RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 DNAH8Q96JB1 4490 aa8.35□□□□□ -1.07
COL6A1-207ENST00000612273 MRPL34Q9BQ48 92 aaKnown RBP8.35□□□□□ -1.07
COL6A1-207ENST00000612273 V9GYY9 64 aa8.34□□□□□ -1.07
COL6A1-207ENST00000612273 IGLV7-46A0A075B6I9 117 aa8.34□□□□□ -1.08
COL6A1-207ENST00000612273 ZNF706Q9Y5V0 76 aaPredicted RBP8.33□□□□□ -1.08
COL6A1-207ENST00000612273 Q5W150 140 aa8.33□□□□□ -1.08
COL6A1-207ENST00000612273 PRR26Q8N8Z3 221 aa8.31□□□□□ -1.08
COL6A1-207ENST00000612273 LIMD2Q9BT23 127 aa8.31□□□□□ -1.08
COL6A1-207ENST00000612273 TP53AIP1Q9HCN2 124 aa8.31□□□□□ -1.08
COL6A1-207ENST00000612273 LINC00483Q53H64 154 aa8.3□□□□□ -1.08
COL6A1-207ENST00000612273 DNAH17Q9UFH2 4485 aa8.29□□□□□ -1.08
COL6A1-207ENST00000612273 DNAH2Q9P225 4427 aa8.29□□□□□ -1.08
COL6A1-207ENST00000612273 HRES1P13985 223 aa8.28□□□□□ -1.08
COL6A1-207ENST00000612273 C1orf134Q5TEV5 83 aa8.28□□□□□ -1.08
COL6A1-207ENST00000612273 VPS13DQ5THJ4 4388 aa8.27□□□□□ -1.09
COL6A1-207ENST00000612273 LCA10Q71F78 164 aa8.26□□□□□ -1.09
COL6A1-207ENST00000612273 HECTD4Q9Y4D8 3996 aa8.26□□□□□ -1.09
COL6A1-207ENST00000612273 IGLV7-43P04211 117 aa8.26□□□□□ -1.09
COL6A1-207ENST00000612273 PLAC8Q9NZF1 115 aa8.26□□□□□ -1.09
COL6A1-207ENST00000612273 DNAH6Q9C0G6 4158 aa8.24□□□□□ -1.09
COL6A1-207ENST00000612273 Q6ZR54 194 aa8.24□□□□□ -1.09
COL6A1-207ENST00000612273 KRTAP10-2P60368 255 aa8.24□□□□□ -1.09
COL6A1-207ENST00000612273 ASB16-AS1Q495Z4 193 aa8.24□□□□□ -1.09
COL6A1-207ENST00000612273 DNHD1Q96M86 4753 aa8.23□□□□□ -1.09
COL6A1-207ENST00000612273 DNAH11Q96DT5 4516 aa8.22□□□□□ -1.09
COL6A1-207ENST00000612273 SPINK7P58062 85 aa8.21□□□□□ -1.1
COL6A1-207ENST00000612273 LOC101927531A0A1B0GV80 90 aa8.2□□□□□ -1.1
COL6A1-207ENST00000612273 DYNC2H1Q8NCM8 4307 aaKnown RBP8.19□□□□□ -1.1
COL6A1-207ENST00000612273 SEC61GP60059 68 aa8.17□□□□□ -1.1
COL6A1-207ENST00000612273 Q75L30 129 aa8.16□□□□□ -1.1
COL6A1-207ENST00000612273 LINC00313P59037 77 aa8.16□□□□□ -1.1
COL6A1-207ENST00000612273 IGKV2D-30A0A075B6S6 120 aa8.14□□□□□ -1.11
COL6A1-207ENST00000612273 IGKV2-30P06310 120 aa8.14□□□□□ -1.11
COL6A1-207ENST00000612273 LRP1BQ9NZR2 4599 aa8.13□□□□□ -1.11
COL6A1-207ENST00000612273 LINC01558Q9Y6Z2 57 aa8.12□□□□□ -1.11
COL6A1-207ENST00000612273 KRTAP13-2Q52LG2 175 aa8.11□□□□□ -1.11
COL6A1-207ENST00000612273 KRTAP10-1P60331 282 aa8.09□□□□□ -1.11
COL6A1-207ENST00000612273 SSBP3-AS1Q7Z2R9 100 aa8.07□□□□□ -1.12
COL6A1-207ENST00000612273 ACYP2P14621 99 aa8.07□□□□□ -1.12
COL6A1-207ENST00000612273 CDC42SE1Q9NRR8 79 aa8.07□□□□□ -1.12
COL6A1-207ENST00000612273 SPINK1P00995 79 aa8.06□□□□□ -1.12
COL6A1-207ENST00000612273 ATP11AUNQ6ZP68 121 aa8.06□□□□□ -1.12
COL6A1-207ENST00000612273 KRTAP13-3Q3SY46 172 aa8.05□□□□□ -1.12
COL6A1-207ENST00000612273 ALMS1Q8TCU4 4167 aa8.04□□□□□ -1.12
COL6A1-207ENST00000612273 DNAH5Q8TE73 4624 aa8.03□□□□□ -1.12
COL6A1-207ENST00000612273 FAM229AH3BQW9 127 aa8.02□□□□□ -1.13
COL6A1-207ENST00000612273 PLA2G1BP04054 148 aaKnown RBP8.02□□□□□ -1.13
COL6A1-207ENST00000612273 C8orf87E5RJ46 101 aa8.01□□□□□ -1.13
COL6A1-207ENST00000612273 C4orf48Q5BLP8 95 aa8.01□□□□□ -1.13
COL6A1-207ENST00000612273 HYDINQ4G0P3 5121 aa8.01□□□□□ -1.13
COL6A1-207ENST00000612273 KTN1-AS1Q86SY8 53 aa8□□□□□ -1.13
COL6A1-207ENST00000612273 A0A1B0GU69 56 aa7.99□□□□□ -1.13
COL6A1-207ENST00000612273 SMR3BP02814 79 aaPredicted RBP7.98□□□□□ -1.13
COL6A1-207ENST00000612273 A6NN06 94 aa7.97□□□□□ -1.13
COL6A1-207ENST00000612273 Q8N1X5 172 aa7.97□□□□□ -1.13
COL6A1-207ENST00000612273 C7orf65Q6ZTY9 151 aa7.97□□□□□ -1.13
COL6A1-207ENST00000612273 TYMSOSQ8TAI1 123 aa7.96□□□□□ -1.13
COL6A1-207ENST00000612273 DMAC1Q96GE9 116 aa7.96□□□□□ -1.14
COL6A1-207ENST00000612273 VPS13BQ7Z7G8 4022 aa7.95□□□□□ -1.14
COL6A1-207ENST00000612273 PRAC1Q96KF2 57 aa7.94□□□□□ -1.14
COL6A1-207ENST00000612273 RBM12B-AS1Q9P1G2 102 aa7.93□□□□□ -1.14
COL6A1-207ENST00000612273 KRTAP1-4P0C5Y4 121 aa7.93□□□□□ -1.14
COL6A1-207ENST00000612273 FAT2Q9NYQ8 4349 aa7.91□□□□□ -1.14
COL6A1-207ENST00000612273 C9orf92A6NGG3 77 aa7.91□□□□□ -1.14
COL6A1-207ENST00000612273 ADM2Q7Z4H4 148 aa7.9□□□□□ -1.14
COL6A1-207ENST00000612273 KRTAP16-1A8MUX0 517 aa7.9□□□□□ -1.14
COL6A1-207ENST00000612273 PKHD1P08F94 4074 aa7.88□□□□□ -1.15
COL6A1-207ENST00000612273 Q6ZSA8 131 aa7.85□□□□□ -1.15
COL6A1-207ENST00000612273 FAT1Q14517 4588 aa7.84□□□□□ -1.16
COL6A1-207ENST00000612273 MIR22HGQ0VDD5 57 aa7.82□□□□□ -1.16
COL6A1-207ENST00000612273 FLG2Q5D862 2391 aaPredicted RBP7.8□□□□□ -1.16
COL6A1-207ENST00000612273 LINC00304Q8N9R0 145 aa7.8□□□□□ -1.16
COL6A1-207ENST00000612273 PKD1P98161 4303 aa7.79□□□□□ -1.16
COL6A1-207ENST00000612273 UQCR11O14957 56 aa7.79□□□□□ -1.16
COL6A1-207ENST00000612273 DMBT1Q9UGM3 2413 aaPredicted RBP7.77□□□□□ -1.17
COL6A1-207ENST00000612273 SPATA8Q6RVD6 105 aa7.7□□□□□ -1.18
COL6A1-207ENST00000612273 DYNC1H1Q14204 4646 aaKnown RBP7.65□□□□□ -1.19
COL6A1-207ENST00000612273 CSAG1Q6PB30 78 aa7.6□□□□□ -1.19
COL6A1-207ENST00000612273 SACSQ9NZJ4 4579 aa7.59□□□□□ -1.19
COL6A1-207ENST00000612273 MYCBP2O75592 4640 aa7.58□□□□□ -1.2
COL6A1-207ENST00000612273 KRTAP3-1Q9BYR8 98 aa7.57□□□□□ -1.2
COL6A1-207ENST00000612273 CRIPTQ9P021 101 aa7.54□□□□□ -1.2
COL6A1-207ENST00000612273 LRP1Q07954 4544 aaKnown RBP7.53□□□□□ -1.2
COL6A1-207ENST00000612273 H0YAA0 97 aa7.53□□□□□ -1.2
COL6A1-207ENST00000612273 A0A1B0GU33 70 aa7.51□□□□□ -1.21
COL6A1-207ENST00000612273 A8MUU9 505 aa7.49□□□□□ -1.21
COL6A1-207ENST00000612273 LINC01554Q52M75 96 aa7.49□□□□□ -1.21
COL6A1-207ENST00000612273 C20orf166-AS1Q96NR2 134 aa7.48□□□□□ -1.21
COL6A1-207ENST00000612273 APOBP04114 4563 aaKnown RBP7.47□□□□□ -1.21
COL6A1-207ENST00000612273 KMT2CQ8NEZ4 4911 aaKnown RBP7.45□□□□□ -1.22
COL6A1-207ENST00000612273 H3BS24 57 aa7.42□□□□□ -1.22
COL6A1-207ENST00000612273 RPS29P62273 56 aaKnown RBP7.42□□□□□ -1.22
COL6A1-207ENST00000612273 A0A0D9SG42 100 aa7.41□□□□□ -1.22
COL6A1-207ENST00000612273 H1FX-AS1Q4G0G2 97 aa7.41□□□□□ -1.22
COL6A1-207ENST00000612273 KRTAP10-4P60372 401 aaPredicted RBP7.4□□□□□ -1.22
COL6A1-207ENST00000612273 COX6B2Q6YFQ2 88 aa7.37□□□□□ -1.23
COL6A1-207ENST00000612273 A0A1B0GVY2 172 aa7.37□□□□□ -1.23
COL6A1-207ENST00000612273 HSPG2P98160 4391 aa7.35□□□□□ -1.23
COL6A1-207ENST00000612273 PKHD1L1Q86WI1 4243 aa7.33□□□□□ -1.24
COL6A1-207ENST00000612273 FAT3Q8TDW7 4589 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms