RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 A0A1B0GW54 56 aa10.21□□□□□ -0.78
CDX1-202ENST00000616154 A0A087WSZ3 146 aa10.15□□□□□ -0.78
CDX1-202ENST00000616154 VPS25Q9BRG1 176 aa10.14□□□□□ -0.79
CDX1-202ENST00000616154 SS18L2Q9UHA2 77 aa10.13□□□□□ -0.79
CDX1-202ENST00000616154 LORP23490 312 aaPredicted RBP10.11□□□□□ -0.79
CDX1-202ENST00000616154 RPL37P61927 97 aaKnown RBP10.11□□□□□ -0.79
CDX1-202ENST00000616154 KRTAP10-6P60371 365 aaPredicted RBP10.09□□□□□ -0.79
CDX1-202ENST00000616154 FLGP20930 4061 aaPredicted RBP10.08□□□□□ -0.8
CDX1-202ENST00000616154 Q96NJ1 140 aa10.07□□□□□ -0.8
CDX1-202ENST00000616154 FAM240AA0A1B0GVK7 77 aa10.06□□□□□ -0.8
CDX1-202ENST00000616154 LINC00472Q9H8W2 130 aa10.06□□□□□ -0.8
CDX1-202ENST00000616154 LINC00846Q9NV44 126 aa10.03□□□□□ -0.8
CDX1-202ENST00000616154 M0R2T5 61 aa10.02□□□□□ -0.81
CDX1-202ENST00000616154 ACYP1P07311 99 aa10.02□□□□□ -0.81
CDX1-202ENST00000616154 COX6B2Q6YFQ2 88 aa10.02□□□□□ -0.81
CDX1-202ENST00000616154 NREPQ16612 68 aa9.98□□□□□ -0.81
CDX1-202ENST00000616154 Q6ZVQ6 151 aa9.98□□□□□ -0.81
CDX1-202ENST00000616154 J3QR89 54 aa9.96□□□□□ -0.82
CDX1-202ENST00000616154 J3KT08 172 aa9.94□□□□□ -0.82
CDX1-202ENST00000616154 Q75L30 129 aa9.94□□□□□ -0.82
CDX1-202ENST00000616154 UBL5Q9BZL1 73 aa9.94□□□□□ -0.82
CDX1-202ENST00000616154 IGKV4-1P06312 121 aa9.91□□□□□ -0.82
CDX1-202ENST00000616154 DEFB116Q30KQ4 102 aa9.91□□□□□ -0.82
CDX1-202ENST00000616154 K7ERU9 68 aa9.88□□□□□ -0.83
CDX1-202ENST00000616154 DSCR10P59022 87 aa9.87□□□□□ -0.83
CDX1-202ENST00000616154 SIGMAR1Q99720 223 aa9.87□□□□□ -0.83
CDX1-202ENST00000616154 BPY2O14599 106 aa9.86□□□□□ -0.83
CDX1-202ENST00000616154 A8MWP4 228 aa9.85□□□□□ -0.83
CDX1-202ENST00000616154 ATP11AUNQ6ZP68 121 aa9.85□□□□□ -0.83
CDX1-202ENST00000616154 C20orf166-AS1Q96NR2 134 aa9.85□□□□□ -0.83
CDX1-202ENST00000616154 IGKV3D-7A0A0C4DH55 119 aa9.82□□□□□ -0.84
CDX1-202ENST00000616154 A0A1B0GVX0 72 aa9.82□□□□□ -0.84
CDX1-202ENST00000616154 A8MUU9 505 aa9.82□□□□□ -0.84
CDX1-202ENST00000616154 CXCL6P80162 114 aa9.82□□□□□ -0.84
CDX1-202ENST00000616154 LINC00643Q86TS7 51 aa9.81□□□□□ -0.84
CDX1-202ENST00000616154 PRR15Q8IV56 129 aa9.81□□□□□ -0.84
CDX1-202ENST00000616154 ATP5EP2Q5VTU8 51 aa9.8□□□□□ -0.84
CDX1-202ENST00000616154 NDUFB1O75438 58 aa9.79□□□□□ -0.84
CDX1-202ENST00000616154 K7EQZ3 153 aa9.78□□□□□ -0.84
CDX1-202ENST00000616154 C8orf87E5RJ46 101 aa9.76□□□□□ -0.85
CDX1-202ENST00000616154 NOTCH2NLQ7Z3S9 236 aa9.76□□□□□ -0.85
CDX1-202ENST00000616154 IGHV6-1A0A0B4J1U7 121 aa9.75□□□□□ -0.85
CDX1-202ENST00000616154 KRTAP16-1A8MUX0 517 aa9.73□□□□□ -0.85
CDX1-202ENST00000616154 LINC00313P59037 77 aa9.73□□□□□ -0.85
CDX1-202ENST00000616154 Q8N9L7 120 aa9.73□□□□□ -0.85
CDX1-202ENST00000616154 C8orf17Q9NRJ1 99 aa9.72□□□□□ -0.85
CDX1-202ENST00000616154 MMP24-AS1A0A0U1RRL7 71 aa9.7□□□□□ -0.86
CDX1-202ENST00000616154 KRTAP9-8Q9BYQ0 159 aa9.66□□□□□ -0.86
CDX1-202ENST00000616154 TMEM254Q8TBM7 123 aa9.62□□□□□ -0.87
CDX1-202ENST00000616154 USH2AO75445 5202 aa9.62□□□□□ -0.87
CDX1-202ENST00000616154 hDV103S1A0JD37 113 aa9.61□□□□□ -0.87
CDX1-202ENST00000616154 HCG22E2RYF7 251 aa9.61□□□□□ -0.87
CDX1-202ENST00000616154 Q8N9P0 234 aaPredicted RBP9.61□□□□□ -0.87
CDX1-202ENST00000616154 SSPOA2VEC9 5147 aa9.59□□□□□ -0.87
CDX1-202ENST00000616154 MT-ATP8P03928 68 aa9.59□□□□□ -0.87
CDX1-202ENST00000616154 IMUPQ9GZP8 106 aa9.59□□□□□ -0.87
CDX1-202ENST00000616154 CASC2Q6XLA1 102 aa9.58□□□□□ -0.88
CDX1-202ENST00000616154 MRPL34Q9BQ48 92 aaKnown RBP9.58□□□□□ -0.88
CDX1-202ENST00000616154 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.57□□□□□ -0.88
CDX1-202ENST00000616154 HIST1H4AP62805 103 aaKnown RBP9.57□□□□□ -0.88
CDX1-202ENST00000616154 WFDC13Q8IUB5 93 aa9.56□□□□□ -0.88
CDX1-202ENST00000616154 A0A087WVE0 104 aa9.55□□□□□ -0.88
CDX1-202ENST00000616154 KRTAP9-7A8MTY7 169 aa9.53□□□□□ -0.88
CDX1-202ENST00000616154 MPLKIPQ8TAP9 179 aa9.52□□□□□ -0.89
CDX1-202ENST00000616154 MT2AP02795 61 aa9.5□□□□□ -0.89
CDX1-202ENST00000616154 FAM236DA0A1B0GTK5 79 aa9.48□□□□□ -0.89
CDX1-202ENST00000616154 FAM236CP0DP71 79 aa9.48□□□□□ -0.89
CDX1-202ENST00000616154 HRES1P13985 223 aa9.48□□□□□ -0.89
CDX1-202ENST00000616154 ZCCHC13Q8WW36 166 aaKnown RBP9.43□□□□□ -0.9
CDX1-202ENST00000616154 RBM12B-AS1Q9P1G2 102 aa9.43□□□□□ -0.9
CDX1-202ENST00000616154 MT1FP04733 61 aa9.42□□□□□ -0.9
CDX1-202ENST00000616154 FCGBPQ9Y6R7 5405 aaPredicted RBP9.41□□□□□ -0.9
CDX1-202ENST00000616154 NDUFS5O43920 106 aa9.4□□□□□ -0.9
CDX1-202ENST00000616154 TP53AIP1Q9HCN2 124 aa9.4□□□□□ -0.9
CDX1-202ENST00000616154 LCE2BO14633 110 aa9.38□□□□□ -0.91
CDX1-202ENST00000616154 Q5W150 140 aa9.37□□□□□ -0.91
CDX1-202ENST00000616154 KRTAP9-3Q9BYQ3 159 aa9.36□□□□□ -0.91
CDX1-202ENST00000616154 OCR1Q9BZK8 76 aa9.36□□□□□ -0.91
CDX1-202ENST00000616154 KRTAP19-1Q8IUB9 90 aa9.35□□□□□ -0.91
CDX1-202ENST00000616154 FAM236AA0A1B0GUQ0 79 aa9.34□□□□□ -0.91
CDX1-202ENST00000616154 FAM236BA0A1B0GV22 79 aa9.34□□□□□ -0.91
CDX1-202ENST00000616154 KRTAP10-10P60014 251 aa9.34□□□□□ -0.91
CDX1-202ENST00000616154 SPINK7P58062 85 aa9.33□□□□□ -0.92
CDX1-202ENST00000616154 UQCRQO14949 82 aa9.31□□□□□ -0.92
CDX1-202ENST00000616154 SCGB1A1P11684 91 aa9.29□□□□□ -0.92
CDX1-202ENST00000616154 TRAV22A0A0B4J277 110 aa9.26□□□□□ -0.93
CDX1-202ENST00000616154 SMIM20Q8N5G0 67 aa9.25□□□□□ -0.93
CDX1-202ENST00000616154 ATOX1O00244 68 aa9.24□□□□□ -0.93
CDX1-202ENST00000616154 TRAV7A0A075B6U4 112 aa9.22□□□□□ -0.93
CDX1-202ENST00000616154 MACF1Q9UPN3 7388 aaKnown RBP9.21□□□□□ -0.94
CDX1-202ENST00000616154 IGKV2-30P06310 120 aa9.2□□□□□ -0.94
CDX1-202ENST00000616154 H0Y9P7 68 aa9.19□□□□□ -0.94
CDX1-202ENST00000616154 C5orf47Q569G3 176 aa9.19□□□□□ -0.94
CDX1-202ENST00000616154 C7orf65Q6ZTY9 151 aa9.18□□□□□ -0.94
CDX1-202ENST00000616154 SYNE2Q8WXH0 6885 aaKnown RBP9.15□□□□□ -0.94
CDX1-202ENST00000616154 IGKV2D-30A0A075B6S6 120 aa9.14□□□□□ -0.95
CDX1-202ENST00000616154 LOC101927531A0A1B0GV80 90 aa9.14□□□□□ -0.95
CDX1-202ENST00000616154 H3BPC8 53 aa9.13□□□□□ -0.95
CDX1-202ENST00000616154 MP68P56378 58 aa9.13□□□□□ -0.95
CDX1-202ENST00000616154 SERP2Q8N6R1 65 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms