RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 KRTAP6-2Q3LI66 62 aa0.04□□□□□ -2.4
CHD3-217ENST00000574022 MAP1AP78559 2803 aaPredicted RBP0.04□□□□□ -2.4
CHD3-217ENST00000574022 ALMS1Q8TCU4 4167 aa0.03□□□□□ -2.4
CHD3-217ENST00000574022 NF1P21359 2839 aa0.03□□□□□ -2.4
CHD3-217ENST00000574022 KIF21BO75037 1637 aa0.03□□□□□ -2.4
CHD3-217ENST00000574022 FAM208AQ9UK61 1670 aaKnown RBP0.03□□□□□ -2.4
CHD3-217ENST00000574022 NOP10Q9NPE3 64 aaKnown RBP0.03□□□□□ -2.4
CHD3-217ENST00000574022 ABRACLQ9P1F3 81 aa0.03□□□□□ -2.4
CHD3-217ENST00000574022 PKD1L2Q7Z442 2459 aa0.02□□□□□ -2.41
CHD3-217ENST00000574022 HMCN1Q96RW7 5635 aa0.02□□□□□ -2.41
CHD3-217ENST00000574022 IGLV5-48A0A075B6I7 105 aa0.02□□□□□ -2.41
CHD3-217ENST00000574022 CMC2Q9NRP2 79 aa0.02□□□□□ -2.41
CHD3-217ENST00000574022 GCN1Q92616 2671 aaKnown RBP0.02□□□□□ -2.41
CHD3-217ENST00000574022 IQGAP1P46940 1657 aa0.02□□□□□ -2.41
CHD3-217ENST00000574022 STAB1Q9NY15 2570 aa0.01□□□□□ -2.41
CHD3-217ENST00000574022 SMIM27A0A1W2PRY6 76 aa0.01□□□□□ -2.41
CHD3-217ENST00000574022 SPRR2EP22531 72 aa0.01□□□□□ -2.41
CHD3-217ENST00000574022 ZZEF1O43149 2961 aa0.01□□□□□ -2.41
CHD3-217ENST00000574022 DDX60Q8IY21 1712 aaKnown RBP0.01□□□□□ -2.41
CHD3-217ENST00000574022 MUC5ACP98088 5654 aa0.01□□□□□ -2.41
CHD3-217ENST00000574022 SONP18583 2426 aaKnown RBP0.01□□□□□ -2.41
CHD3-217ENST00000574022 PDZD2O15018 2839 aa0□□□□□ -2.41
CHD3-217ENST00000574022 KAAG1Q9UBP8 84 aa0□□□□□ -2.41
CHD3-217ENST00000574022 AHNAK2Q8IVF2 5795 aa-0□□□□□ -2.41
CHD3-217ENST00000574022 LRP2P98164 4655 aa-0□□□□□ -2.41
CHD3-217ENST00000574022 SVEP1Q4LDE5 3571 aa-0□□□□□ -2.41
CHD3-217ENST00000574022 LYSTQ99698 3801 aa-0.01□□□□□ -2.41
CHD3-217ENST00000574022 ANKRD11Q6UB99 2663 aaPredicted RBP-0.01□□□□□ -2.41
CHD3-217ENST00000574022 DEFB110Q30KQ9 67 aa-0.01□□□□□ -2.41
CHD3-217ENST00000574022 WFDC10BQ8IUB3 73 aa-0.01□□□□□ -2.41
CHD3-217ENST00000574022 DMXL1Q9Y485 3027 aa-0.01□□□□□ -2.41
CHD3-217ENST00000574022 NBEAL1Q6ZS30 2694 aa-0.01□□□□□ -2.41
CHD3-217ENST00000574022 LRP1BQ9NZR2 4599 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 MDN1Q9NU22 5596 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 MMP24-AS1A0A0U1RRL7 71 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 SNRPGP15A8MWD9 76 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 MT1AP04731 61 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 MTORP42345 2549 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 KMT2DO14686 5537 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 STAB2Q8WWQ8 2551 aa-0.02□□□□□ -2.41
CHD3-217ENST00000574022 CUBNO60494 3623 aa-0.03□□□□□ -2.41
CHD3-217ENST00000574022 M0QY20 66 aa-0.03□□□□□ -2.41
CHD3-217ENST00000574022 SPG11Q96JI7 2443 aa-0.03□□□□□ -2.41
CHD3-217ENST00000574022 TGP01266 2768 aa-0.03□□□□□ -2.41
CHD3-217ENST00000574022 TEP1Q99973 2627 aaKnown RBP-0.04□□□□□ -2.42
CHD3-217ENST00000574022 TNP1P09430 55 aa-0.04□□□□□ -2.42
CHD3-217ENST00000574022 SPRR2FQ96RM1 72 aa-0.04□□□□□ -2.42
CHD3-217ENST00000574022 HTTP42858 3142 aa-0.04□□□□□ -2.42
CHD3-217ENST00000574022 HIVEP1P15822 2718 aa-0.04□□□□□ -2.42
CHD3-217ENST00000574022 TACC2O95359 2948 aa-0.04□□□□□ -2.42
CHD3-217ENST00000574022 TFF3Q07654 80 aa-0.05□□□□□ -2.42
CHD3-217ENST00000574022 KRTAP6-1Q3LI64 71 aa-0.05□□□□□ -2.42
CHD3-217ENST00000574022 LRRK2Q5S007 2527 aa-0.05□□□□□ -2.42
CHD3-217ENST00000574022 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.05□□□□□ -2.42
CHD3-217ENST00000574022 SRRM2Q9UQ35 2752 aaKnown RBP-0.05□□□□□ -2.42
CHD3-217ENST00000574022 EPG5Q9HCE0 2579 aa-0.05□□□□□ -2.42
CHD3-217ENST00000574022 IQGAP2Q13576 1575 aa-0.06□□□□□ -2.42
CHD3-217ENST00000574022 NFAT5O94916 1531 aa-0.06□□□□□ -2.42
CHD3-217ENST00000574022 FLGP20930 4061 aaPredicted RBP-0.06□□□□□ -2.42
CHD3-217ENST00000574022 LINC01546A6NGU7 62 aa-0.06□□□□□ -2.42
CHD3-217ENST00000574022 CLTCL1P53675 1640 aa-0.06□□□□□ -2.42
CHD3-217ENST00000574022 VPS13BQ7Z7G8 4022 aa-0.06□□□□□ -2.42
CHD3-217ENST00000574022 FASNP49327 2511 aaKnown RBP-0.07□□□□□ -2.42
CHD3-217ENST00000574022 KRTAP19-7Q3SYF9 63 aa-0.07□□□□□ -2.42
CHD3-217ENST00000574022 SMIM2Q9BVW6 85 aa-0.07□□□□□ -2.42
CHD3-217ENST00000574022 UTP20O75691 2785 aaKnown RBP-0.07□□□□□ -2.42
CHD3-217ENST00000574022 PKHD1P08F94 4074 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 KALRNO60229 2985 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 PKD1P98161 4303 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 A8MTW9 85 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 MXRA5Q9NR99 2828 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 A0A0C4DFX4 3053 aa-0.08□□□□□ -2.42
CHD3-217ENST00000574022 RANBP2P49792 3224 aaKnown RBP-0.08□□□□□ -2.42
CHD3-217ENST00000574022 ACACBO00763 2458 aa-0.09□□□□□ -2.42
CHD3-217ENST00000574022 M0QZ58 72 aa-0.09□□□□□ -2.42
CHD3-217ENST00000574022 DEFB131AP59861 70 aa-0.09□□□□□ -2.42
CHD3-217ENST00000574022 NBEAQ8NFP9 2946 aa-0.1□□□□□ -2.42
CHD3-217ENST00000574022 FAM186AA6NE01 2351 aa-0.1□□□□□ -2.42
CHD3-217ENST00000574022 ACACAQ13085 2346 aa-0.1□□□□□ -2.43
CHD3-217ENST00000574022 TRPM2O94759 1503 aa-0.1□□□□□ -2.43
CHD3-217ENST00000574022 NBEAL2Q6ZNJ1 2754 aa-0.1□□□□□ -2.43
CHD3-217ENST00000574022 FAT3Q8TDW7 4589 aa-0.1□□□□□ -2.43
CHD3-217ENST00000574022 MYO18BQ8IUG5 2567 aa-0.1□□□□□ -2.43
CHD3-217ENST00000574022 CLPSL2Q6UWE3 100 aa-0.11□□□□□ -2.43
CHD3-217ENST00000574022 SSPOA2VEC9 5147 aa-0.11□□□□□ -2.43
CHD3-217ENST00000574022 WDR87Q6ZQQ6 2873 aa-0.12□□□□□ -2.43
CHD3-217ENST00000574022 MUC2Q02817 5179 aa-0.12□□□□□ -2.43
CHD3-217ENST00000574022 LAMA5O15230 3695 aa-0.12□□□□□ -2.43
CHD3-217ENST00000574022 MGAM2Q2M2H8 2515 aa-0.12□□□□□ -2.43
CHD3-217ENST00000574022 ANK3Q12955 4377 aaKnown RBP-0.12□□□□□ -2.43
CHD3-217ENST00000574022 TRIOO75962 3097 aa-0.12□□□□□ -2.43
CHD3-217ENST00000574022 RIF1Q5UIP0 2472 aaKnown RBP-0.13□□□□□ -2.43
CHD3-217ENST00000574022 KRTAP19-8Q3LI54 63 aa-0.13□□□□□ -2.43
CHD3-217ENST00000574022 LAMA1P25391 3075 aa-0.13□□□□□ -2.43
CHD3-217ENST00000574022 SACSQ9NZJ4 4579 aa-0.13□□□□□ -2.43
CHD3-217ENST00000574022 DNAH9Q9NYC9 4486 aa-0.14□□□□□ -2.43
CHD3-217ENST00000574022 AKAP9Q99996 3911 aa-0.14□□□□□ -2.43
CHD3-217ENST00000574022 NDUFA1O15239 70 aa-0.14□□□□□ -2.43
CHD3-217ENST00000574022 TOMM5Q8N4H5 51 aa-0.14□□□□□ -2.43
CHD3-217ENST00000574022 CCDC168Q8NDH2 2452 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms