RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 JMJD7-PLA2G4BH0Y9G9 81 aa9.85□□□□□ -0.83
PNKP-213ENST00000599543 Q6ZQT0 140 aa9.85□□□□□ -0.83
PNKP-213ENST00000599543 ATP11AUNQ6ZP68 121 aa9.84□□□□□ -0.83
PNKP-213ENST00000599543 IGKV4-1P06312 121 aa9.83□□□□□ -0.84
PNKP-213ENST00000599543 H3BT86 120 aa9.82□□□□□ -0.84
PNKP-213ENST00000599543 Q75L30 129 aa9.82□□□□□ -0.84
PNKP-213ENST00000599543 LOC110117498A0A087WWA1 95 aa9.81□□□□□ -0.84
PNKP-213ENST00000599543 LINC00472Q9H8W2 130 aa9.81□□□□□ -0.84
PNKP-213ENST00000599543 DSCR10P59022 87 aa9.8□□□□□ -0.84
PNKP-213ENST00000599543 SMCPP49901 116 aaPredicted RBP9.79□□□□□ -0.84
PNKP-213ENST00000599543 K7EP34 96 aa9.77□□□□□ -0.85
PNKP-213ENST00000599543 NOTCH2NLQ7Z3S9 236 aa9.74□□□□□ -0.85
PNKP-213ENST00000599543 PDE6GP18545 87 aa9.73□□□□□ -0.85
PNKP-213ENST00000599543 PRO0461Q9UI25 63 aa9.73□□□□□ -0.85
PNKP-213ENST00000599543 IGHV6-1A0A0B4J1U7 121 aa9.71□□□□□ -0.86
PNKP-213ENST00000599543 LINC00313P59037 77 aa9.68□□□□□ -0.86
PNKP-213ENST00000599543 C20orf166-AS1Q96NR2 134 aa9.68□□□□□ -0.86
PNKP-213ENST00000599543 C21orf62-AS1Q17RA5 79 aa9.66□□□□□ -0.86
PNKP-213ENST00000599543 A0A1B0GVX0 72 aa9.65□□□□□ -0.86
PNKP-213ENST00000599543 GTF2H5Q6ZYL4 71 aa9.65□□□□□ -0.86
PNKP-213ENST00000599543 A8MUU9 505 aa9.64□□□□□ -0.87
PNKP-213ENST00000599543 KRTAP16-1A8MUX0 517 aa9.64□□□□□ -0.87
PNKP-213ENST00000599543 NREPQ16612 68 aa9.64□□□□□ -0.87
PNKP-213ENST00000599543 A0A1B0GW54 56 aa9.63□□□□□ -0.87
PNKP-213ENST00000599543 J3KT08 172 aa9.62□□□□□ -0.87
PNKP-213ENST00000599543 IGKV3D-7A0A0C4DH55 119 aa9.58□□□□□ -0.88
PNKP-213ENST00000599543 A8MWP4 228 aa9.56□□□□□ -0.88
PNKP-213ENST00000599543 C8orf87E5RJ46 101 aa9.56□□□□□ -0.88
PNKP-213ENST00000599543 NDUFB1O75438 58 aa9.56□□□□□ -0.88
PNKP-213ENST00000599543 F8W1H4 67 aa9.54□□□□□ -0.88
PNKP-213ENST00000599543 ETDBQ3ZM63 59 aa9.54□□□□□ -0.88
PNKP-213ENST00000599543 Q6ZVQ6 151 aa9.53□□□□□ -0.88
PNKP-213ENST00000599543 C8orf17Q9NRJ1 99 aa9.53□□□□□ -0.88
PNKP-213ENST00000599543 PRR15Q8IV56 129 aa9.5□□□□□ -0.89
PNKP-213ENST00000599543 LINC00846Q9NV44 126 aa9.5□□□□□ -0.89
PNKP-213ENST00000599543 K7EQZ3 153 aa9.49□□□□□ -0.89
PNKP-213ENST00000599543 BPY2O14599 106 aa9.49□□□□□ -0.89
PNKP-213ENST00000599543 Q8N9L7 120 aa9.48□□□□□ -0.89
PNKP-213ENST00000599543 FAM236DA0A1B0GTK5 79 aa9.47□□□□□ -0.89
PNKP-213ENST00000599543 A0A1B0GV90 55 aa9.47□□□□□ -0.89
PNKP-213ENST00000599543 FAM236CP0DP71 79 aa9.47□□□□□ -0.89
PNKP-213ENST00000599543 KRTAP9-8Q9BYQ0 159 aa9.46□□□□□ -0.9
PNKP-213ENST00000599543 MMP24-AS1A0A0U1RRL7 71 aa9.45□□□□□ -0.9
PNKP-213ENST00000599543 UBL5Q9BZL1 73 aa9.42□□□□□ -0.9
PNKP-213ENST00000599543 RBM12B-AS1Q9P1G2 102 aa9.41□□□□□ -0.9
PNKP-213ENST00000599543 Q8N9P0 234 aaPredicted RBP9.39□□□□□ -0.91
PNKP-213ENST00000599543 ZCCHC13Q8WW36 166 aaKnown RBP9.38□□□□□ -0.91
PNKP-213ENST00000599543 WFDC13Q8IUB5 93 aa9.37□□□□□ -0.91
PNKP-213ENST00000599543 hDV103S1A0JD37 113 aa9.36□□□□□ -0.91
PNKP-213ENST00000599543 HRES1P13985 223 aa9.36□□□□□ -0.91
PNKP-213ENST00000599543 TMEM254Q8TBM7 123 aa9.36□□□□□ -0.91
PNKP-213ENST00000599543 MRPL34Q9BQ48 92 aaKnown RBP9.36□□□□□ -0.91
PNKP-213ENST00000599543 MPLKIPQ8TAP9 179 aa9.35□□□□□ -0.91
PNKP-213ENST00000599543 USH2AO75445 5202 aa9.35□□□□□ -0.91
PNKP-213ENST00000599543 NDUFS5O43920 106 aa9.33□□□□□ -0.92
PNKP-213ENST00000599543 MT2AP02795 61 aa9.32□□□□□ -0.92
PNKP-213ENST00000599543 SSPOA2VEC9 5147 aa9.32□□□□□ -0.92
PNKP-213ENST00000599543 CASC2Q6XLA1 102 aa9.3□□□□□ -0.92
PNKP-213ENST00000599543 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.25□□□□□ -0.93
PNKP-213ENST00000599543 MT1FP04733 61 aa9.25□□□□□ -0.93
PNKP-213ENST00000599543 SPINK7P58062 85 aa9.25□□□□□ -0.93
PNKP-213ENST00000599543 HCG22E2RYF7 251 aa9.24□□□□□ -0.93
PNKP-213ENST00000599543 KRTAP10-10P60014 251 aa9.23□□□□□ -0.93
PNKP-213ENST00000599543 CXCL6P80162 114 aa9.21□□□□□ -0.94
PNKP-213ENST00000599543 Q5W150 140 aa9.21□□□□□ -0.94
PNKP-213ENST00000599543 KRTAP9-7A8MTY7 169 aa9.2□□□□□ -0.94
PNKP-213ENST00000599543 ACYP1P07311 99 aa9.2□□□□□ -0.94
PNKP-213ENST00000599543 FAM240AA0A1B0GVK7 77 aa9.18□□□□□ -0.94
PNKP-213ENST00000599543 LCE2BO14633 110 aa9.17□□□□□ -0.94
PNKP-213ENST00000599543 KRTAP9-3Q9BYQ3 159 aa9.17□□□□□ -0.94
PNKP-213ENST00000599543 FCGBPQ9Y6R7 5405 aaPredicted RBP9.14□□□□□ -0.95
PNKP-213ENST00000599543 IGKV2D-30A0A075B6S6 120 aa9.13□□□□□ -0.95
PNKP-213ENST00000599543 IGKV2-30P06310 120 aa9.13□□□□□ -0.95
PNKP-213ENST00000599543 KRTAP19-1Q8IUB9 90 aa9.11□□□□□ -0.95
PNKP-213ENST00000599543 HIST1H4AP62805 103 aaKnown RBP9.08□□□□□ -0.96
PNKP-213ENST00000599543 ATP5EP2Q5VTU8 51 aa9.06□□□□□ -0.96
PNKP-213ENST00000599543 C7orf65Q6ZTY9 151 aa9.04□□□□□ -0.96
PNKP-213ENST00000599543 LINC00643Q86TS7 51 aa9.04□□□□□ -0.96
PNKP-213ENST00000599543 A0A087WVE0 104 aa9.03□□□□□ -0.96
PNKP-213ENST00000599543 MACF1Q9UPN3 7388 aaKnown RBP9□□□□□ -0.97
PNKP-213ENST00000599543 J3QR89 54 aa8.97□□□□□ -0.97
PNKP-213ENST00000599543 TP53AIP1Q9HCN2 124 aa8.97□□□□□ -0.97
PNKP-213ENST00000599543 SYNE2Q8WXH0 6885 aaKnown RBP8.96□□□□□ -0.98
PNKP-213ENST00000599543 C4orf26Q17RF5 130 aa8.94□□□□□ -0.98
PNKP-213ENST00000599543 KRTAP19-6Q3LI70 58 aa8.89□□□□□ -0.99
PNKP-213ENST00000599543 H1FX-AS1Q4G0G2 97 aa8.89□□□□□ -0.99
PNKP-213ENST00000599543 TRAV22A0A0B4J277 110 aa8.86□□□□□ -0.99
PNKP-213ENST00000599543 H0Y9P7 68 aa8.82□□□□□ -1
PNKP-213ENST00000599543 UQCRQO14949 82 aa8.82□□□□□ -1
PNKP-213ENST00000599543 CYP4F30PQ9H0H9 118 aa8.81□□□□□ -1
PNKP-213ENST00000599543 KRTAP3-1Q9BYR8 98 aa8.8□□□□□ -1
PNKP-213ENST00000599543 K7ERU9 68 aa8.79□□□□□ -1
PNKP-213ENST00000599543 C1orf64Q8NEQ6 169 aa8.78□□□□□ -1
PNKP-213ENST00000599543 MT-ATP8P03928 68 aa8.77□□□□□ -1.01
PNKP-213ENST00000599543 LOC101927531A0A1B0GV80 90 aa8.76□□□□□ -1.01
PNKP-213ENST00000599543 OCR1Q9BZK8 76 aa8.75□□□□□ -1.01
PNKP-213ENST00000599543 LINC00208Q96KT6 92 aa8.71□□□□□ -1.02
PNKP-213ENST00000599543 ATOX1O00244 68 aa8.7□□□□□ -1.02
PNKP-213ENST00000599543 SCGB1A1P11684 91 aa8.69□□□□□ -1.02
PNKP-213ENST00000599543 C5orf47Q569G3 176 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms