RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MOBPQ13875 183 aa12.75□□□□□ -0.37
LIME1-210ENST00000621325 LINC00472Q9H8W2 130 aa12.75□□□□□ -0.37
LIME1-210ENST00000621325 LCA10Q71F78 164 aa12.74□□□□□ -0.37
LIME1-210ENST00000621325 LRP1BQ9NZR2 4599 aa12.73□□□□□ -0.37
LIME1-210ENST00000621325 A6NN06 94 aa12.73□□□□□ -0.37
LIME1-210ENST00000621325 Q6ZSA8 131 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 SACSQ9NZJ4 4579 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 NDUFS5O43920 106 aa12.72□□□□□ -0.37
LIME1-210ENST00000621325 ATP11AUNQ6ZP68 121 aa12.69□□□□□ -0.38
LIME1-210ENST00000621325 PRR15LQ9BU68 103 aa12.69□□□□□ -0.38
LIME1-210ENST00000621325 C8orf87E5RJ46 101 aa12.68□□□□□ -0.38
LIME1-210ENST00000621325 WFDC13Q8IUB5 93 aa12.68□□□□□ -0.38
LIME1-210ENST00000621325 Q8N9P0 234 aaPredicted RBP12.67□□□□□ -0.38
LIME1-210ENST00000621325 A8MWP4 228 aa12.64□□□□□ -0.39
LIME1-210ENST00000621325 Q96NJ1 140 aa12.64□□□□□ -0.39
LIME1-210ENST00000621325 H3BS24 57 aa12.62□□□□□ -0.39
LIME1-210ENST00000621325 A6NED7 52 aa12.6□□□□□ -0.39
LIME1-210ENST00000621325 C7orf65Q6ZTY9 151 aa12.6□□□□□ -0.39
LIME1-210ENST00000621325 LIMD2Q9BT23 127 aa12.59□□□□□ -0.39
LIME1-210ENST00000621325 PKHD1P08F94 4074 aa12.59□□□□□ -0.39
LIME1-210ENST00000621325 KRTAP29-1A8MX34 341 aaPredicted RBP12.59□□□□□ -0.39
LIME1-210ENST00000621325 CASC2Q6XLA1 102 aa12.55□□□□□ -0.4
LIME1-210ENST00000621325 VPS13BQ7Z7G8 4022 aa12.54□□□□□ -0.4
LIME1-210ENST00000621325 Q75L30 129 aa12.53□□□□□ -0.4
LIME1-210ENST00000621325 LINC00208Q96KT6 92 aa12.52□□□□□ -0.41
LIME1-210ENST00000621325 A0A087X002 238 aa12.51□□□□□ -0.41
LIME1-210ENST00000621325 MMP24-AS1A0A0U1RRL7 71 aa12.5□□□□□ -0.41
LIME1-210ENST00000621325 NDUFB1O75438 58 aa12.5□□□□□ -0.41
LIME1-210ENST00000621325 CDC42SE1Q9NRR8 79 aa12.48□□□□□ -0.41
LIME1-210ENST00000621325 KRTAP13-2Q52LG2 175 aa12.47□□□□□ -0.41
LIME1-210ENST00000621325 SSBP3-AS1Q7Z2R9 100 aa12.45□□□□□ -0.42
LIME1-210ENST00000621325 DYNC1H1Q14204 4646 aaKnown RBP12.43□□□□□ -0.42
LIME1-210ENST00000621325 IGHV6-1A0A0B4J1U7 121 aa12.43□□□□□ -0.42
LIME1-210ENST00000621325 LOC101927531A0A1B0GV80 90 aa12.43□□□□□ -0.42
LIME1-210ENST00000621325 KRTAP1-4P0C5Y4 121 aa12.42□□□□□ -0.42
LIME1-210ENST00000621325 SPINK6Q6UWN8 80 aa12.42□□□□□ -0.42
LIME1-210ENST00000621325 A0A1B0GVX0 72 aa12.41□□□□□ -0.42
LIME1-210ENST00000621325 C8orf17Q9NRJ1 99 aa12.4□□□□□ -0.42
LIME1-210ENST00000621325 NOTCH2NLQ7Z3S9 236 aa12.39□□□□□ -0.43
LIME1-210ENST00000621325 RYR2Q92736 4967 aa12.39□□□□□ -0.43
LIME1-210ENST00000621325 CDK2AP2O75956 126 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 MP68P56378 58 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 PRAC1Q96KF2 57 aa12.38□□□□□ -0.43
LIME1-210ENST00000621325 ASB16-AS1Q495Z4 193 aa12.37□□□□□ -0.43
LIME1-210ENST00000621325 A0A1B0GVY2 172 aa12.36□□□□□ -0.43
LIME1-210ENST00000621325 SPANXA2-OT1Q8N9U9 137 aa12.35□□□□□ -0.43
LIME1-210ENST00000621325 KMT2CQ8NEZ4 4911 aaKnown RBP12.35□□□□□ -0.43
LIME1-210ENST00000621325 LINC00313P59037 77 aa12.33□□□□□ -0.44
LIME1-210ENST00000621325 H0Y9P7 68 aa12.32□□□□□ -0.44
LIME1-210ENST00000621325 SMR3BP02814 79 aaPredicted RBP12.32□□□□□ -0.44
LIME1-210ENST00000621325 COA5Q86WW8 74 aa12.32□□□□□ -0.44
LIME1-210ENST00000621325 PLA2G1BP04054 148 aaKnown RBP12.3□□□□□ -0.44
LIME1-210ENST00000621325 SPINK7P58062 85 aa12.3□□□□□ -0.44
LIME1-210ENST00000621325 APOBP04114 4563 aaKnown RBP12.27□□□□□ -0.44
LIME1-210ENST00000621325 ADM2Q7Z4H4 148 aa12.27□□□□□ -0.44
LIME1-210ENST00000621325 FAT1Q14517 4588 aa12.26□□□□□ -0.45
LIME1-210ENST00000621325 SPAG11AQ6PDA7 123 aa12.26□□□□□ -0.45
LIME1-210ENST00000621325 MRPL34Q9BQ48 92 aaKnown RBP12.25□□□□□ -0.45
LIME1-210ENST00000621325 PRR26Q8N8Z3 221 aa12.23□□□□□ -0.45
LIME1-210ENST00000621325 LINC01554Q52M75 96 aa12.22□□□□□ -0.45
LIME1-210ENST00000621325 TYMSOSQ8TAI1 123 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 TP53AIP1Q9HCN2 124 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 LINC01558Q9Y6Z2 57 aa12.2□□□□□ -0.46
LIME1-210ENST00000621325 H3BPC8 53 aa12.19□□□□□ -0.46
LIME1-210ENST00000621325 KRTAP10-4P60372 401 aaPredicted RBP12.13□□□□□ -0.47
LIME1-210ENST00000621325 IGLV7-46A0A075B6I9 117 aa12.1□□□□□ -0.47
LIME1-210ENST00000621325 Q5W150 140 aa12.08□□□□□ -0.48
LIME1-210ENST00000621325 SPINK1P00995 79 aa12.07□□□□□ -0.48
LIME1-210ENST00000621325 PCOTHQ58A44 107 aa12.06□□□□□ -0.48
LIME1-210ENST00000621325 LINC00304Q8N9R0 145 aa12.04□□□□□ -0.48
LIME1-210ENST00000621325 RYR3Q15413 4870 aa12.01□□□□□ -0.49
LIME1-210ENST00000621325 KRTAP13-3Q3SY46 172 aa12.01□□□□□ -0.49
LIME1-210ENST00000621325 KRTAP16-1A8MUX0 517 aa11.99□□□□□ -0.49
LIME1-210ENST00000621325 PKHD1L1Q86WI1 4243 aa11.96□□□□□ -0.49
LIME1-210ENST00000621325 RETNLBQ9BQ08 111 aa11.95□□□□□ -0.5
LIME1-210ENST00000621325 HRES1P13985 223 aa11.94□□□□□ -0.5
LIME1-210ENST00000621325 RPS29P62273 56 aaKnown RBP11.9□□□□□ -0.5
LIME1-210ENST00000621325 HSPG2P98160 4391 aa11.87□□□□□ -0.51
LIME1-210ENST00000621325 FAM229AH3BQW9 127 aa11.86□□□□□ -0.51
LIME1-210ENST00000621325 CSAG1Q6PB30 78 aa11.81□□□□□ -0.52
LIME1-210ENST00000621325 LRP1Q07954 4544 aaKnown RBP11.79□□□□□ -0.52
LIME1-210ENST00000621325 Q5VSD8 79 aa11.76□□□□□ -0.53
LIME1-210ENST00000621325 RYR1P21817 5038 aa11.76□□□□□ -0.53
LIME1-210ENST00000621325 IGKV2-30P06310 120 aa11.75□□□□□ -0.53
LIME1-210ENST00000621325 KRTAP17-1Q9BYP8 105 aa11.75□□□□□ -0.53
LIME1-210ENST00000621325 C9orf92A6NGG3 77 aa11.72□□□□□ -0.53
LIME1-210ENST00000621325 FLG2Q5D862 2391 aaPredicted RBP11.72□□□□□ -0.53
LIME1-210ENST00000621325 TNXBP22105 4242 aa11.7□□□□□ -0.54
LIME1-210ENST00000621325 Q8N1X5 172 aa11.69□□□□□ -0.54
LIME1-210ENST00000621325 KIAA1109Q2LD37 5005 aa11.69□□□□□ -0.54
LIME1-210ENST00000621325 IGKV2D-30A0A075B6S6 120 aa11.68□□□□□ -0.54
LIME1-210ENST00000621325 SPATA8Q6RVD6 105 aa11.65□□□□□ -0.55
LIME1-210ENST00000621325 KRTAP10-8P60410 259 aa11.62□□□□□ -0.55
LIME1-210ENST00000621325 FAT3Q8TDW7 4589 aa11.59□□□□□ -0.55
LIME1-210ENST00000621325 EPPK1P58107 5090 aaKnown RBP11.59□□□□□ -0.55
LIME1-210ENST00000621325 DMAC1Q96GE9 116 aa11.57□□□□□ -0.56
LIME1-210ENST00000621325 C20orf166-AS1Q96NR2 134 aa11.56□□□□□ -0.56
LIME1-210ENST00000621325 A8MUU9 505 aa11.56□□□□□ -0.56
LIME1-210ENST00000621325 A0A1B0GU69 56 aa11.55□□□□□ -0.56
LIME1-210ENST00000621325 MIR22HGQ0VDD5 57 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms