RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 FAM229BQ4G0N7 80 aa11.79□□□□□ -0.52
MMP28-207ENST00000619655 CDK2AP2O75956 126 aa11.76□□□□□ -0.53
MMP28-207ENST00000619655 IGHV6-1A0A0B4J1U7 121 aa11.76□□□□□ -0.53
MMP28-207ENST00000619655 CD164Q04900 197 aa11.76□□□□□ -0.53
MMP28-207ENST00000619655 KRTAP29-1A8MX34 341 aaPredicted RBP11.75□□□□□ -0.53
MMP28-207ENST00000619655 FAT1Q14517 4588 aa11.74□□□□□ -0.53
MMP28-207ENST00000619655 MMP24-AS1A0A0U1RRL7 71 aa11.74□□□□□ -0.53
MMP28-207ENST00000619655 RYR3Q15413 4870 aa11.72□□□□□ -0.53
MMP28-207ENST00000619655 A0A1B0GVX0 72 aa11.7□□□□□ -0.54
MMP28-207ENST00000619655 hDV103S1A0JD37 113 aa11.7□□□□□ -0.54
MMP28-207ENST00000619655 TYMSOSQ8TAI1 123 aa11.7□□□□□ -0.54
MMP28-207ENST00000619655 MPLKIPQ8TAP9 179 aa11.68□□□□□ -0.54
MMP28-207ENST00000619655 C8orf17Q9NRJ1 99 aa11.68□□□□□ -0.54
MMP28-207ENST00000619655 PRR26Q8N8Z3 221 aa11.65□□□□□ -0.54
MMP28-207ENST00000619655 BRK1Q8WUW1 75 aa11.65□□□□□ -0.54
MMP28-207ENST00000619655 NOTCH2NLQ7Z3S9 236 aa11.65□□□□□ -0.54
MMP28-207ENST00000619655 ZCCHC13Q8WW36 166 aaKnown RBP11.64□□□□□ -0.55
MMP28-207ENST00000619655 C4orf48Q5BLP8 95 aa11.63□□□□□ -0.55
MMP28-207ENST00000619655 KRTAP10-4P60372 401 aaPredicted RBP11.61□□□□□ -0.55
MMP28-207ENST00000619655 ASB16-AS1Q495Z4 193 aa11.6□□□□□ -0.55
MMP28-207ENST00000619655 NDUFS5O43920 106 aa11.59□□□□□ -0.55
MMP28-207ENST00000619655 C1orf195Q5TG92 126 aa11.58□□□□□ -0.56
MMP28-207ENST00000619655 LIMD2Q9BT23 127 aa11.58□□□□□ -0.56
MMP28-207ENST00000619655 MP68P56378 58 aa11.56□□□□□ -0.56
MMP28-207ENST00000619655 H0Y9P7 68 aa11.55□□□□□ -0.56
MMP28-207ENST00000619655 LINC00208Q96KT6 92 aa11.54□□□□□ -0.56
MMP28-207ENST00000619655 MRPL34Q9BQ48 92 aaKnown RBP11.54□□□□□ -0.56
MMP28-207ENST00000619655 C1orf64Q8NEQ6 169 aa11.53□□□□□ -0.56
MMP28-207ENST00000619655 LINC00304Q8N9R0 145 aa11.53□□□□□ -0.56
MMP28-207ENST00000619655 SPINK1P00995 79 aa11.52□□□□□ -0.57
MMP28-207ENST00000619655 Q1T7F1 81 aa11.51□□□□□ -0.57
MMP28-207ENST00000619655 CYP4F30PQ9H0H9 118 aa11.49□□□□□ -0.57
MMP28-207ENST00000619655 TRAV22A0A0B4J277 110 aa11.49□□□□□ -0.57
MMP28-207ENST00000619655 FAM229AH3BQW9 127 aa11.48□□□□□ -0.57
MMP28-207ENST00000619655 TP53AIP1Q9HCN2 124 aa11.47□□□□□ -0.57
MMP28-207ENST00000619655 HSPG2P98160 4391 aa11.46□□□□□ -0.57
MMP28-207ENST00000619655 LINC00313P59037 77 aa11.46□□□□□ -0.57
MMP28-207ENST00000619655 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
MMP28-207ENST00000619655 Q5VSD8 79 aa11.42□□□□□ -0.58
MMP28-207ENST00000619655 H3BPC8 53 aa11.41□□□□□ -0.58
MMP28-207ENST00000619655 SPAG11AQ6PDA7 123 aa11.41□□□□□ -0.58
MMP28-207ENST00000619655 PRR4Q16378 134 aa11.38□□□□□ -0.59
MMP28-207ENST00000619655 PKHD1L1Q86WI1 4243 aa11.38□□□□□ -0.59
MMP28-207ENST00000619655 RPS29P62273 56 aaKnown RBP11.35□□□□□ -0.59
MMP28-207ENST00000619655 V9GYY9 64 aa11.35□□□□□ -0.59
MMP28-207ENST00000619655 RYR1P21817 5038 aa11.35□□□□□ -0.59
MMP28-207ENST00000619655 Q5W150 140 aa11.33□□□□□ -0.6
MMP28-207ENST00000619655 LRP1Q07954 4544 aaKnown RBP11.33□□□□□ -0.6
MMP28-207ENST00000619655 PSPHP1O15172 72 aa11.32□□□□□ -0.6
MMP28-207ENST00000619655 SPANXA2-OT1Q8N9U9 137 aa11.31□□□□□ -0.6
MMP28-207ENST00000619655 RETNLBQ9BQ08 111 aa11.31□□□□□ -0.6
MMP28-207ENST00000619655 EPPK1P58107 5090 aaKnown RBP11.31□□□□□ -0.6
MMP28-207ENST00000619655 PCOTHQ58A44 107 aa11.31□□□□□ -0.6
MMP28-207ENST00000619655 KIAA1109Q2LD37 5005 aa11.3□□□□□ -0.6
MMP28-207ENST00000619655 KRTAP16-1A8MUX0 517 aa11.29□□□□□ -0.6
MMP28-207ENST00000619655 KRTAP17-1Q9BYP8 105 aa11.29□□□□□ -0.6
MMP28-207ENST00000619655 Q8N9P0 234 aaPredicted RBP11.27□□□□□ -0.6
MMP28-207ENST00000619655 A8MUN3 132 aa11.23□□□□□ -0.61
MMP28-207ENST00000619655 KRTAP13-3Q3SY46 172 aa11.23□□□□□ -0.61
MMP28-207ENST00000619655 TNXBP22105 4242 aa11.23□□□□□ -0.61
MMP28-207ENST00000619655 Q8N1X5 172 aa11.21□□□□□ -0.61
MMP28-207ENST00000619655 C9orf92A6NGG3 77 aa11.2□□□□□ -0.62
MMP28-207ENST00000619655 FLG2Q5D862 2391 aaPredicted RBP11.19□□□□□ -0.62
MMP28-207ENST00000619655 Q5VV11 94 aa11.19□□□□□ -0.62
MMP28-207ENST00000619655 PMAIP1Q13794 54 aa11.18□□□□□ -0.62
MMP28-207ENST00000619655 LOC101927531A0A1B0GV80 90 aa11.18□□□□□ -0.62
MMP28-207ENST00000619655 IGLV7-46A0A075B6I9 117 aa11.17□□□□□ -0.62
MMP28-207ENST00000619655 MYCBP2O75592 4640 aa11.15□□□□□ -0.62
MMP28-207ENST00000619655 KRTAP10-8P60410 259 aa11.14□□□□□ -0.63
MMP28-207ENST00000619655 SEC61GP60059 68 aa11.14□□□□□ -0.63
MMP28-207ENST00000619655 FAT3Q8TDW7 4589 aa11.12□□□□□ -0.63
MMP28-207ENST00000619655 CHKB-CPT1BH3BT56 60 aa11.08□□□□□ -0.64
MMP28-207ENST00000619655 PRR15LQ9BU68 103 aa11.08□□□□□ -0.64
MMP28-207ENST00000619655 COA5Q86WW8 74 aa11.06□□□□□ -0.64
MMP28-207ENST00000619655 IGKV2D-30A0A075B6S6 120 aa11.06□□□□□ -0.64
MMP28-207ENST00000619655 IGKV2-30P06310 120 aa11.06□□□□□ -0.64
MMP28-207ENST00000619655 DMBT1Q9UGM3 2413 aaPredicted RBP11.05□□□□□ -0.64
MMP28-207ENST00000619655 Q75L30 129 aa11.03□□□□□ -0.64
MMP28-207ENST00000619655 A8MU10 97 aa11.02□□□□□ -0.64
MMP28-207ENST00000619655 HRES1P13985 223 aa11□□□□□ -0.65
MMP28-207ENST00000619655 C20orf166-AS1Q96NR2 134 aa10.96□□□□□ -0.65
MMP28-207ENST00000619655 MT1HL1P0DM35 61 aa10.96□□□□□ -0.66
MMP28-207ENST00000619655 A8MUU9 505 aa10.95□□□□□ -0.66
MMP28-207ENST00000619655 A6NED7 52 aa10.93□□□□□ -0.66
MMP28-207ENST00000619655 ATP11AUNQ6ZP68 121 aa10.93□□□□□ -0.66
MMP28-207ENST00000619655 KRTAP4-5Q9BYR2 181 aa10.92□□□□□ -0.66
MMP28-207ENST00000619655 LCA10Q71F78 164 aa10.91□□□□□ -0.66
MMP28-207ENST00000619655 LINC01558Q9Y6Z2 57 aa10.9□□□□□ -0.66
MMP28-207ENST00000619655 SPTSSBQ8NFR3 76 aa10.89□□□□□ -0.67
MMP28-207ENST00000619655 C7orf65Q6ZTY9 151 aa10.88□□□□□ -0.67
MMP28-207ENST00000619655 CDC42SE1Q9NRR8 79 aa10.87□□□□□ -0.67
MMP28-207ENST00000619655 KTN1-AS1Q86SY8 53 aa10.87□□□□□ -0.67
MMP28-207ENST00000619655 DMAC1Q96GE9 116 aa10.82□□□□□ -0.68
MMP28-207ENST00000619655 ACYP2P14621 99 aa10.81□□□□□ -0.68
MMP28-207ENST00000619655 A6NN06 94 aa10.79□□□□□ -0.68
MMP28-207ENST00000619655 XP32Q5T750 250 aa10.74□□□□□ -0.69
MMP28-207ENST00000619655 SPINK7P58062 85 aa10.73□□□□□ -0.69
MMP28-207ENST00000619655 ABCA13Q86UQ4 5058 aa10.73□□□□□ -0.69
MMP28-207ENST00000619655 RPL37P61927 97 aaKnown RBP10.68□□□□□ -0.7
MMP28-207ENST00000619655 RBM12B-AS1Q9P1G2 102 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms