RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 MMP24-AS1A0A0U1RRL7 71 aa13.48□□□□□ -0.25
POLR2J3-220ENST00000613744 FAT2Q9NYQ8 4349 aa13.48□□□□□ -0.25
POLR2J3-220ENST00000613744 PRLHP81277 87 aa13.44□□□□□ -0.26
POLR2J3-220ENST00000613744 C14orf177Q52M58 125 aa13.44□□□□□ -0.26
POLR2J3-220ENST00000613744 H0Y9J4 135 aa13.43□□□□□ -0.26
POLR2J3-220ENST00000613744 ASB16-AS1Q495Z4 193 aa13.42□□□□□ -0.26
POLR2J3-220ENST00000613744 MOBPQ13875 183 aa13.4□□□□□ -0.26
POLR2J3-220ENST00000613744 KRTAP10-2P60368 255 aa13.39□□□□□ -0.27
POLR2J3-220ENST00000613744 HECTD4Q9Y4D8 3996 aa13.38□□□□□ -0.27
POLR2J3-220ENST00000613744 DNAH11Q96DT5 4516 aa13.38□□□□□ -0.27
POLR2J3-220ENST00000613744 PKD1P98161 4303 aa13.37□□□□□ -0.27
POLR2J3-220ENST00000613744 SPAG11AQ6PDA7 123 aa13.33□□□□□ -0.27
POLR2J3-220ENST00000613744 PCOTHQ58A44 107 aa13.33□□□□□ -0.28
POLR2J3-220ENST00000613744 IGLV5-52A0A0A0MRZ9 124 aa13.32□□□□□ -0.28
POLR2J3-220ENST00000613744 A0A096LNI7 61 aa13.31□□□□□ -0.28
POLR2J3-220ENST00000613744 A0A1B0GVY2 172 aa13.3□□□□□ -0.28
POLR2J3-220ENST00000613744 IGKV2-24A0A0C4DH68 120 aa13.28□□□□□ -0.28
POLR2J3-220ENST00000613744 DNAH5Q8TE73 4624 aa13.27□□□□□ -0.28
POLR2J3-220ENST00000613744 PKHD1P08F94 4074 aa13.27□□□□□ -0.29
POLR2J3-220ENST00000613744 HRES1P13985 223 aa13.27□□□□□ -0.29
POLR2J3-220ENST00000613744 C8orf17Q9NRJ1 99 aa13.25□□□□□ -0.29
POLR2J3-220ENST00000613744 SPINK7P58062 85 aa13.25□□□□□ -0.29
POLR2J3-220ENST00000613744 CHTF8P0CG12 524 aa13.22□□□□□ -0.29
POLR2J3-220ENST00000613744 Q96NJ1 140 aa13.22□□□□□ -0.29
POLR2J3-220ENST00000613744 KRTAP10-1P60331 282 aa13.18□□□□□ -0.3
POLR2J3-220ENST00000613744 EPPK1P58107 5090 aaKnown RBP13.16□□□□□ -0.3
POLR2J3-220ENST00000613744 PANO1I0J062 215 aa13.16□□□□□ -0.3
POLR2J3-220ENST00000613744 A0A1B0GVX0 72 aa13.14□□□□□ -0.31
POLR2J3-220ENST00000613744 MRPL34Q9BQ48 92 aaKnown RBP13.14□□□□□ -0.31
POLR2J3-220ENST00000613744 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.14□□□□□ -0.31
POLR2J3-220ENST00000613744 KRTAP11-1Q8IUC1 163 aa13.13□□□□□ -0.31
POLR2J3-220ENST00000613744 DYNC1H1Q14204 4646 aaKnown RBP13.11□□□□□ -0.31
POLR2J3-220ENST00000613744 A0A087X002 238 aa13.11□□□□□ -0.31
POLR2J3-220ENST00000613744 LRP1BQ9NZR2 4599 aa13.1□□□□□ -0.31
POLR2J3-220ENST00000613744 KRTAP13-1Q8IUC0 172 aa13.09□□□□□ -0.31
POLR2J3-220ENST00000613744 SPACA4Q8TDM5 124 aa13.08□□□□□ -0.32
POLR2J3-220ENST00000613744 CDK2AP2O75956 126 aa13.07□□□□□ -0.32
POLR2J3-220ENST00000613744 C8orf87E5RJ46 101 aa13.04□□□□□ -0.32
POLR2J3-220ENST00000613744 LINC00313P59037 77 aa13.04□□□□□ -0.32
POLR2J3-220ENST00000613744 IGHV6-1A0A0B4J1U7 121 aa13.03□□□□□ -0.32
POLR2J3-220ENST00000613744 PLA2G1BP04054 148 aaKnown RBP13.03□□□□□ -0.32
POLR2J3-220ENST00000613744 ACYP2P14621 99 aa13.03□□□□□ -0.32
POLR2J3-220ENST00000613744 LINC00483Q53H64 154 aa13.01□□□□□ -0.33
POLR2J3-220ENST00000613744 Q6ZSA8 131 aa13.01□□□□□ -0.33
POLR2J3-220ENST00000613744 DNAH8Q96JB1 4490 aa13□□□□□ -0.33
POLR2J3-220ENST00000613744 PRR26Q8N8Z3 221 aa12.98□□□□□ -0.33
POLR2J3-220ENST00000613744 CIRBP-AS1Q8TBR5 109 aa12.98□□□□□ -0.33
POLR2J3-220ENST00000613744 KRTAP13-3Q3SY46 172 aa12.95□□□□□ -0.34
POLR2J3-220ENST00000613744 IGLV9-49A0A0B4J1Y8 123 aa12.95□□□□□ -0.34
POLR2J3-220ENST00000613744 ZNF706Q9Y5V0 76 aaPredicted RBP12.94□□□□□ -0.34
POLR2J3-220ENST00000613744 APOBP04114 4563 aaKnown RBP12.93□□□□□ -0.34
POLR2J3-220ENST00000613744 SPATA8Q6RVD6 105 aa12.91□□□□□ -0.34
POLR2J3-220ENST00000613744 DMAC1Q96GE9 116 aa12.9□□□□□ -0.34
POLR2J3-220ENST00000613744 SMR3BP02814 79 aaPredicted RBP12.88□□□□□ -0.35
POLR2J3-220ENST00000613744 LINC01554Q52M75 96 aa12.86□□□□□ -0.35
POLR2J3-220ENST00000613744 PRAC1Q96KF2 57 aa12.85□□□□□ -0.35
POLR2J3-220ENST00000613744 C4orf48Q5BLP8 95 aa12.85□□□□□ -0.35
POLR2J3-220ENST00000613744 A0A1B0GU69 56 aa12.84□□□□□ -0.35
POLR2J3-220ENST00000613744 NOTCH2NLQ7Z3S9 236 aa12.84□□□□□ -0.35
POLR2J3-220ENST00000613744 KIAA1109Q2LD37 5005 aa12.84□□□□□ -0.35
POLR2J3-220ENST00000613744 Q5W150 140 aa12.84□□□□□ -0.35
POLR2J3-220ENST00000613744 RYR1P21817 5038 aa12.8□□□□□ -0.36
POLR2J3-220ENST00000613744 BIRC6Q9NR09 4857 aa12.78□□□□□ -0.36
POLR2J3-220ENST00000613744 HSPG2P98160 4391 aa12.77□□□□□ -0.36
POLR2J3-220ENST00000613744 PSORS1C2Q9UIG4 136 aa12.77□□□□□ -0.36
POLR2J3-220ENST00000613744 UQCR11O14957 56 aa12.74□□□□□ -0.37
POLR2J3-220ENST00000613744 ADM2Q7Z4H4 148 aa12.74□□□□□ -0.37
POLR2J3-220ENST00000613744 FAT1Q14517 4588 aa12.74□□□□□ -0.37
POLR2J3-220ENST00000613744 MIR22HGQ0VDD5 57 aa12.73□□□□□ -0.37
POLR2J3-220ENST00000613744 KRTAP17-1Q9BYP8 105 aa12.73□□□□□ -0.37
POLR2J3-220ENST00000613744 VPS13BQ7Z7G8 4022 aa12.71□□□□□ -0.37
POLR2J3-220ENST00000613744 FAM229AH3BQW9 127 aa12.69□□□□□ -0.38
POLR2J3-220ENST00000613744 SRRM2Q9UQ35 2752 aaKnown RBP12.65□□□□□ -0.39
POLR2J3-220ENST00000613744 RETNLBQ9BQ08 111 aa12.64□□□□□ -0.39
POLR2J3-220ENST00000613744 IGKV2-30P06310 120 aa12.63□□□□□ -0.39
POLR2J3-220ENST00000613744 Q5VSD8 79 aa12.63□□□□□ -0.39
POLR2J3-220ENST00000613744 ZNF861PO60384 105 aa12.62□□□□□ -0.39
POLR2J3-220ENST00000613744 IGLV7-43P04211 117 aa12.61□□□□□ -0.39
POLR2J3-220ENST00000613744 SPINK6Q6UWN8 80 aa12.6□□□□□ -0.39
POLR2J3-220ENST00000613744 Q8N1X5 172 aa12.59□□□□□ -0.39
POLR2J3-220ENST00000613744 KRTAP10-4P60372 401 aaPredicted RBP12.58□□□□□ -0.4
POLR2J3-220ENST00000613744 KRTAP4-5Q9BYR2 181 aa12.52□□□□□ -0.4
POLR2J3-220ENST00000613744 ANAPC11Q9NYG5 84 aa12.52□□□□□ -0.41
POLR2J3-220ENST00000613744 SSBP3-AS1Q7Z2R9 100 aa12.5□□□□□ -0.41
POLR2J3-220ENST00000613744 HERC2O95714 4834 aa12.5□□□□□ -0.41
POLR2J3-220ENST00000613744 CSAG1Q6PB30 78 aa12.48□□□□□ -0.41
POLR2J3-220ENST00000613744 H3BS24 57 aa12.46□□□□□ -0.41
POLR2J3-220ENST00000613744 IGKV2D-30A0A075B6S6 120 aa12.38□□□□□ -0.43
POLR2J3-220ENST00000613744 KRTAP16-1A8MUX0 517 aa12.35□□□□□ -0.43
POLR2J3-220ENST00000613744 ABCA13Q86UQ4 5058 aa12.35□□□□□ -0.43
POLR2J3-220ENST00000613744 FLG2Q5D862 2391 aaPredicted RBP12.32□□□□□ -0.44
POLR2J3-220ENST00000613744 PKHD1L1Q86WI1 4243 aa12.32□□□□□ -0.44
POLR2J3-220ENST00000613744 KRTAP1-4P0C5Y4 121 aa12.28□□□□□ -0.44
POLR2J3-220ENST00000613744 LRP1Q07954 4544 aaKnown RBP12.28□□□□□ -0.44
POLR2J3-220ENST00000613744 MYCBP2O75592 4640 aa12.28□□□□□ -0.44
POLR2J3-220ENST00000613744 A8MUU9 505 aa12.19□□□□□ -0.46
POLR2J3-220ENST00000613744 KRTAP13-2Q52LG2 175 aa12.18□□□□□ -0.46
POLR2J3-220ENST00000613744 FAT3Q8TDW7 4589 aa12.18□□□□□ -0.46
POLR2J3-220ENST00000613744 PCLOQ9Y6V0 5065 aa12.17□□□□□ -0.46
POLR2J3-220ENST00000613744 KRTAP25-1Q3LHN0 102 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms