RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 CHTF8P0CG12 524 aa2.19□□□□□ -2.06
VMP1-216ENST00000592790 RTL8CO15255 209 aa2.19□□□□□ -2.06
VMP1-216ENST00000592790 PRAC1Q96KF2 57 aa2.19□□□□□ -2.06
VMP1-216ENST00000592790 APLNQ9ULZ1 77 aa2.19□□□□□ -2.06
VMP1-216ENST00000592790 LOC100996750A0A140TA64 210 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 KRTAP4-6Q9BYQ5 205 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 COX6B2Q6YFQ2 88 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 TACC2O95359 2948 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 K7EIL1 84 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 MIR22HGQ0VDD5 57 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 LINC00483Q53H64 154 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.18□□□□□ -2.06
VMP1-216ENST00000592790 DNAH8Q96JB1 4490 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 A0A0G2JQZ4 141 aa2.18□□□□□ -2.06
VMP1-216ENST00000592790 SEC61BP60468 96 aaKnown RBP2.17□□□□□ -2.06
VMP1-216ENST00000592790 SPACA4Q8TDM5 124 aa2.17□□□□□ -2.06
VMP1-216ENST00000592790 A0A087WTM6 91 aa2.17□□□□□ -2.06
VMP1-216ENST00000592790 DNHD1Q96M86 4753 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 IGKV2D-30A0A075B6S6 120 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 IGLV7-43P04211 117 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 IGKV2-30P06310 120 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 HRES1P13985 223 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 DNAH10Q8IVF4 4471 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 PSORS1C2Q9UIG4 136 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 FBN2P35556 2912 aa2.16□□□□□ -2.06
VMP1-216ENST00000592790 FBN1P35555 2871 aaKnown RBP2.15□□□□□ -2.06
VMP1-216ENST00000592790 HUWE1Q7Z6Z7 4374 aaKnown RBP2.15□□□□□ -2.06
VMP1-216ENST00000592790 PLAC8Q9NZF1 115 aa2.15□□□□□ -2.06
VMP1-216ENST00000592790 TNXBP22105 4242 aa2.15□□□□□ -2.07
VMP1-216ENST00000592790 CHD6Q8TD26 2715 aa2.15□□□□□ -2.07
VMP1-216ENST00000592790 DMAC1Q96GE9 116 aa2.15□□□□□ -2.07
VMP1-216ENST00000592790 M0R2T5 61 aa2.14□□□□□ -2.07
VMP1-216ENST00000592790 KRTAP7-1Q8IUC3 87 aa2.14□□□□□ -2.07
VMP1-216ENST00000592790 DNAH11Q96DT5 4516 aa2.13□□□□□ -2.07
VMP1-216ENST00000592790 TYMSOSQ8TAI1 123 aa2.13□□□□□ -2.07
VMP1-216ENST00000592790 SPINK1P00995 79 aa2.13□□□□□ -2.07
VMP1-216ENST00000592790 USP24Q9UPU5 2620 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 KRTAP13-1Q8IUC0 172 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 SPINK7P58062 85 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 Q96NJ1 140 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 TENM4Q6N022 2769 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 UBR5O95071 2799 aaPredicted RBP2.12□□□□□ -2.07
VMP1-216ENST00000592790 LINC01554Q52M75 96 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 Q5W150 140 aa2.12□□□□□ -2.07
VMP1-216ENST00000592790 KRTAP1-5Q9BYS1 174 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 CFAP46Q8IYW2 2715 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 TEX15Q9BXT5 2789 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 KRTAP23-1A1A580 65 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 SPATA8Q6RVD6 105 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 SACSQ9NZJ4 4579 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 MYCBP2O75592 4640 aa2.11□□□□□ -2.07
VMP1-216ENST00000592790 GCN1Q92616 2671 aaKnown RBP2.1□□□□□ -2.07
VMP1-216ENST00000592790 IGSF10Q6WRI0 2623 aa2.1□□□□□ -2.07
VMP1-216ENST00000592790 HSPG2P98160 4391 aa2.09□□□□□ -2.07
VMP1-216ENST00000592790 LINC00304Q8N9R0 145 aa2.09□□□□□ -2.07
VMP1-216ENST00000592790 ANAPC11Q9NYG5 84 aa2.09□□□□□ -2.08
VMP1-216ENST00000592790 MAP1AP78559 2803 aaPredicted RBP2.09□□□□□ -2.08
VMP1-216ENST00000592790 PDZD2O15018 2839 aa2.08□□□□□ -2.08
VMP1-216ENST00000592790 HYDINQ4G0P3 5121 aa2.08□□□□□ -2.08
VMP1-216ENST00000592790 OTOGQ6ZRI0 2925 aa2.07□□□□□ -2.08
VMP1-216ENST00000592790 Q5VSD8 79 aa2.07□□□□□ -2.08
VMP1-216ENST00000592790 Q6ZRN7 208 aaPredicted RBP2.07□□□□□ -2.08
VMP1-216ENST00000592790 A0A1B0GU33 70 aa2.07□□□□□ -2.08
VMP1-216ENST00000592790 RPS29P62273 56 aaKnown RBP2.07□□□□□ -2.08
VMP1-216ENST00000592790 UTP20O75691 2785 aaKnown RBP2.07□□□□□ -2.08
VMP1-216ENST00000592790 KRTAP11-1Q8IUC1 163 aa2.07□□□□□ -2.08
VMP1-216ENST00000592790 KRTAP21-3Q3LHN1 58 aa2.06□□□□□ -2.08
VMP1-216ENST00000592790 NIPBLQ6KC79 2804 aaeCLIP2.06□□□□□ -2.08
VMP1-216ENST00000592790 CENPEQ02224 2701 aa2.06□□□□□ -2.08
VMP1-216ENST00000592790 FLNCQ14315 2725 aa2.06□□□□□ -2.08
VMP1-216ENST00000592790 STARD9Q9P2P6 4700 aa2.05□□□□□ -2.08
VMP1-216ENST00000592790 PANO1I0J062 215 aa2.05□□□□□ -2.08
VMP1-216ENST00000592790 A8MU10 97 aa2.04□□□□□ -2.08
VMP1-216ENST00000592790 NBEAL2Q6ZNJ1 2754 aa2.04□□□□□ -2.08
VMP1-216ENST00000592790 Q8N1X5 172 aa2.04□□□□□ -2.08
VMP1-216ENST00000592790 DNAH5Q8TE73 4624 aa2.03□□□□□ -2.08
VMP1-216ENST00000592790 CSAG1Q6PB30 78 aa2.03□□□□□ -2.08
VMP1-216ENST00000592790 CRIPTQ9P021 101 aa2.03□□□□□ -2.08
VMP1-216ENST00000592790 RYR3Q15413 4870 aa2.03□□□□□ -2.08
VMP1-216ENST00000592790 APCP25054 2843 aa2.03□□□□□ -2.09
VMP1-216ENST00000592790 H1FX-AS1Q4G0G2 97 aa2.02□□□□□ -2.09
VMP1-216ENST00000592790 SPINT4Q6UDR6 99 aa2.02□□□□□ -2.09
VMP1-216ENST00000592790 NBEAL1Q6ZS30 2694 aa2.02□□□□□ -2.09
VMP1-216ENST00000592790 ADM2Q7Z4H4 148 aa2.02□□□□□ -2.09
VMP1-216ENST00000592790 MXRA5Q9NR99 2828 aa2.01□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP13-3Q3SY46 172 aa2.01□□□□□ -2.09
VMP1-216ENST00000592790 ZANQ9Y493 2812 aa2.01□□□□□ -2.09
VMP1-216ENST00000592790 TENM3Q9P273 2699 aa2.01□□□□□ -2.09
VMP1-216ENST00000592790 RYR2Q92736 4967 aa2□□□□□ -2.09
VMP1-216ENST00000592790 C9orf92A6NGG3 77 aa2□□□□□ -2.09
VMP1-216ENST00000592790 NF1P21359 2839 aa2□□□□□ -2.09
VMP1-216ENST00000592790 PLECQ15149 4684 aaKnown RBP2□□□□□ -2.09
VMP1-216ENST00000592790 ROMO1P60602 79 aa2□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP25-1Q3LHN0 102 aa2□□□□□ -2.09
VMP1-216ENST00000592790 RPL37P61927 97 aaKnown RBP1.99□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP16-1A8MUX0 517 aa1.99□□□□□ -2.09
VMP1-216ENST00000592790 KRTAP13-2Q52LG2 175 aa1.99□□□□□ -2.09
VMP1-216ENST00000592790 ITPR2Q14571 2701 aa1.99□□□□□ -2.09
VMP1-216ENST00000592790 STAB2Q8WWQ8 2551 aa1.99□□□□□ -2.09
VMP1-216ENST00000592790 NSD1Q96L73 2696 aaPredicted RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms