RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 CSMD1Q96PZ7 3565 aa8.4□□□□□ -1.07
CIITA-213ENST00000618327 LINC01554Q52M75 96 aa8.38□□□□□ -1.07
CIITA-213ENST00000618327 TENM3Q9P273 2699 aa8.37□□□□□ -1.07
CIITA-213ENST00000618327 LUZP6Q538Z0 58 aa8.37□□□□□ -1.07
CIITA-213ENST00000618327 KRTAP7-1Q8IUC3 87 aa8.36□□□□□ -1.07
CIITA-213ENST00000618327 SVEP1Q4LDE5 3571 aa8.35□□□□□ -1.07
CIITA-213ENST00000618327 DMBT1Q9UGM3 2413 aaPredicted RBP8.35□□□□□ -1.07
CIITA-213ENST00000618327 COX6B2Q6YFQ2 88 aa8.35□□□□□ -1.07
CIITA-213ENST00000618327 LINC01558Q9Y6Z2 57 aa8.35□□□□□ -1.07
CIITA-213ENST00000618327 LINC00472Q9H8W2 130 aa8.33□□□□□ -1.08
CIITA-213ENST00000618327 LINC00483Q53H64 154 aa8.33□□□□□ -1.08
CIITA-213ENST00000618327 HRES1P13985 223 aa8.33□□□□□ -1.08
CIITA-213ENST00000618327 KRTAP11-1Q8IUC1 163 aa8.33□□□□□ -1.08
CIITA-213ENST00000618327 A0A1B0GU33 70 aa8.32□□□□□ -1.08
CIITA-213ENST00000618327 PRAC1Q96KF2 57 aa8.31□□□□□ -1.08
CIITA-213ENST00000618327 VWFP04275 2813 aa8.3□□□□□ -1.08
CIITA-213ENST00000618327 ZFHX3Q15911 3703 aa8.3□□□□□ -1.08
CIITA-213ENST00000618327 MMP24-AS1A0A0U1RRL7 71 aa8.29□□□□□ -1.08
CIITA-213ENST00000618327 H3BS24 57 aa8.28□□□□□ -1.08
CIITA-213ENST00000618327 Q5VV11 94 aa8.28□□□□□ -1.08
CIITA-213ENST00000618327 Q5VSD8 79 aa8.27□□□□□ -1.09
CIITA-213ENST00000618327 FBN1P35555 2871 aaKnown RBP8.25□□□□□ -1.09
CIITA-213ENST00000618327 CSMD2Q7Z408 3487 aa8.24□□□□□ -1.09
CIITA-213ENST00000618327 OXTP01178 125 aa8.23□□□□□ -1.09
CIITA-213ENST00000618327 SPINK7P58062 85 aa8.2□□□□□ -1.1
CIITA-213ENST00000618327 A0A087X002 238 aa8.2□□□□□ -1.1
CIITA-213ENST00000618327 ANK3Q12955 4377 aaKnown RBP8.2□□□□□ -1.1
CIITA-213ENST00000618327 CSAG1Q6PB30 78 aa8.19□□□□□ -1.1
CIITA-213ENST00000618327 KRTAP13-1Q8IUC0 172 aa8.17□□□□□ -1.1
CIITA-213ENST00000618327 CAMK2N1Q7Z7J9 78 aa8.13□□□□□ -1.11
CIITA-213ENST00000618327 DMAC1Q96GE9 116 aa8.12□□□□□ -1.11
CIITA-213ENST00000618327 ZCCHC13Q8WW36 166 aaKnown RBP8.11□□□□□ -1.11
CIITA-213ENST00000618327 Q5W150 140 aa8.1□□□□□ -1.11
CIITA-213ENST00000618327 TENM2Q9NT68 2774 aa8.09□□□□□ -1.11
CIITA-213ENST00000618327 Q6ZSA8 131 aa8.07□□□□□ -1.12
CIITA-213ENST00000618327 PKD1L1Q8TDX9 2849 aa8.06□□□□□ -1.12
CIITA-213ENST00000618327 A0A0A0MQY5 61 aa8.06□□□□□ -1.12
CIITA-213ENST00000618327 KRTAP29-1A8MX34 341 aaPredicted RBP8.03□□□□□ -1.12
CIITA-213ENST00000618327 KRTAP13-2Q52LG2 175 aa8.03□□□□□ -1.12
CIITA-213ENST00000618327 CUBNO60494 3623 aa8.02□□□□□ -1.13
CIITA-213ENST00000618327 ASB16-AS1Q495Z4 193 aa8.01□□□□□ -1.13
CIITA-213ENST00000618327 TGP01266 2768 aa7.99□□□□□ -1.13
CIITA-213ENST00000618327 TRRAPQ9Y4A5 3859 aa7.98□□□□□ -1.13
CIITA-213ENST00000618327 NOTCH2NLQ7Z3S9 236 aa7.97□□□□□ -1.13
CIITA-213ENST00000618327 RPL37P61927 97 aaKnown RBP7.97□□□□□ -1.13
CIITA-213ENST00000618327 RPS29P62273 56 aaKnown RBP7.96□□□□□ -1.14
CIITA-213ENST00000618327 ROMO1P60602 79 aa7.93□□□□□ -1.14
CIITA-213ENST00000618327 S4R3F8 94 aa7.93□□□□□ -1.14
CIITA-213ENST00000618327 R4GN34 69 aa7.91□□□□□ -1.14
CIITA-213ENST00000618327 SEC61BP60468 96 aaKnown RBP7.87□□□□□ -1.15
CIITA-213ENST00000618327 H1FX-AS1Q4G0G2 97 aa7.86□□□□□ -1.15
CIITA-213ENST00000618327 VPS13CQ709C8 3753 aa7.85□□□□□ -1.15
CIITA-213ENST00000618327 KRTAP1-4P0C5Y4 121 aa7.83□□□□□ -1.16
CIITA-213ENST00000618327 SPATA8Q6RVD6 105 aa7.82□□□□□ -1.16
CIITA-213ENST00000618327 ZNF469Q96JG9 3925 aaPredicted RBP7.8□□□□□ -1.16
CIITA-213ENST00000618327 A6NN06 94 aa7.79□□□□□ -1.16
CIITA-213ENST00000618327 M0R2T5 61 aa7.78□□□□□ -1.16
CIITA-213ENST00000618327 M0QZ58 72 aa7.73□□□□□ -1.17
CIITA-213ENST00000618327 KRTAP16-1A8MUX0 517 aa7.72□□□□□ -1.17
CIITA-213ENST00000618327 A0A1B0GVY2 172 aa7.69□□□□□ -1.18
CIITA-213ENST00000618327 KRTAP25-1Q3LHN0 102 aa7.68□□□□□ -1.18
CIITA-213ENST00000618327 AKAP9Q99996 3911 aa7.68□□□□□ -1.18
CIITA-213ENST00000618327 FBN3Q75N90 2809 aa7.68□□□□□ -1.18
CIITA-213ENST00000618327 ADM2Q7Z4H4 148 aa7.67□□□□□ -1.18
CIITA-213ENST00000618327 A8MU10 97 aa7.66□□□□□ -1.18
CIITA-213ENST00000618327 A8MUU9 505 aa7.61□□□□□ -1.19
CIITA-213ENST00000618327 C20orf166-AS1Q96NR2 134 aa7.6□□□□□ -1.19
CIITA-213ENST00000618327 NDUFAF8A1L188 74 aa7.57□□□□□ -1.2
CIITA-213ENST00000618327 HUWE1Q7Z6Z7 4374 aaKnown RBP7.53□□□□□ -1.2
CIITA-213ENST00000618327 MEGF8Q7Z7M0 2845 aa7.53□□□□□ -1.2
CIITA-213ENST00000618327 XP32Q5T750 250 aa7.48□□□□□ -1.21
CIITA-213ENST00000618327 PLAC4Q8WY50 150 aa7.48□□□□□ -1.21
CIITA-213ENST00000618327 KRTAP10-8P60410 259 aa7.44□□□□□ -1.22
CIITA-213ENST00000618327 COL7A1Q02388 2944 aa7.42□□□□□ -1.22
CIITA-213ENST00000618327 SRRM2Q9UQ35 2752 aaKnown RBP7.41□□□□□ -1.22
CIITA-213ENST00000618327 TPRXLQ17RH7 258 aa7.4□□□□□ -1.23
CIITA-213ENST00000618327 KRTAP13-3Q3SY46 172 aa7.36□□□□□ -1.23
CIITA-213ENST00000618327 DNAH9Q9NYC9 4486 aa7.33□□□□□ -1.24
CIITA-213ENST00000618327 TNP1P09430 55 aa7.22□□□□□ -1.25
CIITA-213ENST00000618327 C10orf95Q9H7T3 257 aa7.2□□□□□ -1.26
CIITA-213ENST00000618327 DNHD1Q96M86 4753 aa7.16□□□□□ -1.26
CIITA-213ENST00000618327 H0YAA0 97 aa7.12□□□□□ -1.27
CIITA-213ENST00000618327 PLECQ15149 4684 aaKnown RBP7.12□□□□□ -1.27
CIITA-213ENST00000618327 PP632Q6XCG6 107 aa7.11□□□□□ -1.27
CIITA-213ENST00000618327 ALMS1Q8TCU4 4167 aa7.1□□□□□ -1.27
CIITA-213ENST00000618327 CSMD3Q7Z407 3707 aa7.09□□□□□ -1.27
CIITA-213ENST00000618327 KRTAP10-4P60372 401 aaPredicted RBP7.09□□□□□ -1.27
CIITA-213ENST00000618327 P0C880 135 aa7.08□□□□□ -1.28
CIITA-213ENST00000618327 MT1HL1P0DM35 61 aa7.04□□□□□ -1.28
CIITA-213ENST00000618327 ANK2Q01484 3957 aa7.02□□□□□ -1.29
CIITA-213ENST00000618327 DNAH1Q9P2D7 4330 aa7.01□□□□□ -1.29
CIITA-213ENST00000618327 VPS13DQ5THJ4 4388 aa6.97□□□□□ -1.29
CIITA-213ENST00000618327 PRKDCP78527 4128 aaKnown RBP6.96□□□□□ -1.3
CIITA-213ENST00000618327 DNAH5Q8TE73 4624 aa6.96□□□□□ -1.3
CIITA-213ENST00000618327 STARD9Q9P2P6 4700 aa6.95□□□□□ -1.3
CIITA-213ENST00000618327 KRTAP4-5Q9BYR2 181 aa6.93□□□□□ -1.3
CIITA-213ENST00000618327 DNAH11Q96DT5 4516 aa6.9□□□□□ -1.31
CIITA-213ENST00000618327 KRTAP3-1Q9BYR8 98 aa6.89□□□□□ -1.31
CIITA-213ENST00000618327 DNAH10Q8IVF4 4471 aa6.89□□□□□ -1.31
CIITA-213ENST00000618327 DNAH3Q8TD57 4116 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms