RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TRANK1O15050 2925 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 HMCN1Q96RW7 5635 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 H3BNG1 76 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 LINC01556Q5JQF7 62 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 LCE3DQ9BYE3 92 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 BSNQ9UPA5 3926 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 REV3LO60673 3130 aa1.6□□□□□ -2.15
VPS35-208ENST00000568612 CACNA1HO95180 2353 aa1.59□□□□□ -2.15
VPS35-208ENST00000568612 CHD9Q3L8U1 2897 aa1.59□□□□□ -2.15
VPS35-208ENST00000568612 A0A096LNI7 61 aa1.59□□□□□ -2.15
VPS35-208ENST00000568612 LAMA5O15230 3695 aa1.59□□□□□ -2.16
VPS35-208ENST00000568612 HIVEP2P31629 2446 aa1.59□□□□□ -2.16
VPS35-208ENST00000568612 ANKHD1Q8IWZ3 2542 aaKnown RBP1.59□□□□□ -2.16
VPS35-208ENST00000568612 ATMQ13315 3056 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 CELSR3Q9NYQ7 3312 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 ASPMQ8IZT6 3477 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 KRTAP10-1P60331 282 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 PP632Q6XCG6 107 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 DEFB124Q8NES8 71 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 LRBAP50851 2863 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 TACC2O95359 2948 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 SPG11Q96JI7 2443 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 CELSR1Q9NYQ6 3014 aa1.58□□□□□ -2.16
VPS35-208ENST00000568612 UBR5O95071 2799 aaPredicted RBP1.57□□□□□ -2.16
VPS35-208ENST00000568612 SPRR5A0A1B0GTR4 108 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 KRTAP13-4Q3LI77 160 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 SPINK6Q6UWN8 80 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 TRRAPQ9Y4A5 3859 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 NBASA2RRP1 2371 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 MUC6Q6W4X9 2439 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 CREBBPQ92793 2442 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 DNAH11Q96DT5 4516 aa1.57□□□□□ -2.16
VPS35-208ENST00000568612 RIF1Q5UIP0 2472 aaKnown RBP1.57□□□□□ -2.16
VPS35-208ENST00000568612 PRRC2CQ9Y520 2896 aaKnown RBP1.57□□□□□ -2.16
VPS35-208ENST00000568612 BAHCC1Q9P281 2608 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 FBN1P35555 2871 aaKnown RBP1.56□□□□□ -2.16
VPS35-208ENST00000568612 A0A0D9SG42 100 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 SPART-AS1P0CW21 52 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 APLNQ9ULZ1 77 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 RELNP78509 3460 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 FRAS1Q86XX4 4008 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 CSPG4Q6UVK1 2322 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 CEP290O15078 2479 aa1.56□□□□□ -2.16
VPS35-208ENST00000568612 VWFP04275 2813 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 FN1P02751 2386 aaKnown RBP1.55□□□□□ -2.16
VPS35-208ENST00000568612 MYO15AQ9UKN7 3530 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 NF1P21359 2839 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 DMXL1Q9Y485 3027 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 ANK2Q01484 3957 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 CCDC168Q8NDH2 2452 aa1.55□□□□□ -2.16
VPS35-208ENST00000568612 FAM208BQ5VWN6 2430 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 ZNF462Q96JM2 2506 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 TLN1Q9Y490 2541 aaKnown RBP1.54□□□□□ -2.16
VPS35-208ENST00000568612 HTN3P15516 51 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 KRTAP12-1P59990 96 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 LCE1CQ5T751 118 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 LCE1BQ5T7P3 118 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 F8P00451 2351 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 NAV2Q8IVL1 2488 aa1.54□□□□□ -2.16
VPS35-208ENST00000568612 HRNRQ86YZ3 2850 aaPredicted RBP1.53□□□□□ -2.16
VPS35-208ENST00000568612 APCP25054 2843 aa1.53□□□□□ -2.16
VPS35-208ENST00000568612 DCHS2Q6V1P9 2916 aa1.53□□□□□ -2.17
VPS35-208ENST00000568612 SETXQ7Z333 2677 aaKnown RBP1.53□□□□□ -2.17
VPS35-208ENST00000568612 HIVEP3Q5T1R4 2406 aa1.52□□□□□ -2.17
VPS35-208ENST00000568612 DEFB135Q30KP9 77 aa1.52□□□□□ -2.17
VPS35-208ENST00000568612 VPS13CQ709C8 3753 aa1.52□□□□□ -2.17
VPS35-208ENST00000568612 MEGF8Q7Z7M0 2845 aa1.52□□□□□ -2.17
VPS35-208ENST00000568612 TLN2Q9Y4G6 2542 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 OTOGLQ3ZCN5 2332 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 MYCBP2O75592 4640 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 ANK3Q12955 4377 aaKnown RBP1.51□□□□□ -2.17
VPS35-208ENST00000568612 DNAH8Q96JB1 4490 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 DEFB4AO15263 64 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 SPTAN1Q13813 2472 aaKnown RBP1.51□□□□□ -2.17
VPS35-208ENST00000568612 TEX15Q9BXT5 2789 aa1.51□□□□□ -2.17
VPS35-208ENST00000568612 JMJD1CQ15652 2540 aa1.5□□□□□ -2.17
VPS35-208ENST00000568612 USP9XQ93008 2570 aaPredicted RBP1.5□□□□□ -2.17
VPS35-208ENST00000568612 CSMD3Q7Z407 3707 aa1.49□□□□□ -2.17
VPS35-208ENST00000568612 DYNC2H1Q8NCM8 4307 aaKnown RBP1.49□□□□□ -2.17
VPS35-208ENST00000568612 PRKDCP78527 4128 aaKnown RBP1.48□□□□□ -2.17
VPS35-208ENST00000568612 HUWE1Q7Z6Z7 4374 aaKnown RBP1.48□□□□□ -2.17
VPS35-208ENST00000568612 UTP20O75691 2785 aaKnown RBP1.48□□□□□ -2.17
VPS35-208ENST00000568612 ADGRG4Q8IZF6 3080 aa1.48□□□□□ -2.17
VPS35-208ENST00000568612 NIPBLQ6KC79 2804 aaeCLIP1.48□□□□□ -2.17
VPS35-208ENST00000568612 DNAH6Q9C0G6 4158 aa1.48□□□□□ -2.17
VPS35-208ENST00000568612 SRRM2Q9UQ35 2752 aaKnown RBP1.47□□□□□ -2.17
VPS35-208ENST00000568612 PTPN13Q12923 2485 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 COL6A5A8TX70 2615 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 CMYA5Q8N3K9 4069 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 Q5VSD8 79 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 MUC3AQ02505 3323 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 DNAH7Q8WXX0 4024 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 DNAH2Q9P225 4427 aa1.47□□□□□ -2.17
VPS35-208ENST00000568612 GCN1Q92616 2671 aaKnown RBP1.46□□□□□ -2.18
VPS35-208ENST00000568612 SONP18583 2426 aaKnown RBP1.46□□□□□ -2.18
VPS35-208ENST00000568612 CUBNO60494 3623 aa1.46□□□□□ -2.18
VPS35-208ENST00000568612 HECTD1Q9ULT8 2610 aa1.46□□□□□ -2.18
VPS35-208ENST00000568612 DNAH17Q9UFH2 4485 aa1.45□□□□□ -2.18
VPS35-208ENST00000568612 SVEP1Q4LDE5 3571 aa1.45□□□□□ -2.18
VPS35-208ENST00000568612 M0QZ58 72 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms