RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 LINC00483Q53H64 154 aa7.42□□□□□ -1.22
CIITA-212ENST00000618207 SPINK6Q6UWN8 80 aa7.4□□□□□ -1.22
CIITA-212ENST00000618207 CASC2Q6XLA1 102 aa7.4□□□□□ -1.22
CIITA-212ENST00000618207 A8MWP4 228 aa7.4□□□□□ -1.23
CIITA-212ENST00000618207 CHKB-CPT1BH3BT56 60 aa7.38□□□□□ -1.23
CIITA-212ENST00000618207 Q96NJ1 140 aa7.37□□□□□ -1.23
CIITA-212ENST00000618207 IGHV6-1A0A0B4J1U7 121 aa7.36□□□□□ -1.23
CIITA-212ENST00000618207 NDUFB1O75438 58 aa7.36□□□□□ -1.23
CIITA-212ENST00000618207 KRTAP21-3Q3LHN1 58 aa7.36□□□□□ -1.23
CIITA-212ENST00000618207 PRR4Q16378 134 aa7.35□□□□□ -1.23
CIITA-212ENST00000618207 LRP1BQ9NZR2 4599 aa7.35□□□□□ -1.23
CIITA-212ENST00000618207 PKD1P98161 4303 aa7.35□□□□□ -1.23
CIITA-212ENST00000618207 ALMS1Q8TCU4 4167 aa7.34□□□□□ -1.23
CIITA-212ENST00000618207 KRTAP29-1A8MX34 341 aaPredicted RBP7.34□□□□□ -1.23
CIITA-212ENST00000618207 FAT2Q9NYQ8 4349 aa7.33□□□□□ -1.24
CIITA-212ENST00000618207 A0A087X002 238 aa7.33□□□□□ -1.24
CIITA-212ENST00000618207 LINC00208Q96KT6 92 aa7.33□□□□□ -1.24
CIITA-212ENST00000618207 MMP24-AS1A0A0U1RRL7 71 aa7.33□□□□□ -1.24
CIITA-212ENST00000618207 CYP4F30PQ9H0H9 118 aa7.32□□□□□ -1.24
CIITA-212ENST00000618207 CDK2AP2O75956 126 aa7.32□□□□□ -1.24
CIITA-212ENST00000618207 Q6ZSA8 131 aa7.31□□□□□ -1.24
CIITA-212ENST00000618207 LIMD2Q9BT23 127 aa7.31□□□□□ -1.24
CIITA-212ENST00000618207 PKHD1P08F94 4074 aa7.31□□□□□ -1.24
CIITA-212ENST00000618207 NOTCH2NLQ7Z3S9 236 aa7.31□□□□□ -1.24
CIITA-212ENST00000618207 LINC01554Q52M75 96 aa7.29□□□□□ -1.24
CIITA-212ENST00000618207 H0Y9P7 68 aa7.29□□□□□ -1.24
CIITA-212ENST00000618207 MP68P56378 58 aa7.29□□□□□ -1.24
CIITA-212ENST00000618207 SMR3BP02814 79 aaPredicted RBP7.28□□□□□ -1.24
CIITA-212ENST00000618207 LINC00313P59037 77 aa7.28□□□□□ -1.24
CIITA-212ENST00000618207 LCE6AA0A183 80 aa7.28□□□□□ -1.24
CIITA-212ENST00000618207 C8orf17Q9NRJ1 99 aa7.28□□□□□ -1.24
CIITA-212ENST00000618207 VPS13BQ7Z7G8 4022 aa7.27□□□□□ -1.25
CIITA-212ENST00000618207 CDC42SE1Q9NRR8 79 aa7.27□□□□□ -1.25
CIITA-212ENST00000618207 A6NED7 52 aa7.27□□□□□ -1.25
CIITA-212ENST00000618207 KRTAP13-2Q52LG2 175 aa7.27□□□□□ -1.25
CIITA-212ENST00000618207 A0A1B0GVX0 72 aa7.26□□□□□ -1.25
CIITA-212ENST00000618207 Q75L30 129 aa7.26□□□□□ -1.25
CIITA-212ENST00000618207 PRR15LQ9BU68 103 aa7.26□□□□□ -1.25
CIITA-212ENST00000618207 Q8N9P0 234 aaPredicted RBP7.25□□□□□ -1.25
CIITA-212ENST00000618207 ZCCHC13Q8WW36 166 aaKnown RBP7.25□□□□□ -1.25
CIITA-212ENST00000618207 SACSQ9NZJ4 4579 aa7.24□□□□□ -1.25
CIITA-212ENST00000618207 SSBP3-AS1Q7Z2R9 100 aa7.23□□□□□ -1.25
CIITA-212ENST00000618207 PLA2G1BP04054 148 aaKnown RBP7.22□□□□□ -1.25
CIITA-212ENST00000618207 PCOTHQ58A44 107 aa7.2□□□□□ -1.26
CIITA-212ENST00000618207 KRTAP1-4P0C5Y4 121 aa7.19□□□□□ -1.26
CIITA-212ENST00000618207 LOC101927531A0A1B0GV80 90 aa7.19□□□□□ -1.26
CIITA-212ENST00000618207 MRPL34Q9BQ48 92 aaKnown RBP7.19□□□□□ -1.26
CIITA-212ENST00000618207 RETNLBQ9BQ08 111 aa7.17□□□□□ -1.26
CIITA-212ENST00000618207 PRAC1Q96KF2 57 aa7.16□□□□□ -1.26
CIITA-212ENST00000618207 TYMSOSQ8TAI1 123 aa7.15□□□□□ -1.26
CIITA-212ENST00000618207 ASB16-AS1Q495Z4 193 aa7.15□□□□□ -1.26
CIITA-212ENST00000618207 KMT2CQ8NEZ4 4911 aaKnown RBP7.14□□□□□ -1.27
CIITA-212ENST00000618207 DYNC1H1Q14204 4646 aaKnown RBP7.13□□□□□ -1.27
CIITA-212ENST00000618207 FAT1Q14517 4588 aa7.12□□□□□ -1.27
CIITA-212ENST00000618207 TP53AIP1Q9HCN2 124 aa7.12□□□□□ -1.27
CIITA-212ENST00000618207 Q5W150 140 aa7.11□□□□□ -1.27
CIITA-212ENST00000618207 H3BPC8 53 aa7.09□□□□□ -1.27
CIITA-212ENST00000618207 A0A1B0GVY2 172 aa7.08□□□□□ -1.28
CIITA-212ENST00000618207 ADM2Q7Z4H4 148 aa7.05□□□□□ -1.28
CIITA-212ENST00000618207 SPANXA2-OT1Q8N9U9 137 aa7.05□□□□□ -1.28
CIITA-212ENST00000618207 RYR2Q92736 4967 aa7.03□□□□□ -1.28
CIITA-212ENST00000618207 LINC00304Q8N9R0 145 aa7.03□□□□□ -1.28
CIITA-212ENST00000618207 SPINK1P00995 79 aa7.01□□□□□ -1.29
CIITA-212ENST00000618207 LINC01558Q9Y6Z2 57 aa7□□□□□ -1.29
CIITA-212ENST00000618207 IGLV7-46A0A075B6I9 117 aa7□□□□□ -1.29
CIITA-212ENST00000618207 A0A0A0MQY5 61 aa7□□□□□ -1.29
CIITA-212ENST00000618207 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
CIITA-212ENST00000618207 SPINK7P58062 85 aa6.99□□□□□ -1.29
CIITA-212ENST00000618207 FLG2Q5D862 2391 aaPredicted RBP6.99□□□□□ -1.29
CIITA-212ENST00000618207 COA5Q86WW8 74 aa6.97□□□□□ -1.29
CIITA-212ENST00000618207 KRTAP13-3Q3SY46 172 aa6.97□□□□□ -1.29
CIITA-212ENST00000618207 KRTAP10-4P60372 401 aaPredicted RBP6.96□□□□□ -1.3
CIITA-212ENST00000618207 KRTAP16-1A8MUX0 517 aa6.95□□□□□ -1.3
CIITA-212ENST00000618207 C9orf92A6NGG3 77 aa6.95□□□□□ -1.3
CIITA-212ENST00000618207 IGKV2D-30A0A075B6S6 120 aa6.95□□□□□ -1.3
CIITA-212ENST00000618207 IGKV2-30P06310 120 aa6.95□□□□□ -1.3
CIITA-212ENST00000618207 DMBT1Q9UGM3 2413 aaPredicted RBP6.94□□□□□ -1.3
CIITA-212ENST00000618207 FAM229AH3BQW9 127 aa6.94□□□□□ -1.3
CIITA-212ENST00000618207 HRES1P13985 223 aa6.91□□□□□ -1.3
CIITA-212ENST00000618207 SPAG11AQ6PDA7 123 aa6.91□□□□□ -1.3
CIITA-212ENST00000618207 LRP1Q07954 4544 aaKnown RBP6.89□□□□□ -1.31
CIITA-212ENST00000618207 RYR3Q15413 4870 aa6.89□□□□□ -1.31
CIITA-212ENST00000618207 CSAG1Q6PB30 78 aa6.86□□□□□ -1.31
CIITA-212ENST00000618207 Q5VSD8 79 aa6.85□□□□□ -1.31
CIITA-212ENST00000618207 Q8N1X5 172 aa6.82□□□□□ -1.32
CIITA-212ENST00000618207 RPS29P62273 56 aaKnown RBP6.81□□□□□ -1.32
CIITA-212ENST00000618207 ROMO1P60602 79 aa6.8□□□□□ -1.32
CIITA-212ENST00000618207 PKHD1L1Q86WI1 4243 aa6.8□□□□□ -1.32
CIITA-212ENST00000618207 ACYP2P14621 99 aa6.8□□□□□ -1.32
CIITA-212ENST00000618207 KRTAP17-1Q9BYP8 105 aa6.79□□□□□ -1.32
CIITA-212ENST00000618207 KIAA1109Q2LD37 5005 aa6.79□□□□□ -1.32
CIITA-212ENST00000618207 HSPG2P98160 4391 aa6.78□□□□□ -1.32
CIITA-212ENST00000618207 DMAC1Q96GE9 116 aa6.76□□□□□ -1.33
CIITA-212ENST00000618207 MYCBP2O75592 4640 aa6.73□□□□□ -1.33
CIITA-212ENST00000618207 RYR1P21817 5038 aa6.7□□□□□ -1.34
CIITA-212ENST00000618207 SPATA8Q6RVD6 105 aa6.7□□□□□ -1.34
CIITA-212ENST00000618207 C20orf166-AS1Q96NR2 134 aa6.69□□□□□ -1.34
CIITA-212ENST00000618207 A8MUU9 505 aa6.69□□□□□ -1.34
CIITA-212ENST00000618207 KRTAP10-8P60410 259 aa6.69□□□□□ -1.34
CIITA-212ENST00000618207 MIR22HGQ0VDD5 57 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms