RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SCRIBQ14160 1630 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 A0A1B0GUT8 65 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 KANTRA0A1W2PQU2 76 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 HMGA1P17096 107 aaKnown RBP0.03□□□□□ -2.4
USP3-209ENST00000558925 ADIRFQ15847 76 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 C18orf32Q8TCD1 76 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 GAFA1Q96PS6 74 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 FXYD6Q9H0Q3 95 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 RGPD8O14715 1765 aaPredicted RBP0.03□□□□□ -2.4
USP3-209ENST00000558925 RGPD5Q99666 1765 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 DNAH5Q8TE73 4624 aa0.03□□□□□ -2.41
USP3-209ENST00000558925 DYNC2H1Q8NCM8 4307 aaKnown RBP0.03□□□□□ -2.41
USP3-209ENST00000558925 CPS1P31327 1500 aa0.03□□□□□ -2.41
USP3-209ENST00000558925 FAT1Q14517 4588 aa0.03□□□□□ -2.41
USP3-209ENST00000558925 IQGAP3Q86VI3 1631 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 AKAP9Q99996 3911 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 SACSQ9NZJ4 4579 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 C4AP0C0L4 1744 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 C4BP0C0L5 1744 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 ITSN1Q15811 1721 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 RICTORQ6R327 1708 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 TIAM2Q8IVF5 1701 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 MYO5CQ9NQX4 1742 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 ALMS1Q8TCU4 4167 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 SPTY2D1-AS1A0A0U1RR47 76 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 I3L3M4 83 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 NDUFA3O95167 84 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 ACYP1P07311 99 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 SMIM13P0DJ93 91 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 COX8AP10176 69 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 KRTAP20-2Q3LI61 65 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 HEPN1Q6WQI6 88 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 WFDC13Q8IUB5 93 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 WFDC9Q8NEX5 89 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 USMG5Q96IX5 58 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 CMYA5Q8N3K9 4069 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 RRBP1Q9P2E9 1410 aaKnown RBP0.02□□□□□ -2.41
USP3-209ENST00000558925 CD163L1Q9NR16 1453 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 DNAH9Q9NYC9 4486 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 ABCA8O94911 1581 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 CFAP74Q9C0B2 1584 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 PREX2Q70Z35 1606 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 PLCH1Q4KWH8 1693 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 ZC3H13Q5T200 1668 aaKnown RBP0.02□□□□□ -2.41
USP3-209ENST00000558925 PREX1Q8TCU6 1659 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 TNRC6CQ9HCJ0 1690 aaKnown RBP0.02□□□□□ -2.41
USP3-209ENST00000558925 PKHD1L1Q86WI1 4243 aa0.02□□□□□ -2.41
USP3-209ENST00000558925 PARP4Q9UKK3 1724 aaKnown RBP0.01□□□□□ -2.41
USP3-209ENST00000558925 LPAP08519 4548 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 H0YAA0 97 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 SPINK4O60575 86 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 IFI27P40305 119 aaPredicted RBP0.01□□□□□ -2.41
USP3-209ENST00000558925 DEFA5Q01523 94 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 NREPQ16612 68 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 SPRR2GQ9BYE4 73 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 CLIP1P30622 1438 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 HUWE1Q7Z6Z7 4374 aaKnown RBP0.01□□□□□ -2.41
USP3-209ENST00000558925 LRRC9Q6ZRR7 1453 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 MAP3K1Q13233 1512 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 URB2Q14146 1524 aaKnown RBP0.01□□□□□ -2.41
USP3-209ENST00000558925 MAGI3Q5TCQ9 1506 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 UGGT2Q9NYU1 1516 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 TRRAPQ9Y4A5 3859 aa0.01□□□□□ -2.41
USP3-209ENST00000558925 PLECQ15149 4684 aaKnown RBP0.01□□□□□ -2.41
USP3-209ENST00000558925 ANK3Q12955 4377 aaKnown RBP0□□□□□ -2.41
USP3-209ENST00000558925 A0A087WXM4 84 aa0□□□□□ -2.41
USP3-209ENST00000558925 CCDC88BA6NC98 1476 aa0□□□□□ -2.41
USP3-209ENST00000558925 LOC730098B7Z3J9 87 aa0□□□□□ -2.41
USP3-209ENST00000558925 UMAD1C9J7I0 102 aa0□□□□□ -2.41
USP3-209ENST00000558925 H3BVH4 76 aa0□□□□□ -2.41
USP3-209ENST00000558925 M0R2T5 61 aa0□□□□□ -2.41
USP3-209ENST00000558925 NDUFA4O00483 81 aa0□□□□□ -2.41
USP3-209ENST00000558925 CCL22O00626 93 aa0□□□□□ -2.41
USP3-209ENST00000558925 APOBP04114 4563 aaKnown RBP0□□□□□ -2.41
USP3-209ENST00000558925 ABCC1P33527 1531 aa0□□□□□ -2.41
USP3-209ENST00000558925 DDX60LQ5H9U9 1706 aaKnown RBP0□□□□□ -2.41
USP3-209ENST00000558925 ATP5EP2Q5VTU8 51 aa0□□□□□ -2.41
USP3-209ENST00000558925 MUC17Q685J3 4493 aa0□□□□□ -2.41
USP3-209ENST00000558925 CDC42BPGQ6DT37 1551 aa0□□□□□ -2.41
USP3-209ENST00000558925 DNMBPQ6XZF7 1577 aa0□□□□□ -2.41
USP3-209ENST00000558925 CCDC141Q6ZP82 1450 aa0□□□□□ -2.41
USP3-209ENST00000558925 ANKARQ7Z5J8 1434 aa0□□□□□ -2.41
USP3-209ENST00000558925 NRAPQ86VF7 1730 aa0□□□□□ -2.41
USP3-209ENST00000558925 PTPN23Q9H3S7 1636 aa0□□□□□ -2.41
USP3-209ENST00000558925 UGGT1Q9NYU2 1555 aa0□□□□□ -2.41
USP3-209ENST00000558925 CDKN2A-AS1Q9UH64 79 aa0□□□□□ -2.41
USP3-209ENST00000558925 HILPDAQ9Y5L2 63 aa0□□□□□ -2.41
USP3-209ENST00000558925 DNAH10Q8IVF4 4471 aa-0□□□□□ -2.41
USP3-209ENST00000558925 ABCA9Q8IUA7 1624 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 RNF17Q9BXT8 1623 aaKnown RBP-0.01□□□□□ -2.41
USP3-209ENST00000558925 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.01□□□□□ -2.41
USP3-209ENST00000558925 DUOX2Q9NRD8 1548 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 LYNX1G3V0Z9 82 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 PDCD5O14737 125 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 NDUFB1O75438 58 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 DEFB130BP0DP73 79 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 DEFB130AP0DP74 79 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 CRIP1P50238 77 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 LINC00158P58513 81 aa-0.01□□□□□ -2.41
USP3-209ENST00000558925 DEFB135Q30KP9 77 aa-0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms