RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 LINC00643Q86TS7 51 aa9.47□□□□□ -0.89
CMTM3-208ENST00000564247 A8MWP4 228 aa9.44□□□□□ -0.9
CMTM3-208ENST00000564247 CXCL6P80162 114 aa9.44□□□□□ -0.9
CMTM3-208ENST00000564247 ATP5EP2Q5VTU8 51 aa9.43□□□□□ -0.9
CMTM3-208ENST00000564247 DSCR10P59022 87 aa9.42□□□□□ -0.9
CMTM3-208ENST00000564247 CDIP1Q9H305 208 aa9.42□□□□□ -0.9
CMTM3-208ENST00000564247 IGHV6-1A0A0B4J1U7 121 aa9.41□□□□□ -0.9
CMTM3-208ENST00000564247 IGKV3D-7A0A0C4DH55 119 aa9.41□□□□□ -0.9
CMTM3-208ENST00000564247 A0A1B0GVX0 72 aa9.41□□□□□ -0.9
CMTM3-208ENST00000564247 PRR15Q8IV56 129 aa9.39□□□□□ -0.91
CMTM3-208ENST00000564247 LINC00313P59037 77 aa9.38□□□□□ -0.91
CMTM3-208ENST00000564247 C8orf87E5RJ46 101 aa9.37□□□□□ -0.91
CMTM3-208ENST00000564247 K7EQZ3 153 aa9.37□□□□□ -0.91
CMTM3-208ENST00000564247 TPRXLQ17RH7 258 aa9.37□□□□□ -0.91
CMTM3-208ENST00000564247 C9orf92A6NGG3 77 aa9.35□□□□□ -0.91
CMTM3-208ENST00000564247 Q8N9L7 120 aa9.35□□□□□ -0.91
CMTM3-208ENST00000564247 KRTAP13-3Q3SY46 172 aa9.33□□□□□ -0.92
CMTM3-208ENST00000564247 HIST1H4AP62805 103 aaKnown RBP9.32□□□□□ -0.92
CMTM3-208ENST00000564247 C8orf17Q9NRJ1 99 aa9.32□□□□□ -0.92
CMTM3-208ENST00000564247 MUC2Q02817 5179 aa9.31□□□□□ -0.92
CMTM3-208ENST00000564247 MUC17Q685J3 4493 aa9.29□□□□□ -0.92
CMTM3-208ENST00000564247 NOTCH2NLQ7Z3S9 236 aa9.28□□□□□ -0.92
CMTM3-208ENST00000564247 MMP24-AS1A0A0U1RRL7 71 aa9.25□□□□□ -0.93
CMTM3-208ENST00000564247 hDV103S1A0JD37 113 aa9.25□□□□□ -0.93
CMTM3-208ENST00000564247 HCG22E2RYF7 251 aa9.25□□□□□ -0.93
CMTM3-208ENST00000564247 MT-ATP8P03928 68 aa9.25□□□□□ -0.93
CMTM3-208ENST00000564247 IMUPQ9GZP8 106 aa9.25□□□□□ -0.93
CMTM3-208ENST00000564247 CASC2Q6XLA1 102 aa9.24□□□□□ -0.93
CMTM3-208ENST00000564247 WFDC13Q8IUB5 93 aa9.23□□□□□ -0.93
CMTM3-208ENST00000564247 TMEM254Q8TBM7 123 aa9.23□□□□□ -0.93
CMTM3-208ENST00000564247 XP32Q5T750 250 aa9.21□□□□□ -0.94
CMTM3-208ENST00000564247 MRPL34Q9BQ48 92 aaKnown RBP9.21□□□□□ -0.94
CMTM3-208ENST00000564247 KRTAP16-1A8MUX0 517 aa9.2□□□□□ -0.94
CMTM3-208ENST00000564247 A0A087WVE0 104 aa9.19□□□□□ -0.94
CMTM3-208ENST00000564247 A8MUU9 505 aa9.16□□□□□ -0.94
CMTM3-208ENST00000564247 NDUFS5O43920 106 aa9.16□□□□□ -0.94
CMTM3-208ENST00000564247 Q75L30 129 aa9.16□□□□□ -0.94
CMTM3-208ENST00000564247 C20orf166-AS1Q96NR2 134 aa9.16□□□□□ -0.94
CMTM3-208ENST00000564247 A0A0U1RQV1 116 aa9.15□□□□□ -0.94
CMTM3-208ENST00000564247 Q8N9P0 234 aaPredicted RBP9.14□□□□□ -0.95
CMTM3-208ENST00000564247 RPL37P61927 97 aaKnown RBP9.13□□□□□ -0.95
CMTM3-208ENST00000564247 ATP11AUNQ6ZP68 121 aa9.11□□□□□ -0.95
CMTM3-208ENST00000564247 SCGB1A1P11684 91 aa9.09□□□□□ -0.95
CMTM3-208ENST00000564247 FAT4Q6V0I7 4981 aa9.08□□□□□ -0.96
CMTM3-208ENST00000564247 SEC61BP60468 96 aaKnown RBP9.08□□□□□ -0.96
CMTM3-208ENST00000564247 TP53AIP1Q9HCN2 124 aa9.07□□□□□ -0.96
CMTM3-208ENST00000564247 FAM236AA0A1B0GUQ0 79 aa9.04□□□□□ -0.96
CMTM3-208ENST00000564247 FAM236BA0A1B0GV22 79 aa9.04□□□□□ -0.96
CMTM3-208ENST00000564247 ZCCHC13Q8WW36 166 aaKnown RBP9.03□□□□□ -0.96
CMTM3-208ENST00000564247 PCOTHQ58A44 107 aa9.02□□□□□ -0.97
CMTM3-208ENST00000564247 UQCRQO14949 82 aa8.98□□□□□ -0.97
CMTM3-208ENST00000564247 SMIM20Q8N5G0 67 aa8.97□□□□□ -0.97
CMTM3-208ENST00000564247 ATOX1O00244 68 aa8.96□□□□□ -0.98
CMTM3-208ENST00000564247 LCE2AQ5TA79 106 aaPredicted RBP8.96□□□□□ -0.98
CMTM3-208ENST00000564247 KRTAP4-1Q9BYQ7 146 aa8.96□□□□□ -0.98
CMTM3-208ENST00000564247 OCR1Q9BZK8 76 aa8.95□□□□□ -0.98
CMTM3-208ENST00000564247 Q5W150 140 aa8.94□□□□□ -0.98
CMTM3-208ENST00000564247 TRAV7A0A075B6U4 112 aa8.9□□□□□ -0.98
CMTM3-208ENST00000564247 TRAV22A0A0B4J277 110 aa8.9□□□□□ -0.98
CMTM3-208ENST00000564247 C5orf47Q569G3 176 aa8.89□□□□□ -0.99
CMTM3-208ENST00000564247 H0Y9P7 68 aa8.88□□□□□ -0.99
CMTM3-208ENST00000564247 MP68P56378 58 aa8.87□□□□□ -0.99
CMTM3-208ENST00000564247 IGKV2D-30A0A075B6S6 120 aa8.83□□□□□ -1
CMTM3-208ENST00000564247 IGKV2-30P06310 120 aa8.83□□□□□ -1
CMTM3-208ENST00000564247 SPINK7P58062 85 aa8.83□□□□□ -1
CMTM3-208ENST00000564247 SERP2Q8N6R1 65 aa8.82□□□□□ -1
CMTM3-208ENST00000564247 LOC101927531A0A1B0GV80 90 aa8.81□□□□□ -1
CMTM3-208ENST00000564247 C7orf65Q6ZTY9 151 aa8.81□□□□□ -1
CMTM3-208ENST00000564247 H3BPC8 53 aa8.8□□□□□ -1
CMTM3-208ENST00000564247 LINC00208Q96KT6 92 aa8.8□□□□□ -1
CMTM3-208ENST00000564247 C1orf64Q8NEQ6 169 aa8.79□□□□□ -1
CMTM3-208ENST00000564247 ANAPC13Q9BS18 74 aa8.77□□□□□ -1.01
CMTM3-208ENST00000564247 CYP4F30PQ9H0H9 118 aa8.75□□□□□ -1.01
CMTM3-208ENST00000564247 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
CMTM3-208ENST00000564247 LCE2CQ5TA81 110 aa8.73□□□□□ -1.01
CMTM3-208ENST00000564247 COX7CP15954 63 aa8.72□□□□□ -1.01
CMTM3-208ENST00000564247 HRES1P13985 223 aa8.68□□□□□ -1.02
CMTM3-208ENST00000564247 C20orf197Q8N268 126 aa8.68□□□□□ -1.02
CMTM3-208ENST00000564247 RBM12B-AS1Q9P1G2 102 aa8.68□□□□□ -1.02
CMTM3-208ENST00000564247 KRTAP9-2Q9BYQ4 174 aa8.67□□□□□ -1.02
CMTM3-208ENST00000564247 SNURFQ9Y675 71 aa8.65□□□□□ -1.02
CMTM3-208ENST00000564247 MT1HP80294 61 aa8.62□□□□□ -1.03
CMTM3-208ENST00000564247 FAM236DA0A1B0GTK5 79 aa8.61□□□□□ -1.03
CMTM3-208ENST00000564247 FAM236CP0DP71 79 aa8.61□□□□□ -1.03
CMTM3-208ENST00000564247 KLKP1Q107X0 134 aa8.61□□□□□ -1.03
CMTM3-208ENST00000564247 C4orf26Q17RF5 130 aa8.6□□□□□ -1.03
CMTM3-208ENST00000564247 MPLKIPQ8TAP9 179 aa8.6□□□□□ -1.03
CMTM3-208ENST00000564247 COX6B2Q6YFQ2 88 aa8.59□□□□□ -1.03
CMTM3-208ENST00000564247 FLGP20930 4061 aaPredicted RBP8.53□□□□□ -1.04
CMTM3-208ENST00000564247 CCDC179H3BU77 68 aa8.53□□□□□ -1.04
CMTM3-208ENST00000564247 NDUFC1O43677 76 aa8.53□□□□□ -1.04
CMTM3-208ENST00000564247 LCE2DQ5TA82 110 aaPredicted RBP8.47□□□□□ -1.05
CMTM3-208ENST00000564247 H1FX-AS1Q4G0G2 97 aa8.46□□□□□ -1.06
CMTM3-208ENST00000564247 A8MUN3 132 aa8.45□□□□□ -1.06
CMTM3-208ENST00000564247 M0R2T5 61 aa8.45□□□□□ -1.06
CMTM3-208ENST00000564247 SPANXA2-OT1Q8N9U9 137 aa8.45□□□□□ -1.06
CMTM3-208ENST00000564247 LORP23490 312 aaPredicted RBP8.44□□□□□ -1.06
CMTM3-208ENST00000564247 KRTAP10-6P60371 365 aaPredicted RBP8.44□□□□□ -1.06
CMTM3-208ENST00000564247 KRTAP3-1Q9BYR8 98 aa8.44□□□□□ -1.06
CMTM3-208ENST00000564247 H7BZZ5 65 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms