RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 HIST1H2BCP62807 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST2H2BEQ16778 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.37□□□□□ -1.87
VPS4A-203ENST00000564399 LYRM7Q5U5X0 104 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 ANKRD29Q8N6D5 301 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BHQ93079 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BNQ99877 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 HIST1H2BMQ99879 126 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 LINC00472Q9H8W2 130 aa3.37□□□□□ -1.87
VPS4A-203ENST00000564399 TRBV7-4A0A0J9YYF1 115 aa3.36□□□□□ -1.87
VPS4A-203ENST00000564399 A0A1B0GVX0 72 aa3.36□□□□□ -1.87
VPS4A-203ENST00000564399 KRTAP3-1Q9BYR8 98 aa3.36□□□□□ -1.87
VPS4A-203ENST00000564399 A0A1B0GV72 72 aa3.35□□□□□ -1.87
VPS4A-203ENST00000564399 H0YGX0 51 aa3.35□□□□□ -1.87
VPS4A-203ENST00000564399 H1FX-AS1Q4G0G2 97 aa3.35□□□□□ -1.87
VPS4A-203ENST00000564399 Q5VV11 94 aa3.35□□□□□ -1.87
VPS4A-203ENST00000564399 RAB37Q96AX2 223 aa3.35□□□□□ -1.87
VPS4A-203ENST00000564399 TRACP01848 142 aa3.34□□□□□ -1.87
VPS4A-203ENST00000564399 SNRPEP62304 92 aaKnown RBP3.34□□□□□ -1.87
VPS4A-203ENST00000564399 CCKP06307 115 aa3.33□□□□□ -1.88
VPS4A-203ENST00000564399 MT1BP07438 61 aa3.33□□□□□ -1.88
VPS4A-203ENST00000564399 HIST1H4GQ99525 98 aa3.33□□□□□ -1.88
VPS4A-203ENST00000564399 FAM236AA0A1B0GUQ0 79 aa3.32□□□□□ -1.88
VPS4A-203ENST00000564399 FAM236BA0A1B0GV22 79 aa3.32□□□□□ -1.88
VPS4A-203ENST00000564399 KRTAP10-5P60370 271 aa3.32□□□□□ -1.88
VPS4A-203ENST00000564399 HSBP1L1C9JCN9 74 aa3.31□□□□□ -1.88
VPS4A-203ENST00000564399 DSCR8Q96T75 97 aa3.31□□□□□ -1.88
VPS4A-203ENST00000564399 A0A1B0GX51 115 aa3.3□□□□□ -1.88
VPS4A-203ENST00000564399 VPS25Q9BRG1 176 aa3.3□□□□□ -1.88
VPS4A-203ENST00000564399 IGKV3D-7A0A0C4DH55 119 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 NDUFB1O75438 58 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 SPRR2EP22531 72 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 SPRR2BP35325 72 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 SPRR2AP35326 72 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 KRTAP2-2Q9BYT5 123 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 KRTAP2-1Q9BYU5 128 aa3.29□□□□□ -1.88
VPS4A-203ENST00000564399 J3KT08 172 aa3.28□□□□□ -1.88
VPS4A-203ENST00000564399 KRTAP19-8Q3LI54 63 aa3.28□□□□□ -1.88
VPS4A-203ENST00000564399 COA6Q5JTJ3 125 aaKnown RBP3.28□□□□□ -1.88
VPS4A-203ENST00000564399 IMUPQ9GZP8 106 aa3.28□□□□□ -1.88
VPS4A-203ENST00000564399 ORMDL1Q9P0S3 153 aa3.28□□□□□ -1.88
VPS4A-203ENST00000564399 DNAL4O96015 105 aa3.27□□□□□ -1.89
VPS4A-203ENST00000564399 SPRR2FQ96RM1 72 aa3.27□□□□□ -1.89
VPS4A-203ENST00000564399 H3BQ85 93 aa3.26□□□□□ -1.89
VPS4A-203ENST00000564399 C8orf17Q9NRJ1 99 aa3.26□□□□□ -1.89
VPS4A-203ENST00000564399 A0A0B4J2C4 111 aa3.25□□□□□ -1.89
VPS4A-203ENST00000564399 TMEM256-PLSCR3K7ERE1 68 aa3.25□□□□□ -1.89
VPS4A-203ENST00000564399 C5orf47Q569G3 176 aa3.25□□□□□ -1.89
VPS4A-203ENST00000564399 SPRR2GQ9BYE4 73 aa3.25□□□□□ -1.89
VPS4A-203ENST00000564399 Q6ZVQ6 151 aa3.24□□□□□ -1.89
VPS4A-203ENST00000564399 IGKV2D-30A0A075B6S6 120 aa3.23□□□□□ -1.89
VPS4A-203ENST00000564399 TRIAP1O43715 76 aa3.23□□□□□ -1.89
VPS4A-203ENST00000564399 IGKV2-30P06310 120 aa3.23□□□□□ -1.89
VPS4A-203ENST00000564399 PRO1854Q9UHT4 67 aa3.23□□□□□ -1.89
VPS4A-203ENST00000564399 KRTAP23-1A1A580 65 aa3.22□□□□□ -1.89
VPS4A-203ENST00000564399 COX8AP10176 69 aa3.22□□□□□ -1.89
VPS4A-203ENST00000564399 C2orf91Q6ZV80 131 aa3.22□□□□□ -1.89
VPS4A-203ENST00000564399 NDUFS5O43920 106 aa3.21□□□□□ -1.9
VPS4A-203ENST00000564399 RBM3P98179 157 aaKnown RBP3.21□□□□□ -1.9
VPS4A-203ENST00000564399 UBE2V1Q13404 147 aa3.21□□□□□ -1.9
VPS4A-203ENST00000564399 C21orf62-AS1Q17RA5 79 aa3.21□□□□□ -1.9
VPS4A-203ENST00000564399 S100A2P29034 98 aa3.2□□□□□ -1.9
VPS4A-203ENST00000564399 PSMB2P49721 201 aa3.2□□□□□ -1.9
VPS4A-203ENST00000564399 Q6ZQT0 140 aa3.2□□□□□ -1.9
VPS4A-203ENST00000564399 DLEU1O43261 78 aa3.19□□□□□ -1.9
VPS4A-203ENST00000564399 C4orf26Q17RF5 130 aa3.19□□□□□ -1.9
VPS4A-203ENST00000564399 CSAG1Q6PB30 78 aa3.19□□□□□ -1.9
VPS4A-203ENST00000564399 C7orf65Q6ZTY9 151 aa3.19□□□□□ -1.9
VPS4A-203ENST00000564399 MRPL34Q9BQ48 92 aaKnown RBP3.19□□□□□ -1.9
VPS4A-203ENST00000564399 C9JAW5 83 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 COX6CP09669 75 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 SPRR2DP22532 72 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 KLKP1Q107X0 134 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 LCE1AQ5T7P2 110 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 TMEM254Q8TBM7 123 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 C14orf144Q96I85 54 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 HIST1H2BLQ99880 126 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 HIGD1BQ9P298 99 aa3.18□□□□□ -1.9
VPS4A-203ENST00000564399 PRR15Q8IV56 129 aa3.17□□□□□ -1.9
VPS4A-203ENST00000564399 CEND1Q8N111 149 aa3.17□□□□□ -1.9
VPS4A-203ENST00000564399 HIST3H2BBQ8N257 126 aa3.17□□□□□ -1.9
VPS4A-203ENST00000564399 S4R3F8 94 aa3.17□□□□□ -1.9
VPS4A-203ENST00000564399 MMP24-AS1A0A0U1RRL7 71 aa3.16□□□□□ -1.9
VPS4A-203ENST00000564399 KRTAP8-1Q8IUC2 63 aa3.16□□□□□ -1.9
VPS4A-203ENST00000564399 hDV103S1A0JD37 113 aa3.15□□□□□ -1.91
VPS4A-203ENST00000564399 FXYD2P54710 66 aa3.15□□□□□ -1.91
VPS4A-203ENST00000564399 Q5W150 140 aa3.14□□□□□ -1.91
VPS4A-203ENST00000564399 LCA10Q71F78 164 aa3.13□□□□□ -1.91
VPS4A-203ENST00000564399 K7ERJ3 54 aa3.12□□□□□ -1.91
VPS4A-203ENST00000564399 BAALC-AS2P0C853 105 aa3.12□□□□□ -1.91
VPS4A-203ENST00000564399 SPATA45Q537H7 98 aa3.12□□□□□ -1.91
VPS4A-203ENST00000564399 PAM16Q9Y3D7 125 aa3.12□□□□□ -1.91
VPS4A-203ENST00000564399 A0A1B0GW54 56 aa3.11□□□□□ -1.91
VPS4A-203ENST00000564399 SCGB1C2P0DMR2 95 aa3.11□□□□□ -1.91
VPS4A-203ENST00000564399 NREPQ16612 68 aa3.11□□□□□ -1.91
VPS4A-203ENST00000564399 PRO2289Q9P1D8 64 aa3.11□□□□□ -1.91
VPS4A-203ENST00000564399 TMA7Q9Y2S6 64 aaKnown RBP3.11□□□□□ -1.91
VPS4A-203ENST00000564399 K7EQZ3 153 aa3.1□□□□□ -1.91
VPS4A-203ENST00000564399 CRIPTQ9P021 101 aa3.1□□□□□ -1.91
VPS4A-203ENST00000564399 S100A6P06703 90 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms