RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SPINK6Q6UWN8 80 aa8.12□□□□□ -1.11
CLK3-215ENST00000564353 MMP24-AS1A0A0U1RRL7 71 aa8.12□□□□□ -1.11
CLK3-215ENST00000564353 PRAC1Q96KF2 57 aa8.11□□□□□ -1.11
CLK3-215ENST00000564353 A0A087X002 238 aa8.1□□□□□ -1.11
CLK3-215ENST00000564353 NOTCH2NLQ7Z3S9 236 aa8.1□□□□□ -1.11
CLK3-215ENST00000564353 Q96NJ1 140 aa8.1□□□□□ -1.11
CLK3-215ENST00000564353 LY6G6CO95867 125 aa8.1□□□□□ -1.11
CLK3-215ENST00000564353 Q8N9P0 234 aaPredicted RBP8.1□□□□□ -1.11
CLK3-215ENST00000564353 IGLV5-52A0A0A0MRZ9 124 aa8.09□□□□□ -1.11
CLK3-215ENST00000564353 NDUFB1O75438 58 aa8.09□□□□□ -1.11
CLK3-215ENST00000564353 WWC2-AS2Q96NR7 200 aa8.07□□□□□ -1.12
CLK3-215ENST00000564353 CYP4F30PQ9H0H9 118 aa8.07□□□□□ -1.12
CLK3-215ENST00000564353 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
CLK3-215ENST00000564353 LIMD2Q9BT23 127 aa8.06□□□□□ -1.12
CLK3-215ENST00000564353 DNAH11Q96DT5 4516 aa8.04□□□□□ -1.12
CLK3-215ENST00000564353 ZNF861PO60384 105 aa8.03□□□□□ -1.12
CLK3-215ENST00000564353 C8orf17Q9NRJ1 99 aa8.02□□□□□ -1.12
CLK3-215ENST00000564353 LINC00313P59037 77 aa8.02□□□□□ -1.13
CLK3-215ENST00000564353 CDK2AP2O75956 126 aa8.02□□□□□ -1.13
CLK3-215ENST00000564353 C1orf134Q5TEV5 83 aa8.02□□□□□ -1.13
CLK3-215ENST00000564353 Q6ZR54 194 aa8.02□□□□□ -1.13
CLK3-215ENST00000564353 CDC42SE1Q9NRR8 79 aa8.02□□□□□ -1.13
CLK3-215ENST00000564353 LINC00483Q53H64 154 aa8.01□□□□□ -1.13
CLK3-215ENST00000564353 ADM2Q7Z4H4 148 aa8.01□□□□□ -1.13
CLK3-215ENST00000564353 KRTAP10-2P60368 255 aa8□□□□□ -1.13
CLK3-215ENST00000564353 LINC01554Q52M75 96 aa8□□□□□ -1.13
CLK3-215ENST00000564353 Q75L30 129 aa8□□□□□ -1.13
CLK3-215ENST00000564353 HYDINQ4G0P3 5121 aa8□□□□□ -1.13
CLK3-215ENST00000564353 PLAC8Q9NZF1 115 aa7.99□□□□□ -1.13
CLK3-215ENST00000564353 ALMS1Q8TCU4 4167 aa7.99□□□□□ -1.13
CLK3-215ENST00000564353 A0A1B0GVX0 72 aa7.98□□□□□ -1.13
CLK3-215ENST00000564353 RETNLBQ9BQ08 111 aa7.97□□□□□ -1.13
CLK3-215ENST00000564353 ZNF706Q9Y5V0 76 aaPredicted RBP7.97□□□□□ -1.13
CLK3-215ENST00000564353 DNAH5Q8TE73 4624 aa7.96□□□□□ -1.13
CLK3-215ENST00000564353 IGLV7-43P04211 117 aa7.95□□□□□ -1.14
CLK3-215ENST00000564353 LRP1BQ9NZR2 4599 aa7.95□□□□□ -1.14
CLK3-215ENST00000564353 LOC101927531A0A1B0GV80 90 aa7.93□□□□□ -1.14
CLK3-215ENST00000564353 COA5Q86WW8 74 aa7.93□□□□□ -1.14
CLK3-215ENST00000564353 MRPL34Q9BQ48 92 aaKnown RBP7.93□□□□□ -1.14
CLK3-215ENST00000564353 Q5W150 140 aa7.91□□□□□ -1.14
CLK3-215ENST00000564353 SPINK7P58062 85 aa7.91□□□□□ -1.14
CLK3-215ENST00000564353 H3BPC8 53 aa7.9□□□□□ -1.14
CLK3-215ENST00000564353 ASB16-AS1Q495Z4 193 aa7.89□□□□□ -1.15
CLK3-215ENST00000564353 SPANXA2-OT1Q8N9U9 137 aa7.89□□□□□ -1.15
CLK3-215ENST00000564353 SPAG11AQ6PDA7 123 aa7.89□□□□□ -1.15
CLK3-215ENST00000564353 TP53AIP1Q9HCN2 124 aa7.87□□□□□ -1.15
CLK3-215ENST00000564353 IGLV7-46A0A075B6I9 117 aa7.87□□□□□ -1.15
CLK3-215ENST00000564353 KRTAP10-1P60331 282 aa7.85□□□□□ -1.15
CLK3-215ENST00000564353 FAT2Q9NYQ8 4349 aa7.84□□□□□ -1.16
CLK3-215ENST00000564353 KRTAP13-2Q52LG2 175 aa7.82□□□□□ -1.16
CLK3-215ENST00000564353 VPS13BQ7Z7G8 4022 aa7.82□□□□□ -1.16
CLK3-215ENST00000564353 HRES1P13985 223 aa7.81□□□□□ -1.16
CLK3-215ENST00000564353 PKD1P98161 4303 aa7.8□□□□□ -1.16
CLK3-215ENST00000564353 PKHD1P08F94 4074 aa7.78□□□□□ -1.16
CLK3-215ENST00000564353 LINC01558Q9Y6Z2 57 aa7.75□□□□□ -1.17
CLK3-215ENST00000564353 SSBP3-AS1Q7Z2R9 100 aa7.74□□□□□ -1.17
CLK3-215ENST00000564353 PLA2G1BP04054 148 aaKnown RBP7.73□□□□□ -1.17
CLK3-215ENST00000564353 KRTAP13-3Q3SY46 172 aa7.71□□□□□ -1.17
CLK3-215ENST00000564353 SACSQ9NZJ4 4579 aa7.71□□□□□ -1.17
CLK3-215ENST00000564353 CSAG1Q6PB30 78 aa7.7□□□□□ -1.18
CLK3-215ENST00000564353 SMR3BP02814 79 aaPredicted RBP7.69□□□□□ -1.18
CLK3-215ENST00000564353 IGKV2D-30A0A075B6S6 120 aa7.68□□□□□ -1.18
CLK3-215ENST00000564353 IGKV2-30P06310 120 aa7.68□□□□□ -1.18
CLK3-215ENST00000564353 KRTAP1-4P0C5Y4 121 aa7.68□□□□□ -1.18
CLK3-215ENST00000564353 KRTAP21-3Q3LHN1 58 aa7.67□□□□□ -1.18
CLK3-215ENST00000564353 Q6ZSA8 131 aa7.66□□□□□ -1.18
CLK3-215ENST00000564353 TYMSOSQ8TAI1 123 aa7.64□□□□□ -1.19
CLK3-215ENST00000564353 FAT1Q14517 4588 aa7.63□□□□□ -1.19
CLK3-215ENST00000564353 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
CLK3-215ENST00000564353 KRTAP16-1A8MUX0 517 aa7.6□□□□□ -1.19
CLK3-215ENST00000564353 ACYP2P14621 99 aa7.6□□□□□ -1.19
CLK3-215ENST00000564353 KMT2CQ8NEZ4 4911 aaKnown RBP7.58□□□□□ -1.2
CLK3-215ENST00000564353 SPINK1P00995 79 aa7.56□□□□□ -1.2
CLK3-215ENST00000564353 DYNC1H1Q14204 4646 aaKnown RBP7.55□□□□□ -1.2
CLK3-215ENST00000564353 C9orf92A6NGG3 77 aa7.55□□□□□ -1.2
CLK3-215ENST00000564353 DMAC1Q96GE9 116 aa7.54□□□□□ -1.2
CLK3-215ENST00000564353 Q8N1X5 172 aa7.53□□□□□ -1.2
CLK3-215ENST00000564353 LINC00304Q8N9R0 145 aa7.49□□□□□ -1.21
CLK3-215ENST00000564353 A0A0A0MQY5 61 aa7.48□□□□□ -1.21
CLK3-215ENST00000564353 RYR2Q92736 4967 aa7.48□□□□□ -1.21
CLK3-215ENST00000564353 A0A1B0GU69 56 aa7.47□□□□□ -1.21
CLK3-215ENST00000564353 ROMO1P60602 79 aa7.47□□□□□ -1.21
CLK3-215ENST00000564353 APOBP04114 4563 aaKnown RBP7.42□□□□□ -1.22
CLK3-215ENST00000564353 MIR22HGQ0VDD5 57 aa7.41□□□□□ -1.22
CLK3-215ENST00000564353 SPATA8Q6RVD6 105 aa7.4□□□□□ -1.22
CLK3-215ENST00000564353 A0A1B0GVY2 172 aa7.37□□□□□ -1.23
CLK3-215ENST00000564353 LRP1Q07954 4544 aaKnown RBP7.36□□□□□ -1.23
CLK3-215ENST00000564353 RYR3Q15413 4870 aa7.35□□□□□ -1.23
CLK3-215ENST00000564353 P0C880 135 aa7.33□□□□□ -1.24
CLK3-215ENST00000564353 UQCR11O14957 56 aa7.32□□□□□ -1.24
CLK3-215ENST00000564353 FLG2Q5D862 2391 aaPredicted RBP7.3□□□□□ -1.24
CLK3-215ENST00000564353 PKHD1L1Q86WI1 4243 aa7.3□□□□□ -1.24
CLK3-215ENST00000564353 MYCBP2O75592 4640 aa7.29□□□□□ -1.24
CLK3-215ENST00000564353 KRTAP10-4P60372 401 aaPredicted RBP7.28□□□□□ -1.24
CLK3-215ENST00000564353 KRTAP25-1Q3LHN0 102 aa7.28□□□□□ -1.24
CLK3-215ENST00000564353 DMBT1Q9UGM3 2413 aaPredicted RBP7.25□□□□□ -1.25
CLK3-215ENST00000564353 KRTAP3-1Q9BYR8 98 aa7.24□□□□□ -1.25
CLK3-215ENST00000564353 CRIPTQ9P021 101 aa7.23□□□□□ -1.25
CLK3-215ENST00000564353 A8MUU9 505 aa7.21□□□□□ -1.26
CLK3-215ENST00000564353 C20orf166-AS1Q96NR2 134 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms