RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 HECTD4Q9Y4D8 3996 aa5.3□□□□□ -1.56
LINC00558-201ENST00000569422 LINC00472Q9H8W2 130 aa5.3□□□□□ -1.56
LINC00558-201ENST00000569422 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
LINC00558-201ENST00000569422 FBN3Q75N90 2809 aa5.29□□□□□ -1.56
LINC00558-201ENST00000569422 A8MWP4 228 aa5.29□□□□□ -1.56
LINC00558-201ENST00000569422 CYP4F30PQ9H0H9 118 aa5.29□□□□□ -1.56
LINC00558-201ENST00000569422 CHKB-CPT1BH3BT56 60 aa5.28□□□□□ -1.56
LINC00558-201ENST00000569422 SPINK6Q6UWN8 80 aa5.28□□□□□ -1.56
LINC00558-201ENST00000569422 Q6ZR54 194 aa5.28□□□□□ -1.56
LINC00558-201ENST00000569422 NDUFB1O75438 58 aa5.27□□□□□ -1.57
LINC00558-201ENST00000569422 ASB16-AS1Q495Z4 193 aa5.27□□□□□ -1.57
LINC00558-201ENST00000569422 H0Y9P7 68 aa5.26□□□□□ -1.57
LINC00558-201ENST00000569422 ZNF861PO60384 105 aa5.26□□□□□ -1.57
LINC00558-201ENST00000569422 KRTAP29-1A8MX34 341 aaPredicted RBP5.26□□□□□ -1.57
LINC00558-201ENST00000569422 KRTAP16-1A8MUX0 517 aa5.25□□□□□ -1.57
LINC00558-201ENST00000569422 CIRBP-AS1Q8TBR5 109 aa5.25□□□□□ -1.57
LINC00558-201ENST00000569422 WWC2-AS2Q96NR7 200 aa5.25□□□□□ -1.57
LINC00558-201ENST00000569422 LCE6AA0A183 80 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 KRTAP10-2P60368 255 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 PLAC8Q9NZF1 115 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 DNAH6Q9C0G6 4158 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 A0A087X002 238 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 C1orf64Q8NEQ6 169 aa5.24□□□□□ -1.57
LINC00558-201ENST00000569422 ZCCHC13Q8WW36 166 aaKnown RBP5.24□□□□□ -1.57
LINC00558-201ENST00000569422 MMP24-AS1A0A0U1RRL7 71 aa5.23□□□□□ -1.57
LINC00558-201ENST00000569422 DNAH17Q9UFH2 4485 aa5.23□□□□□ -1.57
LINC00558-201ENST00000569422 DNAH8Q96JB1 4490 aa5.23□□□□□ -1.57
LINC00558-201ENST00000569422 Q96NJ1 140 aa5.22□□□□□ -1.57
LINC00558-201ENST00000569422 PCOTHQ58A44 107 aa5.22□□□□□ -1.57
LINC00558-201ENST00000569422 IGLV7-43P04211 117 aa5.21□□□□□ -1.58
LINC00558-201ENST00000569422 LINC00483Q53H64 154 aa5.21□□□□□ -1.58
LINC00558-201ENST00000569422 LIMD2Q9BT23 127 aa5.21□□□□□ -1.58
LINC00558-201ENST00000569422 ROMO1P60602 79 aa5.2□□□□□ -1.58
LINC00558-201ENST00000569422 KRTAP3-3Q9BYR6 98 aa5.2□□□□□ -1.58
LINC00558-201ENST00000569422 KRTAP3-2Q9BYR7 98 aa5.2□□□□□ -1.58
LINC00558-201ENST00000569422 C8orf17Q9NRJ1 99 aa5.2□□□□□ -1.58
LINC00558-201ENST00000569422 DNAH11Q96DT5 4516 aa5.19□□□□□ -1.58
LINC00558-201ENST00000569422 A6NED7 52 aa5.19□□□□□ -1.58
LINC00558-201ENST00000569422 A0A1B0GVX0 72 aa5.17□□□□□ -1.58
LINC00558-201ENST00000569422 HYDINQ4G0P3 5121 aa5.16□□□□□ -1.58
LINC00558-201ENST00000569422 KRTAP10-1P60331 282 aa5.16□□□□□ -1.58
LINC00558-201ENST00000569422 DNAH5Q8TE73 4624 aa5.15□□□□□ -1.58
LINC00558-201ENST00000569422 LOC101927531A0A1B0GV80 90 aa5.15□□□□□ -1.59
LINC00558-201ENST00000569422 Q8N9P0 234 aaPredicted RBP5.14□□□□□ -1.59
LINC00558-201ENST00000569422 MRPL34Q9BQ48 92 aaKnown RBP5.14□□□□□ -1.59
LINC00558-201ENST00000569422 ALMS1Q8TCU4 4167 aa5.13□□□□□ -1.59
LINC00558-201ENST00000569422 PRR15LQ9BU68 103 aa5.13□□□□□ -1.59
LINC00558-201ENST00000569422 LRP1BQ9NZR2 4599 aa5.13□□□□□ -1.59
LINC00558-201ENST00000569422 H3BPC8 53 aa5.11□□□□□ -1.59
LINC00558-201ENST00000569422 TP53AIP1Q9HCN2 124 aa5.11□□□□□ -1.59
LINC00558-201ENST00000569422 KRTAP13-2Q52LG2 175 aa5.09□□□□□ -1.59
LINC00558-201ENST00000569422 Q5W150 140 aa5.09□□□□□ -1.59
LINC00558-201ENST00000569422 SSBP3-AS1Q7Z2R9 100 aa5.08□□□□□ -1.6
LINC00558-201ENST00000569422 P0C880 135 aa5.08□□□□□ -1.6
LINC00558-201ENST00000569422 SPANXA2-OT1Q8N9U9 137 aa5.08□□□□□ -1.6
LINC00558-201ENST00000569422 COA5Q86WW8 74 aa5.07□□□□□ -1.6
LINC00558-201ENST00000569422 SMR3BP02814 79 aaPredicted RBP5.06□□□□□ -1.6
LINC00558-201ENST00000569422 LUZP6Q538Z0 58 aa5.06□□□□□ -1.6
LINC00558-201ENST00000569422 CSAG1Q6PB30 78 aa5.06□□□□□ -1.6
LINC00558-201ENST00000569422 IGLV7-46A0A075B6I9 117 aa5.06□□□□□ -1.6
LINC00558-201ENST00000569422 VPS13BQ7Z7G8 4022 aa5.05□□□□□ -1.6
LINC00558-201ENST00000569422 FAT2Q9NYQ8 4349 aa5.05□□□□□ -1.6
LINC00558-201ENST00000569422 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
LINC00558-201ENST00000569422 Q6ZSA8 131 aa5.04□□□□□ -1.6
LINC00558-201ENST00000569422 SPAG11AQ6PDA7 123 aa5.04□□□□□ -1.6
LINC00558-201ENST00000569422 PKD1P98161 4303 aa5.03□□□□□ -1.6
LINC00558-201ENST00000569422 PKHD1P08F94 4074 aa5.02□□□□□ -1.61
LINC00558-201ENST00000569422 TYMSOSQ8TAI1 123 aa5.02□□□□□ -1.61
LINC00558-201ENST00000569422 KRTAP1-4P0C5Y4 121 aa5.01□□□□□ -1.61
LINC00558-201ENST00000569422 LCE2DQ5TA82 110 aaPredicted RBP5.01□□□□□ -1.61
LINC00558-201ENST00000569422 HRES1P13985 223 aa5□□□□□ -1.61
LINC00558-201ENST00000569422 IGKV2D-30A0A075B6S6 120 aa4.98□□□□□ -1.61
LINC00558-201ENST00000569422 IGKV2-30P06310 120 aa4.98□□□□□ -1.61
LINC00558-201ENST00000569422 KRTAP13-3Q3SY46 172 aa4.96□□□□□ -1.62
LINC00558-201ENST00000569422 SPINK7P58062 85 aa4.95□□□□□ -1.62
LINC00558-201ENST00000569422 FAT1Q14517 4588 aa4.95□□□□□ -1.62
LINC00558-201ENST00000569422 C20orf166-AS1Q96NR2 134 aa4.94□□□□□ -1.62
LINC00558-201ENST00000569422 SACSQ9NZJ4 4579 aa4.94□□□□□ -1.62
LINC00558-201ENST00000569422 LINC01558Q9Y6Z2 57 aa4.93□□□□□ -1.62
LINC00558-201ENST00000569422 K7ERS5 55 aa4.92□□□□□ -1.62
LINC00558-201ENST00000569422 LINC00304Q8N9R0 145 aa4.92□□□□□ -1.62
LINC00558-201ENST00000569422 C9orf92A6NGG3 77 aa4.92□□□□□ -1.62
LINC00558-201ENST00000569422 DYNC1H1Q14204 4646 aaKnown RBP4.91□□□□□ -1.62
LINC00558-201ENST00000569422 SPINK1P00995 79 aa4.91□□□□□ -1.62
LINC00558-201ENST00000569422 ACYP2P14621 99 aa4.91□□□□□ -1.62
LINC00558-201ENST00000569422 NDUFAF8A1L188 74 aa4.88□□□□□ -1.63
LINC00558-201ENST00000569422 Q8N1X5 172 aa4.86□□□□□ -1.63
LINC00558-201ENST00000569422 DMAC1Q96GE9 116 aa4.86□□□□□ -1.63
LINC00558-201ENST00000569422 KMT2CQ8NEZ4 4911 aaKnown RBP4.85□□□□□ -1.63
LINC00558-201ENST00000569422 KRTAP21-3Q3LHN1 58 aa4.85□□□□□ -1.63
LINC00558-201ENST00000569422 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
LINC00558-201ENST00000569422 A8MUU9 505 aa4.84□□□□□ -1.63
LINC00558-201ENST00000569422 A0A1B0GVY2 172 aa4.81□□□□□ -1.64
LINC00558-201ENST00000569422 APOBP04114 4563 aaKnown RBP4.81□□□□□ -1.64
LINC00558-201ENST00000569422 A0A1B0GU69 56 aa4.8□□□□□ -1.64
LINC00558-201ENST00000569422 FLG2Q5D862 2391 aaPredicted RBP4.78□□□□□ -1.64
LINC00558-201ENST00000569422 RYR2Q92736 4967 aa4.78□□□□□ -1.64
LINC00558-201ENST00000569422 KRTAP10-4P60372 401 aaPredicted RBP4.77□□□□□ -1.65
LINC00558-201ENST00000569422 DMBT1Q9UGM3 2413 aaPredicted RBP4.77□□□□□ -1.65
LINC00558-201ENST00000569422 LRP1Q07954 4544 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms