RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 A0A087WTM6 91 aa8.14□□□□□ -1.11
VPS4A-204ENST00000566354 PRR4Q16378 134 aa8.14□□□□□ -1.11
VPS4A-204ENST00000566354 LINC00313P59037 77 aa8.12□□□□□ -1.11
VPS4A-204ENST00000566354 SPANXA2-OT1Q8N9U9 137 aa8.12□□□□□ -1.11
VPS4A-204ENST00000566354 H0Y9P7 68 aa8.12□□□□□ -1.11
VPS4A-204ENST00000566354 C9orf163Q8N9P6 203 aa8.12□□□□□ -1.11
VPS4A-204ENST00000566354 KMT2CQ8NEZ4 4911 aaKnown RBP8.11□□□□□ -1.11
VPS4A-204ENST00000566354 HECTD4Q9Y4D8 3996 aa8.11□□□□□ -1.11
VPS4A-204ENST00000566354 A8MU10 97 aa8.11□□□□□ -1.11
VPS4A-204ENST00000566354 RTL8CO15255 209 aa8.11□□□□□ -1.11
VPS4A-204ENST00000566354 A6NED7 52 aa8.1□□□□□ -1.11
VPS4A-204ENST00000566354 FAM229AH3BQW9 127 aa8.1□□□□□ -1.11
VPS4A-204ENST00000566354 PRR15LQ9BU68 103 aa8.08□□□□□ -1.12
VPS4A-204ENST00000566354 MOBPQ13875 183 aa8.08□□□□□ -1.12
VPS4A-204ENST00000566354 FAT2Q9NYQ8 4349 aa8.07□□□□□ -1.12
VPS4A-204ENST00000566354 DNAH11Q96DT5 4516 aa8.06□□□□□ -1.12
VPS4A-204ENST00000566354 PLA2G1BP04054 148 aaKnown RBP8.06□□□□□ -1.12
VPS4A-204ENST00000566354 KRTAP13-1Q8IUC0 172 aa8.06□□□□□ -1.12
VPS4A-204ENST00000566354 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
VPS4A-204ENST00000566354 RYR2Q92736 4967 aa8.05□□□□□ -1.12
VPS4A-204ENST00000566354 MMP24-AS1A0A0U1RRL7 71 aa8.04□□□□□ -1.12
VPS4A-204ENST00000566354 PANO1I0J062 215 aa8.01□□□□□ -1.13
VPS4A-204ENST00000566354 KRTAP10-2P60368 255 aa8.01□□□□□ -1.13
VPS4A-204ENST00000566354 DNAH5Q8TE73 4624 aa8.01□□□□□ -1.13
VPS4A-204ENST00000566354 PKD1P98161 4303 aa8.01□□□□□ -1.13
VPS4A-204ENST00000566354 IGLV5-52A0A0A0MRZ9 124 aa8.01□□□□□ -1.13
VPS4A-204ENST00000566354 TP53AIP1Q9HCN2 124 aa7.99□□□□□ -1.13
VPS4A-204ENST00000566354 Q96NJ1 140 aa7.98□□□□□ -1.13
VPS4A-204ENST00000566354 IGLV9-49A0A0B4J1Y8 123 aa7.98□□□□□ -1.13
VPS4A-204ENST00000566354 PLAC8Q9NZF1 115 aa7.98□□□□□ -1.13
VPS4A-204ENST00000566354 LINC01558Q9Y6Z2 57 aa7.98□□□□□ -1.13
VPS4A-204ENST00000566354 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
VPS4A-204ENST00000566354 KRTAP3-3Q9BYR6 98 aa7.97□□□□□ -1.13
VPS4A-204ENST00000566354 KRTAP3-2Q9BYR7 98 aa7.97□□□□□ -1.13
VPS4A-204ENST00000566354 IGLV7-46A0A075B6I9 117 aa7.97□□□□□ -1.13
VPS4A-204ENST00000566354 LINC00483Q53H64 154 aa7.97□□□□□ -1.13
VPS4A-204ENST00000566354 SPACA4Q8TDM5 124 aa7.97□□□□□ -1.13
VPS4A-204ENST00000566354 PKHD1P08F94 4074 aa7.94□□□□□ -1.14
VPS4A-204ENST00000566354 C8orf17Q9NRJ1 99 aa7.94□□□□□ -1.14
VPS4A-204ENST00000566354 ZNF706Q9Y5V0 76 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-204ENST00000566354 RYR3Q15413 4870 aa7.94□□□□□ -1.14
VPS4A-204ENST00000566354 COA5Q86WW8 74 aa7.92□□□□□ -1.14
VPS4A-204ENST00000566354 DNAH8Q96JB1 4490 aa7.91□□□□□ -1.14
VPS4A-204ENST00000566354 A0A1B0GVX0 72 aa7.91□□□□□ -1.14
VPS4A-204ENST00000566354 IGHV6-1A0A0B4J1U7 121 aa7.89□□□□□ -1.15
VPS4A-204ENST00000566354 CDK2AP2O75956 126 aa7.89□□□□□ -1.15
VPS4A-204ENST00000566354 KRTAP10-1P60331 282 aa7.89□□□□□ -1.15
VPS4A-204ENST00000566354 PCOTHQ58A44 107 aa7.89□□□□□ -1.15
VPS4A-204ENST00000566354 NOTCH2NLQ7Z3S9 236 aa7.87□□□□□ -1.15
VPS4A-204ENST00000566354 PSORS1C2Q9UIG4 136 aa7.87□□□□□ -1.15
VPS4A-204ENST00000566354 MRPL34Q9BQ48 92 aaKnown RBP7.86□□□□□ -1.15
VPS4A-204ENST00000566354 A0A1B0GVY2 172 aa7.86□□□□□ -1.15
VPS4A-204ENST00000566354 ZNF861PO60384 105 aa7.85□□□□□ -1.15
VPS4A-204ENST00000566354 LRP1BQ9NZR2 4599 aa7.85□□□□□ -1.15
VPS4A-204ENST00000566354 DYNC1H1Q14204 4646 aaKnown RBP7.84□□□□□ -1.15
VPS4A-204ENST00000566354 Q6ZSA8 131 aa7.84□□□□□ -1.15
VPS4A-204ENST00000566354 CIRBP-AS1Q8TBR5 109 aa7.83□□□□□ -1.16
VPS4A-204ENST00000566354 RETNLBQ9BQ08 111 aa7.83□□□□□ -1.16
VPS4A-204ENST00000566354 ANAPC11Q9NYG5 84 aa7.82□□□□□ -1.16
VPS4A-204ENST00000566354 PRAC1Q96KF2 57 aa7.81□□□□□ -1.16
VPS4A-204ENST00000566354 HRES1P13985 223 aa7.77□□□□□ -1.17
VPS4A-204ENST00000566354 LCE2DQ5TA82 110 aaPredicted RBP7.77□□□□□ -1.17
VPS4A-204ENST00000566354 SPAG11AQ6PDA7 123 aa7.77□□□□□ -1.17
VPS4A-204ENST00000566354 SPINK6Q6UWN8 80 aa7.74□□□□□ -1.17
VPS4A-204ENST00000566354 IGLV7-43P04211 117 aa7.73□□□□□ -1.17
VPS4A-204ENST00000566354 SPINK7P58062 85 aa7.73□□□□□ -1.17
VPS4A-204ENST00000566354 APOBP04114 4563 aaKnown RBP7.73□□□□□ -1.17
VPS4A-204ENST00000566354 KRTAP13-3Q3SY46 172 aa7.72□□□□□ -1.17
VPS4A-204ENST00000566354 Q5W150 140 aa7.72□□□□□ -1.17
VPS4A-204ENST00000566354 SSBP3-AS1Q7Z2R9 100 aa7.7□□□□□ -1.18
VPS4A-204ENST00000566354 VPS13BQ7Z7G8 4022 aa7.7□□□□□ -1.18
VPS4A-204ENST00000566354 FAT1Q14517 4588 aa7.66□□□□□ -1.18
VPS4A-204ENST00000566354 SMR3BP02814 79 aaPredicted RBP7.66□□□□□ -1.18
VPS4A-204ENST00000566354 ACYP2P14621 99 aa7.66□□□□□ -1.18
VPS4A-204ENST00000566354 EPPK1P58107 5090 aaKnown RBP7.65□□□□□ -1.18
VPS4A-204ENST00000566354 ADM2Q7Z4H4 148 aa7.65□□□□□ -1.18
VPS4A-204ENST00000566354 SPATA8Q6RVD6 105 aa7.63□□□□□ -1.19
VPS4A-204ENST00000566354 ROMO1P60602 79 aa7.61□□□□□ -1.19
VPS4A-204ENST00000566354 DMAC1Q96GE9 116 aa7.6□□□□□ -1.19
VPS4A-204ENST00000566354 CSAG1Q6PB30 78 aa7.58□□□□□ -1.2
VPS4A-204ENST00000566354 HSPG2P98160 4391 aa7.58□□□□□ -1.2
VPS4A-204ENST00000566354 KIAA1109Q2LD37 5005 aa7.57□□□□□ -1.2
VPS4A-204ENST00000566354 RYR1P21817 5038 aa7.56□□□□□ -1.2
VPS4A-204ENST00000566354 IGKV2-30P06310 120 aa7.55□□□□□ -1.2
VPS4A-204ENST00000566354 KRTAP10-4P60372 401 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-204ENST00000566354 KRTAP13-2Q52LG2 175 aa7.53□□□□□ -1.2
VPS4A-204ENST00000566354 KRTAP16-1A8MUX0 517 aa7.5□□□□□ -1.21
VPS4A-204ENST00000566354 KRTAP17-1Q9BYP8 105 aa7.49□□□□□ -1.21
VPS4A-204ENST00000566354 A0A1B0GU69 56 aa7.47□□□□□ -1.21
VPS4A-204ENST00000566354 KRTAP1-4P0C5Y4 121 aa7.47□□□□□ -1.21
VPS4A-204ENST00000566354 MIR22HGQ0VDD5 57 aa7.45□□□□□ -1.22
VPS4A-204ENST00000566354 Q5VSD8 79 aa7.45□□□□□ -1.22
VPS4A-204ENST00000566354 UQCR11O14957 56 aa7.43□□□□□ -1.22
VPS4A-204ENST00000566354 KRTAP25-1Q3LHN0 102 aa7.42□□□□□ -1.22
VPS4A-204ENST00000566354 IGKV2D-30A0A075B6S6 120 aa7.41□□□□□ -1.22
VPS4A-204ENST00000566354 PKHD1L1Q86WI1 4243 aa7.39□□□□□ -1.23
VPS4A-204ENST00000566354 FLG2Q5D862 2391 aaPredicted RBP7.38□□□□□ -1.23
VPS4A-204ENST00000566354 Q8N1X5 172 aa7.38□□□□□ -1.23
VPS4A-204ENST00000566354 SPINK1P00995 79 aa7.37□□□□□ -1.23
VPS4A-204ENST00000566354 LRP1Q07954 4544 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms