RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KRTAP9-6A0A140TA67 174 aa6.76□□□□□ -1.33
LDLR-212ENST00000560467 ATP5EP2Q5VTU8 51 aa6.76□□□□□ -1.33
LDLR-212ENST00000560467 NDUFB1O75438 58 aa6.75□□□□□ -1.33
LDLR-212ENST00000560467 MT-ATP8P03928 68 aa6.75□□□□□ -1.33
LDLR-212ENST00000560467 ASB16-AS1Q495Z4 193 aa6.74□□□□□ -1.33
LDLR-212ENST00000560467 IGKV4-1P06312 121 aa6.72□□□□□ -1.33
LDLR-212ENST00000560467 CXCL6P80162 114 aa6.72□□□□□ -1.33
LDLR-212ENST00000560467 RETNLBQ9BQ08 111 aa6.7□□□□□ -1.34
LDLR-212ENST00000560467 ANAPC13Q9BS18 74 aa6.7□□□□□ -1.34
LDLR-212ENST00000560467 MUC17Q685J3 4493 aa6.7□□□□□ -1.34
LDLR-212ENST00000560467 LINC00472Q9H8W2 130 aa6.69□□□□□ -1.34
LDLR-212ENST00000560467 IGKV3D-7A0A0C4DH55 119 aa6.68□□□□□ -1.34
LDLR-212ENST00000560467 DEFB116Q30KQ4 102 aa6.68□□□□□ -1.34
LDLR-212ENST00000560467 HIST1H4AP62805 103 aaKnown RBP6.67□□□□□ -1.34
LDLR-212ENST00000560467 C1orf195Q5TG92 126 aa6.67□□□□□ -1.34
LDLR-212ENST00000560467 A8MWP4 228 aa6.66□□□□□ -1.34
LDLR-212ENST00000560467 FP248Q71RG6 208 aaPredicted RBP6.63□□□□□ -1.35
LDLR-212ENST00000560467 IGHV6-1A0A0B4J1U7 121 aa6.62□□□□□ -1.35
LDLR-212ENST00000560467 PRR15Q8IV56 129 aa6.62□□□□□ -1.35
LDLR-212ENST00000560467 Q96NJ1 140 aa6.62□□□□□ -1.35
LDLR-212ENST00000560467 IGLV7-46A0A075B6I9 117 aa6.61□□□□□ -1.35
LDLR-212ENST00000560467 A0A1B0GVX0 72 aa6.61□□□□□ -1.35
LDLR-212ENST00000560467 TPRXLQ17RH7 258 aa6.61□□□□□ -1.35
LDLR-212ENST00000560467 C8orf87E5RJ46 101 aa6.6□□□□□ -1.35
LDLR-212ENST00000560467 DSCR10P59022 87 aa6.6□□□□□ -1.35
LDLR-212ENST00000560467 K7EQZ3 153 aa6.58□□□□□ -1.36
LDLR-212ENST00000560467 ATOX1O00244 68 aa6.58□□□□□ -1.36
LDLR-212ENST00000560467 LINC00313P59037 77 aa6.58□□□□□ -1.36
LDLR-212ENST00000560467 Q8N9L7 120 aa6.58□□□□□ -1.36
LDLR-212ENST00000560467 FAM236AA0A1B0GUQ0 79 aa6.55□□□□□ -1.36
LDLR-212ENST00000560467 FAM236BA0A1B0GV22 79 aa6.55□□□□□ -1.36
LDLR-212ENST00000560467 HCG22E2RYF7 251 aa6.55□□□□□ -1.36
LDLR-212ENST00000560467 CASC2Q6XLA1 102 aa6.55□□□□□ -1.36
LDLR-212ENST00000560467 UQCRQO14949 82 aa6.54□□□□□ -1.36
LDLR-212ENST00000560467 C8orf17Q9NRJ1 99 aa6.54□□□□□ -1.36
LDLR-212ENST00000560467 hDV103S1A0JD37 113 aa6.53□□□□□ -1.36
LDLR-212ENST00000560467 A0A087WVE0 104 aa6.51□□□□□ -1.37
LDLR-212ENST00000560467 WFDC13Q8IUB5 93 aa6.51□□□□□ -1.37
LDLR-212ENST00000560467 NDUFS5O43920 106 aa6.5□□□□□ -1.37
LDLR-212ENST00000560467 SMIM20Q8N5G0 67 aa6.5□□□□□ -1.37
LDLR-212ENST00000560467 LCE2DQ5TA82 110 aaPredicted RBP6.49□□□□□ -1.37
LDLR-212ENST00000560467 TMEM254Q8TBM7 123 aa6.49□□□□□ -1.37
LDLR-212ENST00000560467 KRTAP4-1Q9BYQ7 146 aa6.49□□□□□ -1.37
LDLR-212ENST00000560467 MMP24-AS1A0A0U1RRL7 71 aa6.48□□□□□ -1.37
LDLR-212ENST00000560467 C9orf92A6NGG3 77 aa6.48□□□□□ -1.37
LDLR-212ENST00000560467 COX7CP15954 63 aa6.48□□□□□ -1.37
LDLR-212ENST00000560467 KRTAP13-3Q3SY46 172 aa6.48□□□□□ -1.37
LDLR-212ENST00000560467 MRPL34Q9BQ48 92 aaKnown RBP6.48□□□□□ -1.37
LDLR-212ENST00000560467 SERP2Q8N6R1 65 aa6.46□□□□□ -1.38
LDLR-212ENST00000560467 TP53AIP1Q9HCN2 124 aa6.46□□□□□ -1.38
LDLR-212ENST00000560467 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
LDLR-212ENST00000560467 CCDC179H3BU77 68 aa6.45□□□□□ -1.38
LDLR-212ENST00000560467 FSIP2Q5CZC0 6907 aa6.45□□□□□ -1.38
LDLR-212ENST00000560467 NOTCH2NLQ7Z3S9 236 aa6.43□□□□□ -1.38
LDLR-212ENST00000560467 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.38
LDLR-212ENST00000560467 ATP11AUNQ6ZP68 121 aa6.4□□□□□ -1.38
LDLR-212ENST00000560467 Q8N9P0 234 aaPredicted RBP6.39□□□□□ -1.39
LDLR-212ENST00000560467 Q75L30 129 aa6.38□□□□□ -1.39
LDLR-212ENST00000560467 TRAV7A0A075B6U4 112 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 KRTAP16-1A8MUX0 517 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 MP68P56378 58 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 TMEM258P61165 79 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 LCE2CQ5TA81 110 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 C20orf166-AS1Q96NR2 134 aa6.37□□□□□ -1.39
LDLR-212ENST00000560467 C5orf47Q569G3 176 aa6.36□□□□□ -1.39
LDLR-212ENST00000560467 A8MUU9 505 aa6.35□□□□□ -1.39
LDLR-212ENST00000560467 XP32Q5T750 250 aa6.35□□□□□ -1.39
LDLR-212ENST00000560467 RPS28P62857 69 aaKnown RBP6.34□□□□□ -1.39
LDLR-212ENST00000560467 KRTAP19-2Q3LHN2 52 aa6.33□□□□□ -1.4
LDLR-212ENST00000560467 OCR1Q9BZK8 76 aa6.33□□□□□ -1.4
LDLR-212ENST00000560467 TRAV22A0A0B4J277 110 aa6.32□□□□□ -1.4
LDLR-212ENST00000560467 NDUFC1O43677 76 aa6.32□□□□□ -1.4
LDLR-212ENST00000560467 RPL37P61927 97 aaKnown RBP6.32□□□□□ -1.4
LDLR-212ENST00000560467 ZCCHC13Q8WW36 166 aaKnown RBP6.32□□□□□ -1.4
LDLR-212ENST00000560467 MT1HP80294 61 aa6.3□□□□□ -1.4
LDLR-212ENST00000560467 H0Y9P7 68 aa6.29□□□□□ -1.4
LDLR-212ENST00000560467 H3BPC8 53 aa6.29□□□□□ -1.4
LDLR-212ENST00000560467 KLKP1Q107X0 134 aa6.28□□□□□ -1.4
LDLR-212ENST00000560467 ATP5EP56381 51 aaPredicted RBP6.27□□□□□ -1.41
LDLR-212ENST00000560467 C1orf64Q8NEQ6 169 aa6.26□□□□□ -1.41
LDLR-212ENST00000560467 LOC101927531A0A1B0GV80 90 aa6.25□□□□□ -1.41
LDLR-212ENST00000560467 PCOTHQ58A44 107 aa6.25□□□□□ -1.41
LDLR-212ENST00000560467 LINC00208Q96KT6 92 aa6.25□□□□□ -1.41
LDLR-212ENST00000560467 LORP23490 312 aaPredicted RBP6.23□□□□□ -1.41
LDLR-212ENST00000560467 Q5W150 140 aa6.23□□□□□ -1.41
LDLR-212ENST00000560467 KRTAP10-6P60371 365 aaPredicted RBP6.22□□□□□ -1.41
LDLR-212ENST00000560467 C20orf197Q8N268 126 aa6.22□□□□□ -1.41
LDLR-212ENST00000560467 IGKV2D-30A0A075B6S6 120 aa6.21□□□□□ -1.42
LDLR-212ENST00000560467 IGKV2-30P06310 120 aa6.21□□□□□ -1.42
LDLR-212ENST00000560467 C7orf65Q6ZTY9 151 aa6.21□□□□□ -1.42
LDLR-212ENST00000560467 FAM236DA0A1B0GTK5 79 aa6.18□□□□□ -1.42
LDLR-212ENST00000560467 FAM236CP0DP71 79 aa6.18□□□□□ -1.42
LDLR-212ENST00000560467 SPINK7P58062 85 aa6.18□□□□□ -1.42
LDLR-212ENST00000560467 H7BZZ5 65 aa6.17□□□□□ -1.42
LDLR-212ENST00000560467 CYP4F30PQ9H0H9 118 aa6.16□□□□□ -1.42
LDLR-212ENST00000560467 SNURFQ9Y675 71 aa6.16□□□□□ -1.42
LDLR-212ENST00000560467 SERP1Q9Y6X1 66 aa6.16□□□□□ -1.42
LDLR-212ENST00000560467 M0R2T5 61 aa6.14□□□□□ -1.43
LDLR-212ENST00000560467 CYSTM1Q9H1C7 97 aa6.13□□□□□ -1.43
LDLR-212ENST00000560467 FLGP20930 4061 aaPredicted RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms