RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 S100A16Q96FQ6 103 aaKnown RBP2.06□□□□□ -2.08
LINC00540-201ENST00000611481 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 LINC00959A0A1B0GUT2 108 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 NDUFB6O95139 128 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 P0C880 135 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 IFITM1P13164 125 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 RPL37P61927 97 aaKnown RBP2.05□□□□□ -2.08
LINC00540-201ENST00000611481 SPAG11BQ08648 103 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 MIR22HGQ0VDD5 57 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 KRTAP13-1Q8IUC0 172 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 PSENENQ9NZ42 101 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 C22orf24Q9Y442 160 aa2.05□□□□□ -2.08
LINC00540-201ENST00000611481 SPINK8P0C7L1 97 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 IL7P13232 177 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 Q1T7F1 81 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 COL5A1-AS1Q5SY13 56 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 SPANXN1Q5VSR9 72 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 OR10AG1Q8NH19 301 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 FAM167A-AS1Q96KT0 104 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 TMEM242Q9NWH2 141 aa2.04□□□□□ -2.08
LINC00540-201ENST00000611481 MRPL35Q9NZE8 188 aaKnown RBP2.04□□□□□ -2.08
LINC00540-201ENST00000611481 NPC2P61916 151 aa2.03□□□□□ -2.08
LINC00540-201ENST00000611481 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.03□□□□□ -2.08
LINC00540-201ENST00000611481 C5orf17Q8NAS9 161 aa2.03□□□□□ -2.08
LINC00540-201ENST00000611481 SNHG12Q9BXW3 62 aa2.03□□□□□ -2.08
LINC00540-201ENST00000611481 C6orf48Q9UBA6 75 aa2.03□□□□□ -2.08
LINC00540-201ENST00000611481 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.02□□□□□ -2.09
LINC00540-201ENST00000611481 IGKV2-29A2NJV5 120 aaPredicted RBP2.02□□□□□ -2.09
LINC00540-201ENST00000611481 SDHAF1A6NFY7 115 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 NDUFA1O15239 70 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 SSSCA1O60232 199 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 SNCGO76070 127 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 RPS29P62273 56 aaKnown RBP2.02□□□□□ -2.09
LINC00540-201ENST00000611481 UBE2L3P68036 154 aaKnown RBP2.02□□□□□ -2.09
LINC00540-201ENST00000611481 PRLHP81277 87 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 UNQ6190/PRO20217Q6UXQ8 127 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 PPDPFLQ8WWR9 84 aa2.02□□□□□ -2.09
LINC00540-201ENST00000611481 PIGBOS1A0A0B4J2F0 54 aa2.01□□□□□ -2.09
LINC00540-201ENST00000611481 SLC25A6P12236 298 aa2.01□□□□□ -2.09
LINC00540-201ENST00000611481 COX7CP15954 63 aa2.01□□□□□ -2.09
LINC00540-201ENST00000611481 C5orf38Q86SI9 138 aa2.01□□□□□ -2.09
LINC00540-201ENST00000611481 ORMDL1Q9P0S3 153 aa2.01□□□□□ -2.09
LINC00540-201ENST00000611481 MPC2O95563 127 aa2□□□□□ -2.09
LINC00540-201ENST00000611481 FAM74A1Q5RGS3 127 aa2□□□□□ -2.09
LINC00540-201ENST00000611481 V9GYH0 126 aa2□□□□□ -2.09
LINC00540-201ENST00000611481 UBE2L5PA0A1B0GUS4 154 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 F8W1H4 67 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 M0QY20 66 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 MGPP08493 103 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 ATP5EP56381 51 aaPredicted RBP1.99□□□□□ -2.09
LINC00540-201ENST00000611481 Q5BKY6 102 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 C9orf62Q8N4C0 152 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 Q8N8P6 123 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 TMEM141Q96I45 108 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 SPRR4Q96PI1 79 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 SCP2D1Q9UJQ7 156 aa1.99□□□□□ -2.09
LINC00540-201ENST00000611481 Q86TA4 180 aa1.98□□□□□ -2.09
LINC00540-201ENST00000611481 TOMM5Q8N4H5 51 aa1.98□□□□□ -2.09
LINC00540-201ENST00000611481 SMIM4Q8WVI0 70 aa1.98□□□□□ -2.09
LINC00540-201ENST00000611481 DSCR8Q96T75 97 aa1.98□□□□□ -2.09
LINC00540-201ENST00000611481 NAP1L6A6NFF2 107 aa1.97□□□□□ -2.09
LINC00540-201ENST00000611481 H3BRM9 83 aa1.97□□□□□ -2.09
LINC00540-201ENST00000611481 MED9Q9NWA0 146 aa1.97□□□□□ -2.09
LINC00540-201ENST00000611481 AHNAKQ09666 5890 aaKnown RBP1.97□□□□□ -2.09
LINC00540-201ENST00000611481 FXYD6-FXYD2A0A087WZ82 144 aa1.96□□□□□ -2.1
LINC00540-201ENST00000611481 SFT2D2O95562 160 aa1.96□□□□□ -2.1
LINC00540-201ENST00000611481 APOC3P02656 99 aa1.96□□□□□ -2.1
LINC00540-201ENST00000611481 ARL14EPLP0DKL9 152 aa1.96□□□□□ -2.1
LINC00540-201ENST00000611481 FAUP35544 74 aaKnown RBP1.96□□□□□ -2.1
LINC00540-201ENST00000611481 SSBP1Q04837 148 aaKnown RBP1.96□□□□□ -2.1
LINC00540-201ENST00000611481 RPL7L1Q6DKI1 246 aaKnown RBP1.96□□□□□ -2.1
LINC00540-201ENST00000611481 TRBV30A0A0K0K1B3 111 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 KANTRA0A1W2PQU2 76 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 CRIP1P50238 77 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 S100A7L2Q5SY68 101 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 ALKAL2Q6UX46 152 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 CDC42SE2Q9NRR3 84 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 ARL2-SNX15V9GYD0 113 aa1.95□□□□□ -2.1
LINC00540-201ENST00000611481 TRBV10-3A0A0K0K1G6 114 aa1.94□□□□□ -2.1
LINC00540-201ENST00000611481 SSBP3-AS1Q7Z2R9 100 aa1.94□□□□□ -2.1
LINC00540-201ENST00000611481 SIX6O95475 246 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 IGKCP01834 107 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 UBE2G1P62253 170 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 RBM3P98179 157 aaKnown RBP1.93□□□□□ -2.1
LINC00540-201ENST00000611481 PEA15Q15121 130 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 CSAG1Q6PB30 78 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 COA5Q86WW8 74 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 DMAC1Q96GE9 116 aa1.93□□□□□ -2.1
LINC00540-201ENST00000611481 MT1BP07438 61 aa1.92□□□□□ -2.1
LINC00540-201ENST00000611481 KRTAP8-1Q8IUC2 63 aa1.92□□□□□ -2.1
LINC00540-201ENST00000611481 SMCO4Q9NRQ5 59 aa1.92□□□□□ -2.1
LINC00540-201ENST00000611481 CDC42SE1Q9NRR8 79 aa1.92□□□□□ -2.1
LINC00540-201ENST00000611481 TRBV6-5A0A0K0K1A5 114 aa1.91□□□□□ -2.1
LINC00540-201ENST00000611481 JMJD7-PLA2G4BH0Y9G9 81 aa1.91□□□□□ -2.1
LINC00540-201ENST00000611481 MT4P47944 62 aa1.91□□□□□ -2.1
LINC00540-201ENST00000611481 LIMD2Q9BT23 127 aa1.91□□□□□ -2.1
LINC00540-201ENST00000611481 VAMP8Q9BV40 100 aa1.91□□□□□ -2.1
LINC00540-201ENST00000611481 TRAV13-2A0A0B4J235 113 aa1.9□□□□□ -2.11
LINC00540-201ENST00000611481 MT-ATP8P03928 68 aa1.9□□□□□ -2.11
LINC00540-201ENST00000611481 SPTSSBQ8NFR3 76 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 395.2 ms