RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	LINC00472	Q9H8W2	130 aa		4.65	□□□□□ -1.67
SSBP4-208	ENST00000600628	C20orf166-AS1	Q96NR2	134 aa		4.64	□□□□□ -1.67
SSBP4-208	ENST00000600628	KRTAP9-2	Q9BYQ4	174 aa		4.64	□□□□□ -1.67
SSBP4-208	ENST00000600628		A8MUU9	505 aa		4.63	□□□□□ -1.67
SSBP4-208	ENST00000600628	MT-ATP8	P03928	68 aa		4.63	□□□□□ -1.67
SSBP4-208	ENST00000600628	OBSCN-AS1	Q96MR7	158 aa		4.63	□□□□□ -1.67
SSBP4-208	ENST00000600628	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.62	□□□□□ -1.67
SSBP4-208	ENST00000600628	LINC00643	Q86TS7	51 aa		4.62	□□□□□ -1.67
SSBP4-208	ENST00000600628	IMUP	Q9GZP8	106 aa		4.62	□□□□□ -1.67
SSBP4-208	ENST00000600628	KRTAP16-1	A8MUX0	517 aa		4.61	□□□□□ -1.67
SSBP4-208	ENST00000600628	CCK	P06307	115 aa		4.61	□□□□□ -1.67
SSBP4-208	ENST00000600628	RBM3	P98179	157 aa	Known RBP	4.61	□□□□□ -1.67
SSBP4-208	ENST00000600628	LOC110117498	A0A087WWA1	95 aa		4.59	□□□□□ -1.67
SSBP4-208	ENST00000600628	MT1H	P80294	61 aa		4.59	□□□□□ -1.67
SSBP4-208	ENST00000600628		A0A1B0GW54	56 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628	PDE6G	P18545	87 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628	ATP11AUN	Q6ZP68	121 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628		Q6ZQT0	140 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628	NOTCH2NL	Q7Z3S9	236 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628	ANAPC13	Q9BS18	74 aa		4.58	□□□□□ -1.68
SSBP4-208	ENST00000600628	DSCR8	Q96T75	97 aa		4.57	□□□□□ -1.68
SSBP4-208	ENST00000600628	IGKV4-1	P06312	121 aa		4.56	□□□□□ -1.68
SSBP4-208	ENST00000600628	ATP5EP2	Q5VTU8	51 aa		4.55	□□□□□ -1.68
SSBP4-208	ENST00000600628	C14orf132	Q9NPU4	83 aa		4.55	□□□□□ -1.68
SSBP4-208	ENST00000600628	DSCR10	P59022	87 aa		4.54	□□□□□ -1.68
SSBP4-208	ENST00000600628	LINC00313	P59037	77 aa		4.54	□□□□□ -1.68
SSBP4-208	ENST00000600628	DEFB116	Q30KQ4	102 aa		4.53	□□□□□ -1.68
SSBP4-208	ENST00000600628		A0A1B0GVX0	72 aa		4.52	□□□□□ -1.69
SSBP4-208	ENST00000600628		J3KT08	172 aa		4.52	□□□□□ -1.69
SSBP4-208	ENST00000600628	LOR	P23490	312 aa	Predicted RBP	4.52	□□□□□ -1.69
SSBP4-208	ENST00000600628	LCE2D	Q5TA82	110 aa	Predicted RBP	4.52	□□□□□ -1.69
SSBP4-208	ENST00000600628	COX6B2	Q6YFQ2	88 aa		4.52	□□□□□ -1.69
SSBP4-208	ENST00000600628	MPLKIP	Q8TAP9	179 aa		4.51	□□□□□ -1.69
SSBP4-208	ENST00000600628	UBL5	Q9BZL1	73 aa		4.51	□□□□□ -1.69
SSBP4-208	ENST00000600628	C8orf87	E5RJ46	101 aa		4.5	□□□□□ -1.69
SSBP4-208	ENST00000600628	ATOX1	O00244	68 aa		4.5	□□□□□ -1.69
SSBP4-208	ENST00000600628	LINC00846	Q9NV44	126 aa		4.5	□□□□□ -1.69
SSBP4-208	ENST00000600628	IGHV6-1	A0A0B4J1U7	121 aa		4.49	□□□□□ -1.69
SSBP4-208	ENST00000600628	FAM236A	A0A1B0GUQ0	79 aa		4.49	□□□□□ -1.69
SSBP4-208	ENST00000600628	FAM236B	A0A1B0GV22	79 aa		4.49	□□□□□ -1.69
SSBP4-208	ENST00000600628	KRTAP10-6	P60371	365 aa	Predicted RBP	4.49	□□□□□ -1.69
SSBP4-208	ENST00000600628		Q8N9P0	234 aa	Predicted RBP	4.49	□□□□□ -1.69
SSBP4-208	ENST00000600628	FSIP2	Q5CZC0	6907 aa		4.48	□□□□□ -1.69
SSBP4-208	ENST00000600628	KRTAP9-6	A0A140TA67	174 aa		4.48	□□□□□ -1.69
SSBP4-208	ENST00000600628		M0R2T5	61 aa		4.48	□□□□□ -1.69
SSBP4-208	ENST00000600628	IGKV3D-7	A0A0C4DH55	119 aa		4.47	□□□□□ -1.69
SSBP4-208	ENST00000600628		A8MWP4	228 aa		4.47	□□□□□ -1.69
SSBP4-208	ENST00000600628	HRES1	P13985	223 aa		4.46	□□□□□ -1.7
SSBP4-208	ENST00000600628	HIST1H4A	P62805	103 aa	Known RBP	4.46	□□□□□ -1.7
SSBP4-208	ENST00000600628	UQCRQ	O14949	82 aa		4.45	□□□□□ -1.7
SSBP4-208	ENST00000600628	CXCL6	P80162	114 aa		4.45	□□□□□ -1.7
SSBP4-208	ENST00000600628	PRR15	Q8IV56	129 aa		4.45	□□□□□ -1.7
SSBP4-208	ENST00000600628	C8orf17	Q9NRJ1	99 aa		4.45	□□□□□ -1.7
SSBP4-208	ENST00000600628	SMIM20	Q8N5G0	67 aa		4.44	□□□□□ -1.7
SSBP4-208	ENST00000600628	NDUFB1	O75438	58 aa		4.43	□□□□□ -1.7
SSBP4-208	ENST00000600628	COX7C	P15954	63 aa		4.43	□□□□□ -1.7
SSBP4-208	ENST00000600628	ZCCHC13	Q8WW36	166 aa	Known RBP	4.43	□□□□□ -1.7
SSBP4-208	ENST00000600628	MMP24-AS1	A0A0U1RRL7	71 aa		4.42	□□□□□ -1.7
SSBP4-208	ENST00000600628	CCDC179	H3BU77	68 aa		4.42	□□□□□ -1.7
SSBP4-208	ENST00000600628	NREP	Q16612	68 aa		4.42	□□□□□ -1.7
SSBP4-208	ENST00000600628		Q6ZVQ6	151 aa		4.42	□□□□□ -1.7
SSBP4-208	ENST00000600628	SERP2	Q8N6R1	65 aa		4.42	□□□□□ -1.7
SSBP4-208	ENST00000600628	TMEM254	Q8TBM7	123 aa		4.39	□□□□□ -1.71
SSBP4-208	ENST00000600628	KRTAP9-8	Q9BYQ0	159 aa		4.39	□□□□□ -1.71
SSBP4-208	ENST00000600628	CRCT1	Q9UGL9	99 aa		4.39	□□□□□ -1.71
SSBP4-208	ENST00000600628		K7EQZ3	153 aa		4.38	□□□□□ -1.71
SSBP4-208	ENST00000600628		A0A087WVE0	104 aa		4.37	□□□□□ -1.71
SSBP4-208	ENST00000600628	TRAV7	A0A075B6U4	112 aa		4.36	□□□□□ -1.71
SSBP4-208	ENST00000600628	SPINK7	P58062	85 aa		4.36	□□□□□ -1.71
SSBP4-208	ENST00000600628	MRPL34	Q9BQ48	92 aa	Known RBP	4.36	□□□□□ -1.71
SSBP4-208	ENST00000600628	RBM12B-AS1	Q9P1G2	102 aa		4.36	□□□□□ -1.71
SSBP4-208	ENST00000600628	FAM236D	A0A1B0GTK5	79 aa		4.35	□□□□□ -1.71
SSBP4-208	ENST00000600628	hDV103S1	A0JD37	113 aa		4.35	□□□□□ -1.71
SSBP4-208	ENST00000600628	BPY2	O14599	106 aa		4.35	□□□□□ -1.71
SSBP4-208	ENST00000600628	FAM236C	P0DP71	79 aa		4.35	□□□□□ -1.71
SSBP4-208	ENST00000600628	TMEM258	P61165	79 aa		4.34	□□□□□ -1.71
SSBP4-208	ENST00000600628		Q5W150	140 aa		4.32	□□□□□ -1.72
SSBP4-208	ENST00000600628		Q8N9L7	120 aa		4.32	□□□□□ -1.72
SSBP4-208	ENST00000600628	NDUFC1	O43677	76 aa		4.31	□□□□□ -1.72
SSBP4-208	ENST00000600628	MT2A	P02795	61 aa		4.3	□□□□□ -1.72
SSBP4-208	ENST00000600628	USH2A	O75445	5202 aa		4.29	□□□□□ -1.72
SSBP4-208	ENST00000600628	RPS28	P62857	69 aa	Known RBP	4.29	□□□□□ -1.72
SSBP4-208	ENST00000600628	KLKP1	Q107X0	134 aa		4.28	□□□□□ -1.72
SSBP4-208	ENST00000600628	CASC2	Q6XLA1	102 aa		4.28	□□□□□ -1.72
SSBP4-208	ENST00000600628	WFDC13	Q8IUB5	93 aa		4.28	□□□□□ -1.72
SSBP4-208	ENST00000600628	C20orf197	Q8N268	126 aa		4.28	□□□□□ -1.72
SSBP4-208	ENST00000600628	MT1F	P04733	61 aa		4.26	□□□□□ -1.73
SSBP4-208	ENST00000600628	ATP5E	P56381	51 aa	Predicted RBP	4.26	□□□□□ -1.73
SSBP4-208	ENST00000600628	KRTAP9-3	Q9BYQ3	159 aa		4.26	□□□□□ -1.73
SSBP4-208	ENST00000600628	HCG22	E2RYF7	251 aa		4.25	□□□□□ -1.73
SSBP4-208	ENST00000600628	NDUFS5	O43920	106 aa		4.24	□□□□□ -1.73
SSBP4-208	ENST00000600628	OCR1	Q9BZK8	76 aa		4.24	□□□□□ -1.73
SSBP4-208	ENST00000600628	SSPO	A2VEC9	5147 aa		4.23	□□□□□ -1.73
SSBP4-208	ENST00000600628	C7orf65	Q6ZTY9	151 aa		4.23	□□□□□ -1.73
SSBP4-208	ENST00000600628		H7BZZ5	65 aa		4.21	□□□□□ -1.74
SSBP4-208	ENST00000600628	LCE2B	O14633	110 aa		4.21	□□□□□ -1.74
SSBP4-208	ENST00000600628	KRTAP10-10	P60014	251 aa		4.21	□□□□□ -1.74
SSBP4-208	ENST00000600628	H1FX-AS1	Q4G0G2	97 aa		4.21	□□□□□ -1.74
SSBP4-208	ENST00000600628	C5orf47	Q569G3	176 aa		4.21	□□□□□ -1.74
SSBP4-208	ENST00000600628	KRTAP3-1	Q9BYR8	98 aa		4.2	□□□□□ -1.74

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