RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CASC2Q6XLA1 102 aa9.87□□□□□ -0.83
LDLR-206ENST00000557958 FP248Q71RG6 208 aaPredicted RBP9.87□□□□□ -0.83
LDLR-206ENST00000557958 KRTAP13-2Q52LG2 175 aa9.87□□□□□ -0.83
LDLR-206ENST00000557958 WFDC13Q8IUB5 93 aa9.87□□□□□ -0.83
LDLR-206ENST00000557958 PLA2G1BP04054 148 aaKnown RBP9.86□□□□□ -0.83
LDLR-206ENST00000557958 ASB16-AS1Q495Z4 193 aa9.85□□□□□ -0.83
LDLR-206ENST00000557958 Q5VSD8 79 aa9.85□□□□□ -0.83
LDLR-206ENST00000557958 KRTAP29-1A8MX34 341 aaPredicted RBP9.83□□□□□ -0.84
LDLR-206ENST00000557958 KRTAP10-4P60372 401 aaPredicted RBP9.83□□□□□ -0.84
LDLR-206ENST00000557958 ZCCHC13Q8WW36 166 aaKnown RBP9.83□□□□□ -0.84
LDLR-206ENST00000557958 A0A1B0GVX0 72 aa9.82□□□□□ -0.84
LDLR-206ENST00000557958 LIMD2Q9BT23 127 aa9.81□□□□□ -0.84
LDLR-206ENST00000557958 FAT1Q14517 4588 aa9.81□□□□□ -0.84
LDLR-206ENST00000557958 C4orf48Q5BLP8 95 aa9.81□□□□□ -0.84
LDLR-206ENST00000557958 TYMSOSQ8TAI1 123 aa9.81□□□□□ -0.84
LDLR-206ENST00000557958 MMP24-AS1A0A0U1RRL7 71 aa9.8□□□□□ -0.84
LDLR-206ENST00000557958 hDV103S1A0JD37 113 aa9.8□□□□□ -0.84
LDLR-206ENST00000557958 IGHV6-1A0A0B4J1U7 121 aa9.78□□□□□ -0.84
LDLR-206ENST00000557958 C8orf17Q9NRJ1 99 aa9.78□□□□□ -0.84
LDLR-206ENST00000557958 KRTAP17-1Q9BYP8 105 aa9.77□□□□□ -0.85
LDLR-206ENST00000557958 HSPG2P98160 4391 aa9.77□□□□□ -0.85
LDLR-206ENST00000557958 SPINK1P00995 79 aa9.74□□□□□ -0.85
LDLR-206ENST00000557958 RYR1P21817 5038 aa9.74□□□□□ -0.85
LDLR-206ENST00000557958 Q8N1X5 172 aa9.74□□□□□ -0.85
LDLR-206ENST00000557958 KIAA1109Q2LD37 5005 aa9.73□□□□□ -0.85
LDLR-206ENST00000557958 MP68P56378 58 aa9.72□□□□□ -0.85
LDLR-206ENST00000557958 PRO0628Q9UI54 55 aa9.72□□□□□ -0.85
LDLR-206ENST00000557958 SPAG11AQ6PDA7 123 aa9.71□□□□□ -0.85
LDLR-206ENST00000557958 PRR26Q8N8Z3 221 aa9.71□□□□□ -0.85
LDLR-206ENST00000557958 TP53AIP1Q9HCN2 124 aa9.71□□□□□ -0.85
LDLR-206ENST00000557958 C8orf87E5RJ46 101 aa9.7□□□□□ -0.86
LDLR-206ENST00000557958 CYP4F30PQ9H0H9 118 aa9.7□□□□□ -0.86
LDLR-206ENST00000557958 RPS29P62273 56 aaKnown RBP9.69□□□□□ -0.86
LDLR-206ENST00000557958 C1orf195Q5TG92 126 aa9.69□□□□□ -0.86
LDLR-206ENST00000557958 LINC00304Q8N9R0 145 aa9.68□□□□□ -0.86
LDLR-206ENST00000557958 H3BPC8 53 aa9.68□□□□□ -0.86
LDLR-206ENST00000557958 MRPL34Q9BQ48 92 aaKnown RBP9.68□□□□□ -0.86
LDLR-206ENST00000557958 H0Y9P7 68 aa9.64□□□□□ -0.87
LDLR-206ENST00000557958 NDUFS5O43920 106 aa9.64□□□□□ -0.87
LDLR-206ENST00000557958 C1orf64Q8NEQ6 169 aa9.64□□□□□ -0.87
LDLR-206ENST00000557958 TRAV22A0A0B4J277 110 aa9.64□□□□□ -0.87
LDLR-206ENST00000557958 MPLKIPQ8TAP9 179 aa9.62□□□□□ -0.87
LDLR-206ENST00000557958 LINC00313P59037 77 aa9.61□□□□□ -0.87
LDLR-206ENST00000557958 NOTCH2NLQ7Z3S9 236 aa9.61□□□□□ -0.87
LDLR-206ENST00000557958 Q1T7F1 81 aa9.6□□□□□ -0.87
LDLR-206ENST00000557958 LINC00208Q96KT6 92 aa9.6□□□□□ -0.87
LDLR-206ENST00000557958 KRTAP4-5Q9BYR2 181 aa9.59□□□□□ -0.87
LDLR-206ENST00000557958 SPANXA2-OT1Q8N9U9 137 aa9.59□□□□□ -0.87
LDLR-206ENST00000557958 BRK1Q8WUW1 75 aa9.53□□□□□ -0.88
LDLR-206ENST00000557958 BIRC6Q9NR09 4857 aa9.52□□□□□ -0.88
LDLR-206ENST00000557958 PKHD1L1Q86WI1 4243 aa9.51□□□□□ -0.89
LDLR-206ENST00000557958 PRR4Q16378 134 aa9.49□□□□□ -0.89
LDLR-206ENST00000557958 V9GYY9 64 aa9.49□□□□□ -0.89
LDLR-206ENST00000557958 Q8N9P0 234 aaPredicted RBP9.49□□□□□ -0.89
LDLR-206ENST00000557958 FLG2Q5D862 2391 aaPredicted RBP9.47□□□□□ -0.89
LDLR-206ENST00000557958 KRTAP10-8P60410 259 aa9.47□□□□□ -0.89
LDLR-206ENST00000557958 LRP1Q07954 4544 aaKnown RBP9.45□□□□□ -0.9
LDLR-206ENST00000557958 LOC101927531A0A1B0GV80 90 aa9.44□□□□□ -0.9
LDLR-206ENST00000557958 KRTAP16-1A8MUX0 517 aa9.43□□□□□ -0.9
LDLR-206ENST00000557958 IGLV7-46A0A075B6I9 117 aa9.39□□□□□ -0.91
LDLR-206ENST00000557958 KRTAP13-3Q3SY46 172 aa9.38□□□□□ -0.91
LDLR-206ENST00000557958 Q5W150 140 aa9.38□□□□□ -0.91
LDLR-206ENST00000557958 MT1HL1P0DM35 61 aa9.37□□□□□ -0.91
LDLR-206ENST00000557958 MYCBP2O75592 4640 aa9.36□□□□□ -0.91
LDLR-206ENST00000557958 PSPHP1O15172 72 aa9.36□□□□□ -0.91
LDLR-206ENST00000557958 RETNLBQ9BQ08 111 aa9.36□□□□□ -0.91
LDLR-206ENST00000557958 HERC2O95714 4834 aa9.35□□□□□ -0.91
LDLR-206ENST00000557958 FAT3Q8TDW7 4589 aa9.35□□□□□ -0.91
LDLR-206ENST00000557958 PCOTHQ58A44 107 aa9.34□□□□□ -0.91
LDLR-206ENST00000557958 A8MUN3 132 aa9.32□□□□□ -0.92
LDLR-206ENST00000557958 TNXBP22105 4242 aa9.32□□□□□ -0.92
LDLR-206ENST00000557958 COA5Q86WW8 74 aa9.32□□□□□ -0.92
LDLR-206ENST00000557958 J3QL48 77 aa9.31□□□□□ -0.92
LDLR-206ENST00000557958 Q5VV11 94 aa9.31□□□□□ -0.92
LDLR-206ENST00000557958 ABCA13Q86UQ4 5058 aa9.3□□□□□ -0.92
LDLR-206ENST00000557958 C9orf92A6NGG3 77 aa9.26□□□□□ -0.93
LDLR-206ENST00000557958 IGKV2-30P06310 120 aa9.26□□□□□ -0.93
LDLR-206ENST00000557958 DMBT1Q9UGM3 2413 aaPredicted RBP9.25□□□□□ -0.93
LDLR-206ENST00000557958 C20orf166-AS1Q96NR2 134 aa9.24□□□□□ -0.93
LDLR-206ENST00000557958 Q75L30 129 aa9.23□□□□□ -0.93
LDLR-206ENST00000557958 PRR15LQ9BU68 103 aa9.23□□□□□ -0.93
LDLR-206ENST00000557958 A8MUU9 505 aa9.22□□□□□ -0.93
LDLR-206ENST00000557958 IGKV2D-30A0A075B6S6 120 aa9.19□□□□□ -0.94
LDLR-206ENST00000557958 CHKB-CPT1BH3BT56 60 aa9.18□□□□□ -0.94
LDLR-206ENST00000557958 LINC01558Q9Y6Z2 57 aa9.17□□□□□ -0.94
LDLR-206ENST00000557958 HRES1P13985 223 aa9.16□□□□□ -0.94
LDLR-206ENST00000557958 C7orf65Q6ZTY9 151 aa9.16□□□□□ -0.94
LDLR-206ENST00000557958 ACYP2P14621 99 aa9.1□□□□□ -0.95
LDLR-206ENST00000557958 DMAC1Q96GE9 116 aa9.09□□□□□ -0.95
LDLR-206ENST00000557958 PMAIP1Q13794 54 aa9.08□□□□□ -0.96
LDLR-206ENST00000557958 PCLOQ9Y6V0 5065 aa9.08□□□□□ -0.96
LDLR-206ENST00000557958 A6NED7 52 aa9.07□□□□□ -0.96
LDLR-206ENST00000557958 A8MU10 97 aa9.06□□□□□ -0.96
LDLR-206ENST00000557958 CDC42SE1Q9NRR8 79 aa9.05□□□□□ -0.96
LDLR-206ENST00000557958 ATP11AUNQ6ZP68 121 aa9.04□□□□□ -0.96
LDLR-206ENST00000557958 LCA10Q71F78 164 aa9.04□□□□□ -0.96
LDLR-206ENST00000557958 RPL37P61927 97 aaKnown RBP8.99□□□□□ -0.97
LDLR-206ENST00000557958 XP32Q5T750 250 aa8.98□□□□□ -0.97
LDLR-206ENST00000557958 SPINK7P58062 85 aa8.97□□□□□ -0.97
LDLR-206ENST00000557958 TPRXLQ17RH7 258 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms