RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KRTAP29-1A8MX34 341 aaPredicted RBP4.43□□□□□ -1.7
VPS39-204ENST00000561818 KRTAP1-4P0C5Y4 121 aa4.42□□□□□ -1.7
VPS39-204ENST00000561818 Q96NJ1 140 aa4.42□□□□□ -1.7
VPS39-204ENST00000561818 C8orf17Q9NRJ1 99 aa4.42□□□□□ -1.7
VPS39-204ENST00000561818 FAT2Q9NYQ8 4349 aa4.41□□□□□ -1.7
VPS39-204ENST00000561818 TRAV22A0A0B4J277 110 aa4.41□□□□□ -1.7
VPS39-204ENST00000561818 MMP24-AS1A0A0U1RRL7 71 aa4.41□□□□□ -1.7
VPS39-204ENST00000561818 HRCT1Q6UXD1 115 aa4.41□□□□□ -1.7
VPS39-204ENST00000561818 MRPL34Q9BQ48 92 aaKnown RBP4.41□□□□□ -1.7
VPS39-204ENST00000561818 DNAH8Q96JB1 4490 aa4.4□□□□□ -1.7
VPS39-204ENST00000561818 A0A0G2JQZ4 141 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 A0A0U1RQV1 116 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 FAM236DA0A1B0GTK5 79 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 FAM236CP0DP71 79 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 WFDC13Q8IUB5 93 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 LINC00304Q8N9R0 145 aa4.4□□□□□ -1.71
VPS39-204ENST00000561818 A0A087X002 238 aa4.39□□□□□ -1.71
VPS39-204ENST00000561818 IGHV6-1A0A0B4J1U7 121 aa4.39□□□□□ -1.71
VPS39-204ENST00000561818 ANAPC11Q9NYG5 84 aa4.39□□□□□ -1.71
VPS39-204ENST00000561818 DNAH11Q96DT5 4516 aa4.38□□□□□ -1.71
VPS39-204ENST00000561818 H7BZZ5 65 aa4.38□□□□□ -1.71
VPS39-204ENST00000561818 DEFB116Q30KQ4 102 aa4.38□□□□□ -1.71
VPS39-204ENST00000561818 KRTAP13-2Q52LG2 175 aa4.38□□□□□ -1.71
VPS39-204ENST00000561818 DNAH5Q8TE73 4624 aa4.37□□□□□ -1.71
VPS39-204ENST00000561818 PKD1P98161 4303 aa4.37□□□□□ -1.71
VPS39-204ENST00000561818 LINC00313P59037 77 aa4.37□□□□□ -1.71
VPS39-204ENST00000561818 SPANXA2-OT1Q8N9U9 137 aa4.37□□□□□ -1.71
VPS39-204ENST00000561818 SRRM2Q9UQ35 2752 aaKnown RBP4.36□□□□□ -1.71
VPS39-204ENST00000561818 LOC101927531A0A1B0GV80 90 aa4.36□□□□□ -1.71
VPS39-204ENST00000561818 H0Y9P7 68 aa4.36□□□□□ -1.71
VPS39-204ENST00000561818 SACSQ9NZJ4 4579 aa4.36□□□□□ -1.71
VPS39-204ENST00000561818 KRTAP4-8A0A0G2JLE6 195 aa4.35□□□□□ -1.71
VPS39-204ENST00000561818 NDUFS5O43920 106 aa4.35□□□□□ -1.71
VPS39-204ENST00000561818 C1orf195Q5TG92 126 aa4.35□□□□□ -1.71
VPS39-204ENST00000561818 SERP1Q9Y6X1 66 aa4.35□□□□□ -1.71
VPS39-204ENST00000561818 ZCCHC13Q8WW36 166 aaKnown RBP4.34□□□□□ -1.71
VPS39-204ENST00000561818 SNURFQ9Y675 71 aa4.34□□□□□ -1.71
VPS39-204ENST00000561818 C1orf64Q8NEQ6 169 aa4.33□□□□□ -1.72
VPS39-204ENST00000561818 HYDINQ4G0P3 5121 aa4.33□□□□□ -1.72
VPS39-204ENST00000561818 Q8N9P0 234 aaPredicted RBP4.32□□□□□ -1.72
VPS39-204ENST00000561818 LINC00208Q96KT6 92 aa4.32□□□□□ -1.72
VPS39-204ENST00000561818 VPS13BQ7Z7G8 4022 aa4.31□□□□□ -1.72
VPS39-204ENST00000561818 SMR3BP02814 79 aaPredicted RBP4.31□□□□□ -1.72
VPS39-204ENST00000561818 KRTAP10-4P60372 401 aaPredicted RBP4.31□□□□□ -1.72
VPS39-204ENST00000561818 FP248Q71RG6 208 aaPredicted RBP4.31□□□□□ -1.72
VPS39-204ENST00000561818 CYP4F30PQ9H0H9 118 aa4.31□□□□□ -1.72
VPS39-204ENST00000561818 PKHD1P08F94 4074 aa4.31□□□□□ -1.72
VPS39-204ENST00000561818 PRR26Q8N8Z3 221 aa4.3□□□□□ -1.72
VPS39-204ENST00000561818 Q5VSD8 79 aa4.29□□□□□ -1.72
VPS39-204ENST00000561818 LRP1BQ9NZR2 4599 aa4.29□□□□□ -1.72
VPS39-204ENST00000561818 RYR2Q92736 4967 aa4.28□□□□□ -1.72
VPS39-204ENST00000561818 SMIM26A0A096LP01 95 aa4.27□□□□□ -1.73
VPS39-204ENST00000561818 CYSTM1Q9H1C7 97 aa4.27□□□□□ -1.73
VPS39-204ENST00000561818 IGLV7-46A0A075B6I9 117 aa4.26□□□□□ -1.73
VPS39-204ENST00000561818 H3BS24 57 aa4.26□□□□□ -1.73
VPS39-204ENST00000561818 Q8N1X5 172 aa4.26□□□□□ -1.73
VPS39-204ENST00000561818 V9GYY9 64 aa4.26□□□□□ -1.73
VPS39-204ENST00000561818 DYNC1H1Q14204 4646 aaKnown RBP4.26□□□□□ -1.73
VPS39-204ENST00000561818 OXTP01178 125 aa4.25□□□□□ -1.73
VPS39-204ENST00000561818 LCE1DQ5T752 114 aa4.23□□□□□ -1.73
VPS39-204ENST00000561818 KRTAP16-1A8MUX0 517 aa4.22□□□□□ -1.73
VPS39-204ENST00000561818 KRTAP10-8P60410 259 aa4.22□□□□□ -1.73
VPS39-204ENST00000561818 C7orf65Q6ZTY9 151 aa4.22□□□□□ -1.73
VPS39-204ENST00000561818 C20orf166-AS1Q96NR2 134 aa4.22□□□□□ -1.73
VPS39-204ENST00000561818 A8MUN3 132 aa4.21□□□□□ -1.74
VPS39-204ENST00000561818 IGKV2-30P06310 120 aa4.21□□□□□ -1.74
VPS39-204ENST00000561818 KRTAP13-3Q3SY46 172 aa4.21□□□□□ -1.74
VPS39-204ENST00000561818 APOBP04114 4563 aaKnown RBP4.21□□□□□ -1.74
VPS39-204ENST00000561818 KMT2CQ8NEZ4 4911 aaKnown RBP4.2□□□□□ -1.74
VPS39-204ENST00000561818 Q75L30 129 aa4.2□□□□□ -1.74
VPS39-204ENST00000561818 NOTCH2NLQ7Z3S9 236 aa4.2□□□□□ -1.74
VPS39-204ENST00000561818 A8MUU9 505 aa4.19□□□□□ -1.74
VPS39-204ENST00000561818 ACYP2P14621 99 aa4.19□□□□□ -1.74
VPS39-204ENST00000561818 Q5W150 140 aa4.19□□□□□ -1.74
VPS39-204ENST00000561818 KRTAP4-7Q9BYR0 210 aa4.19□□□□□ -1.74
VPS39-204ENST00000561818 LCE4AQ5TA78 99 aa4.17□□□□□ -1.74
VPS39-204ENST00000561818 PCOTHQ58A44 107 aa4.16□□□□□ -1.74
VPS39-204ENST00000561818 PKHD1L1Q86WI1 4243 aa4.16□□□□□ -1.74
VPS39-204ENST00000561818 SPTSSBQ8NFR3 76 aa4.15□□□□□ -1.75
VPS39-204ENST00000561818 DMAC1Q96GE9 116 aa4.15□□□□□ -1.75
VPS39-204ENST00000561818 Q1T7F1 81 aa4.14□□□□□ -1.75
VPS39-204ENST00000561818 ATP11AUNQ6ZP68 121 aa4.14□□□□□ -1.75
VPS39-204ENST00000561818 CHKB-CPT1BH3BT56 60 aa4.13□□□□□ -1.75
VPS39-204ENST00000561818 COA5Q86WW8 74 aa4.13□□□□□ -1.75
VPS39-204ENST00000561818 IGKV2D-30A0A075B6S6 120 aa4.12□□□□□ -1.75
VPS39-204ENST00000561818 HRES1P13985 223 aa4.12□□□□□ -1.75
VPS39-204ENST00000561818 FLG2Q5D862 2391 aaPredicted RBP4.12□□□□□ -1.75
VPS39-204ENST00000561818 TPRXLQ17RH7 258 aa4.11□□□□□ -1.75
VPS39-204ENST00000561818 HSPG2P98160 4391 aa4.1□□□□□ -1.75
VPS39-204ENST00000561818 C4orf26Q17RF5 130 aa4.1□□□□□ -1.75
VPS39-204ENST00000561818 KRTAP4-9Q9BYQ8 210 aa4.1□□□□□ -1.75
VPS39-204ENST00000561818 FAT1Q14517 4588 aa4.1□□□□□ -1.75
VPS39-204ENST00000561818 KRTAP9-7A8MTY7 169 aa4.09□□□□□ -1.75
VPS39-204ENST00000561818 RPL37P61927 97 aaKnown RBP4.09□□□□□ -1.75
VPS39-204ENST00000561818 PRR4Q16378 134 aa4.09□□□□□ -1.75
VPS39-204ENST00000561818 PRR15LQ9BU68 103 aa4.09□□□□□ -1.75
VPS39-204ENST00000561818 RYR1P21817 5038 aa4.08□□□□□ -1.76
VPS39-204ENST00000561818 C9orf92A6NGG3 77 aa4.08□□□□□ -1.76
VPS39-204ENST00000561818 MT1HL1P0DM35 61 aa4.07□□□□□ -1.76
VPS39-204ENST00000561818 KRTAP19-4Q3LI73 84 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms