RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CLEC2BQ92478 149 aa4.9□□□□□ -1.63
CIITA-208ENST00000572665 K7ERJ3 54 aa4.89□□□□□ -1.63
CIITA-208ENST00000572665 SNCGO76070 127 aa4.89□□□□□ -1.63
CIITA-208ENST00000572665 A0A0G2JQZ4 141 aa4.88□□□□□ -1.63
CIITA-208ENST00000572665 TRBV7-7A0A0K0K1E9 115 aa4.88□□□□□ -1.63
CIITA-208ENST00000572665 Q6ZQY7 126 aa4.88□□□□□ -1.63
CIITA-208ENST00000572665 H0YGX0 51 aa4.87□□□□□ -1.63
CIITA-208ENST00000572665 M0R143 59 aa4.87□□□□□ -1.63
CIITA-208ENST00000572665 OCIAD2Q56VL3 154 aa4.87□□□□□ -1.63
CIITA-208ENST00000572665 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.87□□□□□ -1.63
CIITA-208ENST00000572665 SNHG12Q9BXW3 62 aa4.86□□□□□ -1.63
CIITA-208ENST00000572665 SS18L2Q9UHA2 77 aa4.86□□□□□ -1.63
CIITA-208ENST00000572665 LST1O00453 97 aa4.85□□□□□ -1.63
CIITA-208ENST00000572665 IGFL1Q6UW32 110 aa4.85□□□□□ -1.63
CIITA-208ENST00000572665 FSIP2Q5CZC0 6907 aa4.84□□□□□ -1.63
CIITA-208ENST00000572665 A0A1B0GX51 115 aa4.84□□□□□ -1.63
CIITA-208ENST00000572665 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.84□□□□□ -1.63
CIITA-208ENST00000572665 Q6Q795 121 aa4.84□□□□□ -1.63
CIITA-208ENST00000572665 OBSCN-AS1Q96MR7 158 aa4.84□□□□□ -1.63
CIITA-208ENST00000572665 TRBV20-1A0A075B6N2 111 aa4.82□□□□□ -1.64
CIITA-208ENST00000572665 PSMB2P49721 201 aa4.82□□□□□ -1.64
CIITA-208ENST00000572665 COX6CP09669 75 aa4.81□□□□□ -1.64
CIITA-208ENST00000572665 KRTAP5-11Q6L8G4 156 aa4.81□□□□□ -1.64
CIITA-208ENST00000572665 MTURNQ8N3F0 131 aa4.81□□□□□ -1.64
CIITA-208ENST00000572665 Q96NJ1 140 aa4.81□□□□□ -1.64
CIITA-208ENST00000572665 A8MU10 97 aa4.79□□□□□ -1.64
CIITA-208ENST00000572665 TEN1Q86WV5 123 aa4.79□□□□□ -1.64
CIITA-208ENST00000572665 TRACP01848 142 aa4.78□□□□□ -1.64
CIITA-208ENST00000572665 BATFQ16520 125 aa4.78□□□□□ -1.64
CIITA-208ENST00000572665 H3BUT2 72 aa4.77□□□□□ -1.65
CIITA-208ENST00000572665 C20orf166-AS1Q96NR2 134 aa4.77□□□□□ -1.65
CIITA-208ENST00000572665 H3BQ85 93 aa4.76□□□□□ -1.65
CIITA-208ENST00000572665 DNAL4O96015 105 aa4.76□□□□□ -1.65
CIITA-208ENST00000572665 SCGB1C2P0DMR2 95 aa4.76□□□□□ -1.65
CIITA-208ENST00000572665 NAA38Q9BRA0 125 aaKnown RBP4.76□□□□□ -1.65
CIITA-208ENST00000572665 ORMDL1Q9P0S3 153 aa4.76□□□□□ -1.65
CIITA-208ENST00000572665 TAX1BP3O14907 124 aa4.75□□□□□ -1.65
CIITA-208ENST00000572665 A0A087WSZ3 146 aa4.74□□□□□ -1.65
CIITA-208ENST00000572665 A8MUU9 505 aa4.74□□□□□ -1.65
CIITA-208ENST00000572665 TMEM256-PLSCR3K7ERE1 68 aa4.74□□□□□ -1.65
CIITA-208ENST00000572665 FLGP20930 4061 aaPredicted RBP4.73□□□□□ -1.65
CIITA-208ENST00000572665 H3BMG7 143 aa4.73□□□□□ -1.65
CIITA-208ENST00000572665 FABP2P12104 132 aa4.73□□□□□ -1.65
CIITA-208ENST00000572665 ATXN8Q156A1 80 aa4.73□□□□□ -1.65
CIITA-208ENST00000572665 LYRM7Q5U5X0 104 aa4.73□□□□□ -1.65
CIITA-208ENST00000572665 SIGMAR1Q99720 223 aa4.72□□□□□ -1.65
CIITA-208ENST00000572665 FAM236DA0A1B0GTK5 79 aa4.71□□□□□ -1.66
CIITA-208ENST00000572665 A0A1W2PPM0 123 aa4.71□□□□□ -1.66
CIITA-208ENST00000572665 FAM236CP0DP71 79 aa4.71□□□□□ -1.66
CIITA-208ENST00000572665 LINC00313P59037 77 aa4.71□□□□□ -1.66
CIITA-208ENST00000572665 COL5A1-AS1Q5SY13 56 aa4.71□□□□□ -1.66
CIITA-208ENST00000572665 RBM12B-AS1Q9P1G2 102 aa4.7□□□□□ -1.66
CIITA-208ENST00000572665 PCP4L1A6NKN8 68 aa4.69□□□□□ -1.66
CIITA-208ENST00000572665 BAALC-AS2P0C853 105 aa4.69□□□□□ -1.66
CIITA-208ENST00000572665 ANKRD29Q8N6D5 301 aa4.69□□□□□ -1.66
CIITA-208ENST00000572665 TRBV7-4A0A0J9YYF1 115 aa4.68□□□□□ -1.66
CIITA-208ENST00000572665 IGKV4-1P06312 121 aa4.68□□□□□ -1.66
CIITA-208ENST00000572665 A0A1W2PNM2 257 aa4.67□□□□□ -1.66
CIITA-208ENST00000572665 C9JAW5 83 aa4.66□□□□□ -1.66
CIITA-208ENST00000572665 A0A1B0GV72 72 aa4.65□□□□□ -1.67
CIITA-208ENST00000572665 RBM3P98179 157 aaKnown RBP4.65□□□□□ -1.67
CIITA-208ENST00000572665 SPCS1Q9Y6A9 102 aa4.65□□□□□ -1.67
CIITA-208ENST00000572665 JMJD7-PLA2G4BH0Y9G9 81 aa4.64□□□□□ -1.67
CIITA-208ENST00000572665 H3BT86 120 aa4.64□□□□□ -1.67
CIITA-208ENST00000572665 CCKP06307 115 aa4.63□□□□□ -1.67
CIITA-208ENST00000572665 DSCR8Q96T75 97 aa4.63□□□□□ -1.67
CIITA-208ENST00000572665 LOC110117498A0A087WWA1 95 aa4.62□□□□□ -1.67
CIITA-208ENST00000572665 IGHV6-1A0A0B4J1U7 121 aa4.62□□□□□ -1.67
CIITA-208ENST00000572665 C8orf87E5RJ46 101 aa4.62□□□□□ -1.67
CIITA-208ENST00000572665 K7EP34 96 aa4.62□□□□□ -1.67
CIITA-208ENST00000572665 Q6ZQT0 140 aa4.61□□□□□ -1.67
CIITA-208ENST00000572665 PDE6GP18545 87 aa4.6□□□□□ -1.67
CIITA-208ENST00000572665 LINC00472Q9H8W2 130 aa4.6□□□□□ -1.67
CIITA-208ENST00000572665 LINC00846Q9NV44 126 aa4.6□□□□□ -1.67
CIITA-208ENST00000572665 PRO0461Q9UI25 63 aa4.6□□□□□ -1.67
CIITA-208ENST00000572665 A0A1B0GW54 56 aa4.59□□□□□ -1.67
CIITA-208ENST00000572665 J3KT08 172 aa4.59□□□□□ -1.67
CIITA-208ENST00000572665 DEFB116Q30KQ4 102 aa4.59□□□□□ -1.67
CIITA-208ENST00000572665 C14orf132Q9NPU4 83 aa4.59□□□□□ -1.67
CIITA-208ENST00000572665 A0A1B0GVX0 72 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 HRES1P13985 223 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 KRTAP10-10P60014 251 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 LCE3EQ5T5B0 92 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 GTF2H5Q6ZYL4 71 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 VPS25Q9BRG1 176 aa4.58□□□□□ -1.68
CIITA-208ENST00000572665 NDUFB1O75438 58 aa4.57□□□□□ -1.68
CIITA-208ENST00000572665 MT2AP02795 61 aa4.57□□□□□ -1.68
CIITA-208ENST00000572665 SEC61GP60059 68 aa4.55□□□□□ -1.68
CIITA-208ENST00000572665 ZCCHC13Q8WW36 166 aaKnown RBP4.55□□□□□ -1.68
CIITA-208ENST00000572665 F8W1H4 67 aa4.54□□□□□ -1.68
CIITA-208ENST00000572665 SPINK7P58062 85 aa4.53□□□□□ -1.68
CIITA-208ENST00000572665 MT1FP04733 61 aa4.52□□□□□ -1.69
CIITA-208ENST00000572665 A8MWP4 228 aa4.51□□□□□ -1.69
CIITA-208ENST00000572665 NREPQ16612 68 aa4.48□□□□□ -1.69
CIITA-208ENST00000572665 ETDBQ3ZM63 59 aa4.48□□□□□ -1.69
CIITA-208ENST00000572665 KRTAP12-2P59991 146 aa4.47□□□□□ -1.69
CIITA-208ENST00000572665 WFDC13Q8IUB5 93 aa4.47□□□□□ -1.69
CIITA-208ENST00000572665 USH2AO75445 5202 aa4.47□□□□□ -1.69
CIITA-208ENST00000572665 A0A1B0GV90 55 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms