST00000622516 SPANXA2-OT1Q8N9U9 137 aa6.04□□□□□ -1.44
CUX1-221ENST00000622516 LOC101927531A0A1B0GV80 90 aa6.03□□□□□ -1.44
CUX1-221ENST00000622516 RYR3Q15413 4870 aa6.03□□□□□ -1.44
CUX1-221ENST00000622516 IGLV7-46A0A075B6I9 117 aa6□□□□□ -1.45
CUX1-221ENST00000622516 KRTAP13-3Q3SY46 172 aa6□□□□□ -1.45
CUX1-221ENST00000622516 LRP1Q07954 4544 aaKnown RBP6□□□□□ -1.45
CUX1-221ENST00000622516 ADM2Q7Z4H4 148 aa5.99□□□□□ -1.45
CUX1-221ENST00000622516 LINC00304Q8N9R0 145 aa5.99□□□□□ -1.45
CUX1-221ENST00000622516 SPINK1P00995 79 aa5.98□□□□□ -1.45
CUX1-221ENST00000622516 COA5Q86WW8 74 aa5.98□□□□□ -1.45
CUX1-221ENST00000622516 KRTAP16-1A8MUX0 517 aa5.97□□□□□ -1.45
CUX1-221ENST00000622516 KRTAP10-4P60372 401 aaPredicted RBP5.97□□□□□ -1.45
CUX1-221ENST00000622516 FLG2Q5D862 2391 aaPredicted RBP5.96□□□□□ -1.46
CUX1-221ENST00000622516 PKHD1L1Q86WI1 4243 aa5.95□□□□□ -1.46
CUX1-221ENST00000622516 SPAG11AQ6PDA7 123 aa5.93□□□□□ -1.46
CUX1-221ENST00000622516 FAM229AH3BQW9 127 aa5.93□□□□□ -1.46
CUX1-221ENST00000622516 LINC01558Q9Y6Z2 57 aa5.93□□□□□ -1.46
CUX1-221ENST00000622516 IGKV2D-30A0A075B6S6 120 aa5.92□□□□□ -1.46
CUX1-221ENST00000622516 C9orf92A6NGG3 77 aa5.92□□□□□ -1.46
CUX1-221ENST00000622516 IGKV2-30P06310 120 aa5.92□□□□□ -1.46
CUX1-221ENST00000622516 HRES1P13985 223 aa5.92□□□□□ -1.46
CUX1-221ENST00000622516 DMBT1Q9UGM3 2413 aaPredicted RBP5.92□□□□□ -1.46
CUX1-221ENST00000622516 HSPG2P98160 4391 aa5.92□□□□□ -1.46
CUX1-221ENST00000622516 SPINK7P58062 85 aa5.91□□□□□ -1.46
CUX1-221ENST00000622516 KIAA1109Q2LD37 5005 aa5.88□□□□□ -1.47
CUX1-221ENST00000622516 MYCBP2O75592 4640 aa5.87□□□□□ -1.47
CUX1-221ENST00000622516 TNXBP22105 4242 aa5.85□□□□□ -1.47
CUX1-221ENST00000622516 EPPK1P58107 5090 aaKnown RBP5.84□□□□□ -1.47
CUX1-221ENST00000622516 RYR1P21817 5038 aa5.84□□□□□ -1.47
CUX1-221ENST00000622516 KRTAP17-1Q9BYP8 105 aa5.83□□□□□ -1.48
CUX1-221ENST00000622516 RPS29P62273 56 aaKnown RBP5.82□□□□□ -1.48
CUX1-221ENST00000622516 CSAG1Q6PB30 78 aa5.82□□□□□ -1.48
CUX1-221ENST00000622516 Q5VSD8 79 aa5.82□□□□□ -1.48
CUX1-221ENST00000622516 Q8N1X5 172 aa5.82□□□□□ -1.48
CUX1-221ENST00000622516 ACYP2P14621 99 aa5.81□□□□□ -1.48
CUX1-221ENST00000622516 FAT3Q8TDW7 4589 aa5.81□□□□□ -1.48
CUX1-221ENST00000622516 SEC61BP60468 96 aaKnown RBP5.8□□□□□ -1.48
CUX1-221ENST00000622516 DMAC1Q96GE9 116 aa5.8□□□□□ -1.48
CUX1-221ENST00000622516 ROMO1P60602 79 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms