RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 COX6CP09669 75 aa9.48□□□□□ -0.89
VPS35-202ENST00000561713 H3BQ85 93 aa9.46□□□□□ -0.9
VPS35-202ENST00000561713 UBE2V1Q13404 147 aa9.45□□□□□ -0.9
VPS35-202ENST00000561713 MPLKIPQ8TAP9 179 aa9.45□□□□□ -0.9
VPS35-202ENST00000561713 KRTAP9-3Q9BYQ3 159 aa9.45□□□□□ -0.9
VPS35-202ENST00000561713 RBM12B-AS1Q9P1G2 102 aa9.43□□□□□ -0.9
VPS35-202ENST00000561713 A0A1B0GVX0 72 aa9.42□□□□□ -0.9
VPS35-202ENST00000561713 UQCR10Q9UDW1 63 aa9.42□□□□□ -0.9
VPS35-202ENST00000561713 KRTAP10-10P60014 251 aa9.41□□□□□ -0.9
VPS35-202ENST00000561713 TMA7Q9Y2S6 64 aaKnown RBP9.4□□□□□ -0.9
VPS35-202ENST00000561713 SCGB1C2P0DMR2 95 aa9.39□□□□□ -0.91
VPS35-202ENST00000561713 C8orf87E5RJ46 101 aa9.38□□□□□ -0.91
VPS35-202ENST00000561713 RBM3P98179 157 aaKnown RBP9.38□□□□□ -0.91
VPS35-202ENST00000561713 DSCR8Q96T75 97 aa9.37□□□□□ -0.91
VPS35-202ENST00000561713 ZCCHC13Q8WW36 166 aaKnown RBP9.34□□□□□ -0.91
VPS35-202ENST00000561713 BAALC-AS2P0C853 105 aa9.32□□□□□ -0.92
VPS35-202ENST00000561713 NAA38Q9BRA0 125 aaKnown RBP9.32□□□□□ -0.92
VPS35-202ENST00000561713 C9JAW5 83 aa9.3□□□□□ -0.92
VPS35-202ENST00000561713 Q6ZQT0 140 aa9.29□□□□□ -0.92
VPS35-202ENST00000561713 SPINK7P58062 85 aa9.28□□□□□ -0.92
VPS35-202ENST00000561713 J3KT08 172 aa9.27□□□□□ -0.93
VPS35-202ENST00000561713 KRTAP19-6Q3LI70 58 aa9.24□□□□□ -0.93
VPS35-202ENST00000561713 C8orf17Q9NRJ1 99 aa9.24□□□□□ -0.93
VPS35-202ENST00000561713 WFDC13Q8IUB5 93 aa9.23□□□□□ -0.93
VPS35-202ENST00000561713 NDUFB1O75438 58 aa9.22□□□□□ -0.93
VPS35-202ENST00000561713 MTURNQ8N3F0 131 aa9.22□□□□□ -0.93
VPS35-202ENST00000561713 Q8N9P0 234 aaPredicted RBP9.22□□□□□ -0.93
VPS35-202ENST00000561713 LINC00846Q9NV44 126 aa9.22□□□□□ -0.93
VPS35-202ENST00000561713 ATXN8Q156A1 80 aa9.21□□□□□ -0.94
VPS35-202ENST00000561713 IGKV3D-7A0A0C4DH55 119 aa9.2□□□□□ -0.94
VPS35-202ENST00000561713 A8MWP4 228 aa9.2□□□□□ -0.94
VPS35-202ENST00000561713 LYRM7Q5U5X0 104 aa9.2□□□□□ -0.94
VPS35-202ENST00000561713 C14orf132Q9NPU4 83 aa9.2□□□□□ -0.94
VPS35-202ENST00000561713 C21orf62-AS1Q17RA5 79 aa9.19□□□□□ -0.94
VPS35-202ENST00000561713 LOC110117498A0A087WWA1 95 aa9.18□□□□□ -0.94
VPS35-202ENST00000561713 JMJD7-PLA2G4BH0Y9G9 81 aa9.15□□□□□ -0.94
VPS35-202ENST00000561713 M0R143 59 aa9.15□□□□□ -0.94
VPS35-202ENST00000561713 Q6ZVQ6 151 aa9.14□□□□□ -0.95
VPS35-202ENST00000561713 MMP24-AS1A0A0U1RRL7 71 aa9.1□□□□□ -0.95
VPS35-202ENST00000561713 PRR15Q8IV56 129 aa9.1□□□□□ -0.95
VPS35-202ENST00000561713 KRTAP6-3Q3LI67 103 aa9.09□□□□□ -0.95
VPS35-202ENST00000561713 PDE6GP18545 87 aa9.07□□□□□ -0.96
VPS35-202ENST00000561713 A0A1B0GW54 56 aa9.06□□□□□ -0.96
VPS35-202ENST00000561713 NREPQ16612 68 aa9.05□□□□□ -0.96
VPS35-202ENST00000561713 TMEM254Q8TBM7 123 aa9.05□□□□□ -0.96
VPS35-202ENST00000561713 MRPL34Q9BQ48 92 aaKnown RBP9.05□□□□□ -0.96
VPS35-202ENST00000561713 K7EQZ3 153 aa9.04□□□□□ -0.96
VPS35-202ENST00000561713 BATFQ16520 125 aa9.04□□□□□ -0.96
VPS35-202ENST00000561713 NDUFS5O43920 106 aa9.02□□□□□ -0.97
VPS35-202ENST00000561713 hDV103S1A0JD37 113 aa8.99□□□□□ -0.97
VPS35-202ENST00000561713 IGKV2D-30A0A075B6S6 120 aa8.97□□□□□ -0.97
VPS35-202ENST00000561713 IGKV2-30P06310 120 aa8.97□□□□□ -0.97
VPS35-202ENST00000561713 SMIM6P0DI80 62 aa8.97□□□□□ -0.97
VPS35-202ENST00000561713 H1FX-AS1Q4G0G2 97 aa8.95□□□□□ -0.98
VPS35-202ENST00000561713 NEBP20929 6669 aa8.92□□□□□ -0.98
VPS35-202ENST00000561713 Q5W150 140 aa8.92□□□□□ -0.98
VPS35-202ENST00000561713 Q8N9L7 120 aa8.92□□□□□ -0.98
VPS35-202ENST00000561713 H3BT86 120 aa8.91□□□□□ -0.98
VPS35-202ENST00000561713 BPY2O14599 106 aa8.9□□□□□ -0.98
VPS35-202ENST00000561713 TSTD3H0UI37 97 aa8.89□□□□□ -0.99
VPS35-202ENST00000561713 C7orf65Q6ZTY9 151 aa8.88□□□□□ -0.99
VPS35-202ENST00000561713 MUC12Q9UKN1 5478 aa8.87□□□□□ -0.99
VPS35-202ENST00000561713 C9orf118A6NHY6 69 aa8.87□□□□□ -0.99
VPS35-202ENST00000561713 TAX1BP3O14907 124 aa8.87□□□□□ -0.99
VPS35-202ENST00000561713 A0A1W2PPM0 123 aa8.86□□□□□ -0.99
VPS35-202ENST00000561713 HCG22E2RYF7 251 aa8.84□□□□□ -0.99
VPS35-202ENST00000561713 CASC2Q6XLA1 102 aa8.83□□□□□ -1
VPS35-202ENST00000561713 C4orf26Q17RF5 130 aa8.81□□□□□ -1
VPS35-202ENST00000561713 SMCPP49901 116 aaPredicted RBP8.75□□□□□ -1.01
VPS35-202ENST00000561713 SPCS1Q9Y6A9 102 aa8.74□□□□□ -1.01
VPS35-202ENST00000561713 C5orf47Q569G3 176 aa8.72□□□□□ -1.01
VPS35-202ENST00000561713 CXCL6P80162 114 aa8.7□□□□□ -1.02
VPS35-202ENST00000561713 FAM236AA0A1B0GUQ0 79 aa8.67□□□□□ -1.02
VPS35-202ENST00000561713 FAM236BA0A1B0GV22 79 aa8.67□□□□□ -1.02
VPS35-202ENST00000561713 LOC105371267A0A1B0GV96 52 aa8.67□□□□□ -1.02
VPS35-202ENST00000561713 KRTAP20-1Q3LI63 56 aa8.66□□□□□ -1.02
VPS35-202ENST00000561713 KRTAP3-1Q9BYR8 98 aa8.66□□□□□ -1.02
VPS35-202ENST00000561713 A6NN06 94 aa8.64□□□□□ -1.03
VPS35-202ENST00000561713 S4R3F8 94 aa8.63□□□□□ -1.03
VPS35-202ENST00000561713 UBL5Q9BZL1 73 aa8.62□□□□□ -1.03
VPS35-202ENST00000561713 PRO0461Q9UI25 63 aa8.62□□□□□ -1.03
VPS35-202ENST00000561713 MDN1Q9NU22 5596 aa8.58□□□□□ -1.04
VPS35-202ENST00000561713 MT1BP07438 61 aa8.58□□□□□ -1.04
VPS35-202ENST00000561713 LCA10Q71F78 164 aa8.58□□□□□ -1.04
VPS35-202ENST00000561713 C1orf64Q8NEQ6 169 aa8.58□□□□□ -1.04
VPS35-202ENST00000561713 K7EP34 96 aa8.54□□□□□ -1.04
VPS35-202ENST00000561713 KMT2DO14686 5537 aa8.53□□□□□ -1.04
VPS35-202ENST00000561713 CSAG1Q6PB30 78 aa8.52□□□□□ -1.05
VPS35-202ENST00000561713 COL5A1-AS1Q5SY13 56 aa8.51□□□□□ -1.05
VPS35-202ENST00000561713 Q5VV11 94 aa8.51□□□□□ -1.05
VPS35-202ENST00000561713 SPRR2GQ9BYE4 73 aa8.49□□□□□ -1.05
VPS35-202ENST00000561713 KRTAP5-9P26371 169 aa8.48□□□□□ -1.05
VPS35-202ENST00000561713 KRTAP19-8Q3LI54 63 aa8.48□□□□□ -1.05
VPS35-202ENST00000561713 KRTAP10-5P60370 271 aa8.45□□□□□ -1.06
VPS35-202ENST00000561713 TP53AIP1Q9HCN2 124 aa8.44□□□□□ -1.06
VPS35-202ENST00000561713 KRTAP3-3Q9BYR6 98 aa8.43□□□□□ -1.06
VPS35-202ENST00000561713 A0A087WVE0 104 aa8.42□□□□□ -1.06
VPS35-202ENST00000561713 KLKP1Q107X0 134 aa8.42□□□□□ -1.06
VPS35-202ENST00000561713 ETDBQ3ZM63 59 aa8.38□□□□□ -1.07
VPS35-202ENST00000561713 CYP4F30PQ9H0H9 118 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms