RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 FP248Q71RG6 208 aaPredicted RBP5.29□□□□□ -1.56
PDLIM5-222ENST00000615540 J3QL48 77 aa5.29□□□□□ -1.56
PDLIM5-222ENST00000615540 A0A087X002 238 aa5.28□□□□□ -1.56
PDLIM5-222ENST00000615540 TENM1Q9UKZ4 2725 aa5.28□□□□□ -1.56
PDLIM5-222ENST00000615540 IGLV7-46A0A075B6I9 117 aa5.28□□□□□ -1.56
PDLIM5-222ENST00000615540 NOTCH2NLQ7Z3S9 236 aa5.28□□□□□ -1.56
PDLIM5-222ENST00000615540 DNAH10Q8IVF4 4471 aa5.27□□□□□ -1.57
PDLIM5-222ENST00000615540 NSD1Q96L73 2696 aaPredicted RBP5.26□□□□□ -1.57
PDLIM5-222ENST00000615540 VWFP04275 2813 aa5.26□□□□□ -1.57
PDLIM5-222ENST00000615540 Q5W150 140 aa5.26□□□□□ -1.57
PDLIM5-222ENST00000615540 Q1T7F1 81 aa5.26□□□□□ -1.57
PDLIM5-222ENST00000615540 CYP4F30PQ9H0H9 118 aa5.26□□□□□ -1.57
PDLIM5-222ENST00000615540 MIR22HGQ0VDD5 57 aa5.24□□□□□ -1.57
PDLIM5-222ENST00000615540 FRAS1Q86XX4 4008 aa5.23□□□□□ -1.57
PDLIM5-222ENST00000615540 KRTAP29-1A8MX34 341 aaPredicted RBP5.22□□□□□ -1.57
PDLIM5-222ENST00000615540 DNAH7Q8WXX0 4024 aa5.22□□□□□ -1.57
PDLIM5-222ENST00000615540 LCE6AA0A183 80 aa5.22□□□□□ -1.57
PDLIM5-222ENST00000615540 UQCR11O14957 56 aa5.21□□□□□ -1.58
PDLIM5-222ENST00000615540 KRTAP13-1Q8IUC0 172 aa5.21□□□□□ -1.58
PDLIM5-222ENST00000615540 ZCCHC13Q8WW36 166 aaKnown RBP5.2□□□□□ -1.58
PDLIM5-222ENST00000615540 Q5VSD8 79 aa5.2□□□□□ -1.58
PDLIM5-222ENST00000615540 KMT2BQ9UMN6 2715 aaPredicted RBP5.18□□□□□ -1.58
PDLIM5-222ENST00000615540 PKD1L1Q8TDX9 2849 aa5.18□□□□□ -1.58
PDLIM5-222ENST00000615540 A0A0D9SG42 100 aa5.18□□□□□ -1.58
PDLIM5-222ENST00000615540 Q5VV11 94 aa5.16□□□□□ -1.58
PDLIM5-222ENST00000615540 KRTAP13-2Q52LG2 175 aa5.16□□□□□ -1.58
PDLIM5-222ENST00000615540 CDC42SE1Q9NRR8 79 aa5.16□□□□□ -1.58
PDLIM5-222ENST00000615540 NBEAL1Q6ZS30 2694 aa5.15□□□□□ -1.58
PDLIM5-222ENST00000615540 Q75L30 129 aa5.15□□□□□ -1.59
PDLIM5-222ENST00000615540 SPINK7P58062 85 aa5.13□□□□□ -1.59
PDLIM5-222ENST00000615540 COX6B2Q6YFQ2 88 aa5.13□□□□□ -1.59
PDLIM5-222ENST00000615540 KMT2AQ03164 3969 aa5.12□□□□□ -1.59
PDLIM5-222ENST00000615540 LINC01558Q9Y6Z2 57 aa5.12□□□□□ -1.59
PDLIM5-222ENST00000615540 RBM12B-AS1Q9P1G2 102 aa5.1□□□□□ -1.59
PDLIM5-222ENST00000615540 LINC01554Q52M75 96 aa5.09□□□□□ -1.59
PDLIM5-222ENST00000615540 Q6ZSA8 131 aa5.09□□□□□ -1.59
PDLIM5-222ENST00000615540 KTN1-AS1Q86SY8 53 aa5.09□□□□□ -1.59
PDLIM5-222ENST00000615540 TENM3Q9P273 2699 aa5.08□□□□□ -1.6
PDLIM5-222ENST00000615540 S4R3F8 94 aa5.06□□□□□ -1.6
PDLIM5-222ENST00000615540 DMAC1Q96GE9 116 aa5.06□□□□□ -1.6
PDLIM5-222ENST00000615540 DNAH9Q9NYC9 4486 aa5.06□□□□□ -1.6
PDLIM5-222ENST00000615540 SPINT4Q6UDR6 99 aa5.05□□□□□ -1.6
PDLIM5-222ENST00000615540 A0A1B0GU33 70 aa5.04□□□□□ -1.6
PDLIM5-222ENST00000615540 PRAC1Q96KF2 57 aa5.02□□□□□ -1.61
PDLIM5-222ENST00000615540 ASB16-AS1Q495Z4 193 aa5.01□□□□□ -1.61
PDLIM5-222ENST00000615540 TENM2Q9NT68 2774 aa4.99□□□□□ -1.61
PDLIM5-222ENST00000615540 A8MU10 97 aa4.98□□□□□ -1.61
PDLIM5-222ENST00000615540 KRTAP1-4P0C5Y4 121 aa4.97□□□□□ -1.61
PDLIM5-222ENST00000615540 SPATA8Q6RVD6 105 aa4.97□□□□□ -1.61
PDLIM5-222ENST00000615540 LCA10Q71F78 164 aa4.96□□□□□ -1.61
PDLIM5-222ENST00000615540 PRKDCP78527 4128 aaKnown RBP4.96□□□□□ -1.62
PDLIM5-222ENST00000615540 CRIPTQ9P021 101 aa4.95□□□□□ -1.62
PDLIM5-222ENST00000615540 PLECQ15149 4684 aaKnown RBP4.94□□□□□ -1.62
PDLIM5-222ENST00000615540 H1FX-AS1Q4G0G2 97 aa4.92□□□□□ -1.62
PDLIM5-222ENST00000615540 RPS29P62273 56 aaKnown RBP4.92□□□□□ -1.62
PDLIM5-222ENST00000615540 DNAH1Q9P2D7 4330 aa4.91□□□□□ -1.62
PDLIM5-222ENST00000615540 KRTAP21-3Q3LHN1 58 aa4.91□□□□□ -1.62
PDLIM5-222ENST00000615540 STARD9Q9P2P6 4700 aa4.9□□□□□ -1.63
PDLIM5-222ENST00000615540 DNAH6Q9C0G6 4158 aa4.9□□□□□ -1.63
PDLIM5-222ENST00000615540 CSAG1Q6PB30 78 aa4.89□□□□□ -1.63
PDLIM5-222ENST00000615540 ADM2Q7Z4H4 148 aa4.89□□□□□ -1.63
PDLIM5-222ENST00000615540 VPS13DQ5THJ4 4388 aa4.88□□□□□ -1.63
PDLIM5-222ENST00000615540 TGP01266 2768 aa4.88□□□□□ -1.63
PDLIM5-222ENST00000615540 M0R2T5 61 aa4.86□□□□□ -1.63
PDLIM5-222ENST00000615540 DNAH3Q8TD57 4116 aa4.85□□□□□ -1.63
PDLIM5-222ENST00000615540 STAB2Q8WWQ8 2551 aa4.85□□□□□ -1.63
PDLIM5-222ENST00000615540 KRTAP16-1A8MUX0 517 aa4.84□□□□□ -1.64
PDLIM5-222ENST00000615540 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
PDLIM5-222ENST00000615540 RPL37P61927 97 aaKnown RBP4.83□□□□□ -1.64
PDLIM5-222ENST00000615540 ALMS1Q8TCU4 4167 aa4.81□□□□□ -1.64
PDLIM5-222ENST00000615540 COL7A1Q02388 2944 aa4.81□□□□□ -1.64
PDLIM5-222ENST00000615540 A8MUU9 505 aa4.81□□□□□ -1.64
PDLIM5-222ENST00000615540 SRRM2Q9UQ35 2752 aaKnown RBP4.81□□□□□ -1.64
PDLIM5-222ENST00000615540 A0A1B0GVY2 172 aa4.8□□□□□ -1.64
PDLIM5-222ENST00000615540 C20orf166-AS1Q96NR2 134 aa4.8□□□□□ -1.64
PDLIM5-222ENST00000615540 M0QZ58 72 aa4.8□□□□□ -1.64
PDLIM5-222ENST00000615540 A6NN06 94 aa4.8□□□□□ -1.64
PDLIM5-222ENST00000615540 DNAH2Q9P225 4427 aa4.8□□□□□ -1.64
PDLIM5-222ENST00000615540 R4GN34 69 aa4.79□□□□□ -1.64
PDLIM5-222ENST00000615540 CAMK2N1Q7Z7J9 78 aa4.78□□□□□ -1.64
PDLIM5-222ENST00000615540 XP32Q5T750 250 aa4.76□□□□□ -1.65
PDLIM5-222ENST00000615540 ROMO1P60602 79 aa4.76□□□□□ -1.65
PDLIM5-222ENST00000615540 HECTD4Q9Y4D8 3996 aa4.76□□□□□ -1.65
PDLIM5-222ENST00000615540 DNAH17Q9UFH2 4485 aa4.74□□□□□ -1.65
PDLIM5-222ENST00000615540 DNAH11Q96DT5 4516 aa4.73□□□□□ -1.65
PDLIM5-222ENST00000615540 DNAH8Q96JB1 4490 aa4.73□□□□□ -1.65
PDLIM5-222ENST00000615540 KRTAP13-3Q3SY46 172 aa4.71□□□□□ -1.66
PDLIM5-222ENST00000615540 VPS13BQ7Z7G8 4022 aa4.69□□□□□ -1.66
PDLIM5-222ENST00000615540 DNHD1Q96M86 4753 aa4.68□□□□□ -1.66
PDLIM5-222ENST00000615540 FBN3Q75N90 2809 aa4.68□□□□□ -1.66
PDLIM5-222ENST00000615540 DYNC2H1Q8NCM8 4307 aaKnown RBP4.67□□□□□ -1.66
PDLIM5-222ENST00000615540 HYDINQ4G0P3 5121 aa4.66□□□□□ -1.66
PDLIM5-222ENST00000615540 FLG2Q5D862 2391 aaPredicted RBP4.65□□□□□ -1.66
PDLIM5-222ENST00000615540 H0YAA0 97 aa4.64□□□□□ -1.67
PDLIM5-222ENST00000615540 FAT2Q9NYQ8 4349 aa4.63□□□□□ -1.67
PDLIM5-222ENST00000615540 MEGF8Q7Z7M0 2845 aa4.62□□□□□ -1.67
PDLIM5-222ENST00000615540 PKHD1P08F94 4074 aa4.61□□□□□ -1.67
PDLIM5-222ENST00000615540 KRTAP25-1Q3LHN0 102 aa4.61□□□□□ -1.67
PDLIM5-222ENST00000615540 KRTAP10-8P60410 259 aa4.59□□□□□ -1.67
PDLIM5-222ENST00000615540 DNAH5Q8TE73 4624 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms