RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 PTPN13Q12923 2485 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 RELNP78509 3460 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 WFDC10BQ8IUB3 73 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 LINC00846Q9NV44 126 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 C6orf48Q9UBA6 75 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 MUC19Q7Z5P9 8384 aa1.66□□□□□ -2.14
NUP88-209ENST00000574855 ZFHX3Q15911 3703 aa1.65□□□□□ -2.14
NUP88-209ENST00000574855 DCHS2Q6V1P9 2916 aa1.65□□□□□ -2.14
NUP88-209ENST00000574855 IGSF10Q6WRI0 2623 aa1.65□□□□□ -2.15
NUP88-209ENST00000574855 IGKV4-1P06312 121 aa1.65□□□□□ -2.15
NUP88-209ENST00000574855 WNK1Q9H4A3 2382 aa1.65□□□□□ -2.15
NUP88-209ENST00000574855 TACC2O95359 2948 aa1.65□□□□□ -2.15
NUP88-209ENST00000574855 USP24Q9UPU5 2620 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 ETDCA0A1B0GVM5 59 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 SPINK7P58062 85 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 Q6ZQY7 126 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 UBE2DNLQ8IWF7 75 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 KCNQ1DNQ9H478 68 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 LINC00472Q9H8W2 130 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 MYO18BQ8IUG5 2567 aa1.64□□□□□ -2.15
NUP88-209ENST00000574855 UBR5O95071 2799 aaPredicted RBP1.64□□□□□ -2.15
NUP88-209ENST00000574855 COL12A1Q99715 3063 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 FBN2P35556 2912 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 H0Y9P7 68 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 HAMPP81172 84 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 NREPQ16612 68 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 SPATA8Q6RVD6 105 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 SONP18583 2426 aaKnown RBP1.63□□□□□ -2.15
NUP88-209ENST00000574855 CSMD1Q96PZ7 3565 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 POLQO75417 2590 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 ITPR1Q14643 2758 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 LRRK2Q5S007 2527 aa1.63□□□□□ -2.15
NUP88-209ENST00000574855 UTP20O75691 2785 aaKnown RBP1.62□□□□□ -2.15
NUP88-209ENST00000574855 TEX15Q9BXT5 2789 aa1.62□□□□□ -2.15
NUP88-209ENST00000574855 K7EIL1 84 aa1.62□□□□□ -2.15
NUP88-209ENST00000574855 CCDC168Q8NDH2 2452 aa1.62□□□□□ -2.15
NUP88-209ENST00000574855 ITPR3Q14573 2671 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 ACYP2P14621 99 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 Q6ZRX8 168 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 DEFB105AQ8NG35 78 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 CFAP46Q8IYW2 2715 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 ABCA12Q86UK0 2595 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 APCP25054 2843 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 ZFYVE26Q68DK2 2539 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 TLN2Q9Y4G6 2542 aa1.61□□□□□ -2.15
NUP88-209ENST00000574855 MYO9AB2RTY4 2548 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 IGLV5-48A0A075B6I7 105 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 SPRR1AP35321 89 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 ZCCHC13Q8WW36 166 aaKnown RBP1.6□□□□□ -2.15
NUP88-209ENST00000574855 APLNQ9ULZ1 77 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 ASH1LQ9NR48 2969 aaKnown RBP1.6□□□□□ -2.15
NUP88-209ENST00000574855 ACANP16112 2415 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 PDZD2O15018 2839 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 FLNCQ14315 2725 aa1.6□□□□□ -2.15
NUP88-209ENST00000574855 C2CD3Q4AC94 2353 aa1.59□□□□□ -2.15
NUP88-209ENST00000574855 EPG5Q9HCE0 2579 aa1.59□□□□□ -2.15
NUP88-209ENST00000574855 CELSR1Q9NYQ6 3014 aa1.59□□□□□ -2.15
NUP88-209ENST00000574855 FLNAP21333 2647 aaKnown RBP1.59□□□□□ -2.15
NUP88-209ENST00000574855 SVEP1Q4LDE5 3571 aa1.59□□□□□ -2.15
NUP88-209ENST00000574855 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.16
NUP88-209ENST00000574855 CELSR2Q9HCU4 2923 aa1.59□□□□□ -2.16
NUP88-209ENST00000574855 FASNP49327 2511 aaKnown RBP1.58□□□□□ -2.16
NUP88-209ENST00000574855 A0A096LNI7 61 aa1.58□□□□□ -2.16
NUP88-209ENST00000574855 NDUFB1O75438 58 aa1.58□□□□□ -2.16
NUP88-209ENST00000574855 MXRA5Q9NR99 2828 aa1.58□□□□□ -2.16
NUP88-209ENST00000574855 CRYBG3Q68DQ2 2970 aa1.58□□□□□ -2.16
NUP88-209ENST00000574855 CHD6Q8TD26 2715 aa1.58□□□□□ -2.16
NUP88-209ENST00000574855 KMT2BQ9UMN6 2715 aaPredicted RBP1.58□□□□□ -2.16
NUP88-209ENST00000574855 ZANQ9Y493 2812 aa1.57□□□□□ -2.16
NUP88-209ENST00000574855 MTORP42345 2549 aa1.57□□□□□ -2.16
NUP88-209ENST00000574855 SPRR1BP22528 89 aa1.57□□□□□ -2.16
NUP88-209ENST00000574855 VPS13CQ709C8 3753 aa1.56□□□□□ -2.16
NUP88-209ENST00000574855 LCE6AA0A183 80 aa1.56□□□□□ -2.16
NUP88-209ENST00000574855 PRLHP81277 87 aa1.56□□□□□ -2.16
NUP88-209ENST00000574855 UNC79Q9P2D8 2635 aa1.56□□□□□ -2.16
NUP88-209ENST00000574855 CSMD2Q7Z408 3487 aa1.56□□□□□ -2.16
NUP88-209ENST00000574855 HELZ2Q9BYK8 2649 aaKnown RBP1.55□□□□□ -2.16
NUP88-209ENST00000574855 JMJD1CQ15652 2540 aa1.55□□□□□ -2.16
NUP88-209ENST00000574855 MAP1AP78559 2803 aaPredicted RBP1.54□□□□□ -2.16
NUP88-209ENST00000574855 F8P00451 2351 aa1.54□□□□□ -2.16
NUP88-209ENST00000574855 KRTAP13-4Q3LI77 160 aa1.54□□□□□ -2.16
NUP88-209ENST00000574855 PLAC4Q8WY50 150 aa1.54□□□□□ -2.16
NUP88-209ENST00000574855 SETXQ7Z333 2677 aaKnown RBP1.54□□□□□ -2.16
NUP88-209ENST00000574855 ZNF469Q96JG9 3925 aaPredicted RBP1.54□□□□□ -2.16
NUP88-209ENST00000574855 SETD2Q9BYW2 2564 aaPredicted RBP1.53□□□□□ -2.16
NUP88-209ENST00000574855 CENPEQ02224 2701 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 ITPR2Q14571 2701 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 FBN1P35555 2871 aaKnown RBP1.53□□□□□ -2.16
NUP88-209ENST00000574855 A0A1B0GU69 56 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 K7EQZ3 153 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 LY6G6CO95867 125 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 TP53AIP1Q9HCN2 124 aa1.53□□□□□ -2.16
NUP88-209ENST00000574855 TENM4Q6N022 2769 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 HIVEP1P15822 2718 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 TEP1Q99973 2627 aaKnown RBP1.52□□□□□ -2.17
NUP88-209ENST00000574855 HECTD1Q9ULT8 2610 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 SSBP3-AS1Q7Z2R9 100 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 WFDC13Q8IUB5 93 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 KRTAP13-1Q8IUC0 172 aa1.52□□□□□ -2.17
NUP88-209ENST00000574855 ANK3Q12955 4377 aaKnown RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms