RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 hADV29S1A0JD25 119 aa6.86□□□□□ -1.31
VPS53-218ENST00000575207 IFITM1P13164 125 aa6.86□□□□□ -1.31
VPS53-218ENST00000575207 ATOH7Q8N100 152 aa6.86□□□□□ -1.31
VPS53-218ENST00000575207 COA6Q5JTJ3 125 aaKnown RBP6.85□□□□□ -1.31
VPS53-218ENST00000575207 PPDPFLQ8WWR9 84 aa6.85□□□□□ -1.31
VPS53-218ENST00000575207 KRTAP4-8A0A0G2JLE6 195 aa6.84□□□□□ -1.31
VPS53-218ENST00000575207 KRTAP4-8Q9BYQ9 185 aa6.84□□□□□ -1.31
VPS53-218ENST00000575207 HSBP1L1C9JCN9 74 aa6.83□□□□□ -1.32
VPS53-218ENST00000575207 KRTAP12-2P59991 146 aa6.83□□□□□ -1.32
VPS53-218ENST00000575207 SNRPEP62304 92 aaKnown RBP6.83□□□□□ -1.32
VPS53-218ENST00000575207 VAMP3Q15836 100 aa6.83□□□□□ -1.32
VPS53-218ENST00000575207 S100A2P29034 98 aa6.82□□□□□ -1.32
VPS53-218ENST00000575207 MUSTN1Q8IVN3 82 aa6.82□□□□□ -1.32
VPS53-218ENST00000575207 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.8□□□□□ -1.32
VPS53-218ENST00000575207 SPRR5A0A1B0GTR4 108 aa6.79□□□□□ -1.32
VPS53-218ENST00000575207 PRO2289Q9P1D8 64 aa6.78□□□□□ -1.32
VPS53-218ENST00000575207 S100A6P06703 90 aa6.77□□□□□ -1.33
VPS53-218ENST00000575207 C8orf87E5RJ46 101 aa6.76□□□□□ -1.33
VPS53-218ENST00000575207 DEFB116Q30KQ4 102 aa6.76□□□□□ -1.33
VPS53-218ENST00000575207 C5orf47Q569G3 176 aa6.76□□□□□ -1.33
VPS53-218ENST00000575207 MT1XP80297 61 aa6.74□□□□□ -1.33
VPS53-218ENST00000575207 KLKP1Q107X0 134 aa6.73□□□□□ -1.33
VPS53-218ENST00000575207 HIST3H2BBQ8N257 126 aa6.72□□□□□ -1.33
VPS53-218ENST00000575207 DSCR8Q96T75 97 aa6.71□□□□□ -1.34
VPS53-218ENST00000575207 HIST1H2BLQ99880 126 aa6.71□□□□□ -1.34
VPS53-218ENST00000575207 LYRM7Q5U5X0 104 aa6.7□□□□□ -1.34
VPS53-218ENST00000575207 HIST1H4GQ99525 98 aa6.7□□□□□ -1.34
VPS53-218ENST00000575207 SNCGO76070 127 aa6.69□□□□□ -1.34
VPS53-218ENST00000575207 MT4P47944 62 aa6.69□□□□□ -1.34
VPS53-218ENST00000575207 RAB37Q96AX2 223 aa6.69□□□□□ -1.34
VPS53-218ENST00000575207 LINC00472Q9H8W2 130 aa6.69□□□□□ -1.34
VPS53-218ENST00000575207 A0A1B0GVX0 72 aa6.68□□□□□ -1.34
VPS53-218ENST00000575207 S100A1P23297 94 aa6.68□□□□□ -1.34
VPS53-218ENST00000575207 BVES-AS1Q5T3Y7 98 aa6.67□□□□□ -1.34
VPS53-218ENST00000575207 C12orf57Q99622 126 aa6.67□□□□□ -1.34
VPS53-218ENST00000575207 IGKV3D-7A0A0C4DH55 119 aa6.66□□□□□ -1.34
VPS53-218ENST00000575207 NDUFV3P56181 108 aaKnown RBP6.66□□□□□ -1.34
VPS53-218ENST00000575207 KRTAP5-3Q6L8H2 238 aa6.65□□□□□ -1.34
VPS53-218ENST00000575207 LCE4AQ5TA78 99 aa6.63□□□□□ -1.35
VPS53-218ENST00000575207 H3BMG7 143 aa6.61□□□□□ -1.35
VPS53-218ENST00000575207 COX8AP10176 69 aa6.61□□□□□ -1.35
VPS53-218ENST00000575207 PRR15Q8IV56 129 aa6.6□□□□□ -1.35
VPS53-218ENST00000575207 CSAG1Q6PB30 78 aa6.58□□□□□ -1.36
VPS53-218ENST00000575207 TRBV7-4A0A0J9YYF1 115 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 H0YGX0 51 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 DLEU1O43261 78 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 SPATA45Q537H7 98 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 C14orf144Q96I85 54 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 VAMP8Q9BV40 100 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 CRIPTQ9P021 101 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 PAM16Q9Y3D7 125 aa6.57□□□□□ -1.36
VPS53-218ENST00000575207 TMEM238LA0A1B0GVL6 79 aa6.55□□□□□ -1.36
VPS53-218ENST00000575207 LCA10Q71F78 164 aa6.55□□□□□ -1.36
VPS53-218ENST00000575207 A0A0B4J2C4 111 aa6.54□□□□□ -1.36
VPS53-218ENST00000575207 FABP2P12104 132 aa6.53□□□□□ -1.36
VPS53-218ENST00000575207 HIGD1BQ9P298 99 aa6.53□□□□□ -1.36
VPS53-218ENST00000575207 KRTAP4-12Q9BQ66 201 aa6.51□□□□□ -1.37
VPS53-218ENST00000575207 PRO1854Q9UHT4 67 aa6.51□□□□□ -1.37
VPS53-218ENST00000575207 DNAL4O96015 105 aa6.5□□□□□ -1.37
VPS53-218ENST00000575207 PSMB2P49721 201 aa6.49□□□□□ -1.37
VPS53-218ENST00000575207 CEND1Q8N111 149 aa6.49□□□□□ -1.37
VPS53-218ENST00000575207 A0A1B0GX51 115 aa6.48□□□□□ -1.37
VPS53-218ENST00000575207 RBM3P98179 157 aaKnown RBP6.48□□□□□ -1.37
VPS53-218ENST00000575207 S4R3F8 94 aa6.48□□□□□ -1.37
VPS53-218ENST00000575207 ANKRD29Q8N6D5 301 aa6.47□□□□□ -1.37
VPS53-218ENST00000575207 LCE5AQ5TCM9 118 aa6.46□□□□□ -1.38
VPS53-218ENST00000575207 C2orf91Q6ZV80 131 aa6.46□□□□□ -1.38
VPS53-218ENST00000575207 COX6CP09669 75 aa6.45□□□□□ -1.38
VPS53-218ENST00000575207 IGKV2D-30A0A075B6S6 120 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 H3BQ85 93 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 TRACP01848 142 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 IGKV2-30P06310 120 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 C4orf26Q17RF5 130 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 ORMDL1Q9P0S3 153 aa6.44□□□□□ -1.38
VPS53-218ENST00000575207 A0A1B0GV72 72 aa6.43□□□□□ -1.38
VPS53-218ENST00000575207 TRIAP1O43715 76 aa6.43□□□□□ -1.38
VPS53-218ENST00000575207 FXYD2P54710 66 aa6.42□□□□□ -1.38
VPS53-218ENST00000575207 HSD52Q0P140 79 aa6.41□□□□□ -1.38
VPS53-218ENST00000575207 C8orf17Q9NRJ1 99 aa6.41□□□□□ -1.38
VPS53-218ENST00000575207 J3KT08 172 aa6.4□□□□□ -1.38
VPS53-218ENST00000575207 CCKP06307 115 aa6.4□□□□□ -1.38
VPS53-218ENST00000575207 KRTAP10-12P60413 245 aa6.4□□□□□ -1.38
VPS53-218ENST00000575207 C7orf65Q6ZTY9 151 aa6.4□□□□□ -1.38
VPS53-218ENST00000575207 TMEM256-PLSCR3K7ERE1 68 aa6.39□□□□□ -1.39
VPS53-218ENST00000575207 NDUFB1O75438 58 aa6.39□□□□□ -1.39
VPS53-218ENST00000575207 KRTAP10-7P60409 375 aaPredicted RBP6.39□□□□□ -1.39
VPS53-218ENST00000575207 K7ERJ3 54 aa6.37□□□□□ -1.39
VPS53-218ENST00000575207 Q6ZVQ6 151 aa6.37□□□□□ -1.39
VPS53-218ENST00000575207 PLAC4Q8WY50 150 aa6.37□□□□□ -1.39
VPS53-218ENST00000575207 AHNAKQ09666 5890 aaKnown RBP6.37□□□□□ -1.39
VPS53-218ENST00000575207 SCGB1C2P0DMR2 95 aa6.36□□□□□ -1.39
VPS53-218ENST00000575207 VPS25Q9BRG1 176 aa6.36□□□□□ -1.39
VPS53-218ENST00000575207 UQCR10Q9UDW1 63 aa6.34□□□□□ -1.39
VPS53-218ENST00000575207 PYY3Q5JQD4 70 aa6.33□□□□□ -1.4
VPS53-218ENST00000575207 KRTAP5-4Q6L8H1 288 aa6.32□□□□□ -1.4
VPS53-218ENST00000575207 UBE2V1Q13404 147 aa6.31□□□□□ -1.4
VPS53-218ENST00000575207 KRTAP3-1Q9BYR8 98 aa6.31□□□□□ -1.4
VPS53-218ENST00000575207 TMA7Q9Y2S6 64 aaKnown RBP6.31□□□□□ -1.4
VPS53-218ENST00000575207 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
VPS53-218ENST00000575207 KRTAP9-4Q9BYQ2 154 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms