RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 C8orf87E5RJ46 101 aa7.82□□□□□ -1.16
VRK3-209ENST00000594948 NOTCH2NLQ7Z3S9 236 aa7.82□□□□□ -1.16
VRK3-209ENST00000594948 COL7A1Q02388 2944 aa7.81□□□□□ -1.16
VRK3-209ENST00000594948 SPAG11AQ6PDA7 123 aa7.81□□□□□ -1.16
VRK3-209ENST00000594948 KTN1-AS1Q86SY8 53 aa7.8□□□□□ -1.16
VRK3-209ENST00000594948 DNAH7Q8WXX0 4024 aa7.79□□□□□ -1.16
VRK3-209ENST00000594948 PLECQ15149 4684 aaKnown RBP7.79□□□□□ -1.16
VRK3-209ENST00000594948 SSBP3-AS1Q7Z2R9 100 aa7.78□□□□□ -1.16
VRK3-209ENST00000594948 A6NN06 94 aa7.78□□□□□ -1.16
VRK3-209ENST00000594948 IGLV7-43P04211 117 aa7.78□□□□□ -1.16
VRK3-209ENST00000594948 ANAPC11Q9NYG5 84 aa7.78□□□□□ -1.16
VRK3-209ENST00000594948 VPS13DQ5THJ4 4388 aa7.77□□□□□ -1.17
VRK3-209ENST00000594948 Q5W150 140 aa7.77□□□□□ -1.17
VRK3-209ENST00000594948 SPTSSBQ8NFR3 76 aa7.77□□□□□ -1.17
VRK3-209ENST00000594948 ACYP2P14621 99 aa7.75□□□□□ -1.17
VRK3-209ENST00000594948 CSMD3Q7Z407 3707 aa7.75□□□□□ -1.17
VRK3-209ENST00000594948 SPINK6Q6UWN8 80 aa7.73□□□□□ -1.17
VRK3-209ENST00000594948 DNAH17Q9UFH2 4485 aa7.73□□□□□ -1.17
VRK3-209ENST00000594948 MGAM2Q2M2H8 2515 aa7.73□□□□□ -1.17
VRK3-209ENST00000594948 DNAH8Q96JB1 4490 aa7.72□□□□□ -1.17
VRK3-209ENST00000594948 HECTD4Q9Y4D8 3996 aa7.72□□□□□ -1.17
VRK3-209ENST00000594948 CIRBP-AS1Q8TBR5 109 aa7.71□□□□□ -1.17
VRK3-209ENST00000594948 DMAC1Q96GE9 116 aa7.71□□□□□ -1.17
VRK3-209ENST00000594948 SPINK7P58062 85 aa7.71□□□□□ -1.18
VRK3-209ENST00000594948 ALMS1Q8TCU4 4167 aa7.7□□□□□ -1.18
VRK3-209ENST00000594948 FAM229AH3BQW9 127 aa7.7□□□□□ -1.18
VRK3-209ENST00000594948 PRR26Q8N8Z3 221 aa7.68□□□□□ -1.18
VRK3-209ENST00000594948 LINC00313P59037 77 aa7.68□□□□□ -1.18
VRK3-209ENST00000594948 C1orf134Q5TEV5 83 aa7.66□□□□□ -1.18
VRK3-209ENST00000594948 IGKV2-30P06310 120 aa7.65□□□□□ -1.18
VRK3-209ENST00000594948 C7orf65Q6ZTY9 151 aa7.65□□□□□ -1.18
VRK3-209ENST00000594948 STARD9Q9P2P6 4700 aa7.64□□□□□ -1.19
VRK3-209ENST00000594948 PRKDCP78527 4128 aaKnown RBP7.62□□□□□ -1.19
VRK3-209ENST00000594948 RBM12B-AS1Q9P1G2 102 aa7.6□□□□□ -1.19
VRK3-209ENST00000594948 KRTAP16-1A8MUX0 517 aa7.59□□□□□ -1.19
VRK3-209ENST00000594948 KRTAP13-2Q52LG2 175 aa7.57□□□□□ -1.2
VRK3-209ENST00000594948 DNAH2Q9P225 4427 aa7.57□□□□□ -1.2
VRK3-209ENST00000594948 A0A1B0GU69 56 aa7.56□□□□□ -1.2
VRK3-209ENST00000594948 KRTAP21-3Q3LHN1 58 aa7.56□□□□□ -1.2
VRK3-209ENST00000594948 FRAS1Q86XX4 4008 aa7.55□□□□□ -1.2
VRK3-209ENST00000594948 FBN3Q75N90 2809 aa7.55□□□□□ -1.2
VRK3-209ENST00000594948 DNAH6Q9C0G6 4158 aa7.54□□□□□ -1.2
VRK3-209ENST00000594948 SPATA8Q6RVD6 105 aa7.53□□□□□ -1.2
VRK3-209ENST00000594948 Q6ZSA8 131 aa7.52□□□□□ -1.2
VRK3-209ENST00000594948 RETNLBQ9BQ08 111 aa7.5□□□□□ -1.21
VRK3-209ENST00000594948 KRTAP10-2P60368 255 aa7.48□□□□□ -1.21
VRK3-209ENST00000594948 IGKV2D-30A0A075B6S6 120 aa7.48□□□□□ -1.21
VRK3-209ENST00000594948 LY6G6CO95867 125 aa7.48□□□□□ -1.21
VRK3-209ENST00000594948 KRTAP1-4P0C5Y4 121 aa7.48□□□□□ -1.21
VRK3-209ENST00000594948 KMT2AQ03164 3969 aa7.47□□□□□ -1.21
VRK3-209ENST00000594948 UQCR11O14957 56 aa7.47□□□□□ -1.21
VRK3-209ENST00000594948 MEGF8Q7Z7M0 2845 aa7.46□□□□□ -1.21
VRK3-209ENST00000594948 PLA2G1BP04054 148 aaKnown RBP7.46□□□□□ -1.21
VRK3-209ENST00000594948 MIR22HGQ0VDD5 57 aa7.45□□□□□ -1.22
VRK3-209ENST00000594948 DNAH5Q8TE73 4624 aa7.43□□□□□ -1.22
VRK3-209ENST00000594948 DNAH11Q96DT5 4516 aa7.43□□□□□ -1.22
VRK3-209ENST00000594948 SPINK1P00995 79 aa7.42□□□□□ -1.22
VRK3-209ENST00000594948 KRTAP10-1P60331 282 aa7.42□□□□□ -1.22
VRK3-209ENST00000594948 C4orf48Q5BLP8 95 aa7.42□□□□□ -1.22
VRK3-209ENST00000594948 RPS29P62273 56 aaKnown RBP7.39□□□□□ -1.23
VRK3-209ENST00000594948 DNHD1Q96M86 4753 aa7.38□□□□□ -1.23
VRK3-209ENST00000594948 TYMSOSQ8TAI1 123 aa7.38□□□□□ -1.23
VRK3-209ENST00000594948 TGP01266 2768 aa7.36□□□□□ -1.23
VRK3-209ENST00000594948 PRAC1Q96KF2 57 aa7.31□□□□□ -1.24
VRK3-209ENST00000594948 PKD1P98161 4303 aa7.31□□□□□ -1.24
VRK3-209ENST00000594948 LINC00304Q8N9R0 145 aa7.29□□□□□ -1.24
VRK3-209ENST00000594948 LRP1BQ9NZR2 4599 aa7.27□□□□□ -1.24
VRK3-209ENST00000594948 ADM2Q7Z4H4 148 aa7.27□□□□□ -1.25
VRK3-209ENST00000594948 Q8N1X5 172 aa7.25□□□□□ -1.25
VRK3-209ENST00000594948 A8MUU9 505 aa7.23□□□□□ -1.25
VRK3-209ENST00000594948 C20orf166-AS1Q96NR2 134 aa7.23□□□□□ -1.25
VRK3-209ENST00000594948 SACSQ9NZJ4 4579 aa7.23□□□□□ -1.25
VRK3-209ENST00000594948 LINC01554Q52M75 96 aa7.22□□□□□ -1.25
VRK3-209ENST00000594948 FAT2Q9NYQ8 4349 aa7.2□□□□□ -1.26
VRK3-209ENST00000594948 VPS13BQ7Z7G8 4022 aa7.19□□□□□ -1.26
VRK3-209ENST00000594948 H0YAA0 97 aa7.14□□□□□ -1.27
VRK3-209ENST00000594948 CSAG1Q6PB30 78 aa7.13□□□□□ -1.27
VRK3-209ENST00000594948 KRTAP3-1Q9BYR8 98 aa7.13□□□□□ -1.27
VRK3-209ENST00000594948 A0A1B0GU33 70 aa7.11□□□□□ -1.27
VRK3-209ENST00000594948 HYDINQ4G0P3 5121 aa7.1□□□□□ -1.27
VRK3-209ENST00000594948 H1FX-AS1Q4G0G2 97 aa7.1□□□□□ -1.27
VRK3-209ENST00000594948 C9orf92A6NGG3 77 aa7.08□□□□□ -1.28
VRK3-209ENST00000594948 PKHD1L1Q86WI1 4243 aa7.06□□□□□ -1.28
VRK3-209ENST00000594948 COX6B2Q6YFQ2 88 aa7.04□□□□□ -1.28
VRK3-209ENST00000594948 KRTAP10-4P60372 401 aaPredicted RBP7.04□□□□□ -1.28
VRK3-209ENST00000594948 SMR3BP02814 79 aaPredicted RBP6.99□□□□□ -1.29
VRK3-209ENST00000594948 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
VRK3-209ENST00000594948 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
VRK3-209ENST00000594948 A0A1B0GVY2 172 aa6.97□□□□□ -1.29
VRK3-209ENST00000594948 K7ERS5 55 aa6.97□□□□□ -1.29
VRK3-209ENST00000594948 PKHD1P08F94 4074 aa6.95□□□□□ -1.3
VRK3-209ENST00000594948 DYNC1H1Q14204 4646 aaKnown RBP6.93□□□□□ -1.3
VRK3-209ENST00000594948 FLG2Q5D862 2391 aaPredicted RBP6.85□□□□□ -1.31
VRK3-209ENST00000594948 KRTAP10-6P60371 365 aaPredicted RBP6.83□□□□□ -1.32
VRK3-209ENST00000594948 RPL37P61927 97 aaKnown RBP6.83□□□□□ -1.32
VRK3-209ENST00000594948 KRTAP3-3Q9BYR6 98 aa6.83□□□□□ -1.32
VRK3-209ENST00000594948 ROMO1P60602 79 aa6.81□□□□□ -1.32
VRK3-209ENST00000594948 KRTAP10-8P60410 259 aa6.8□□□□□ -1.32
VRK3-209ENST00000594948 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
VRK3-209ENST00000594948 S4R3F8 94 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms