RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005		R4GN34	69 aa		2.68	□□□□□ -1.98
SYNE2-223	ENST00000557005	KRTAP1-4	P0C5Y4	121 aa		2.67	□□□□□ -1.98
SYNE2-223	ENST00000557005	FRAS1	Q86XX4	4008 aa		2.67	□□□□□ -1.98
SYNE2-223	ENST00000557005	CHD6	Q8TD26	2715 aa		2.67	□□□□□ -1.98
SYNE2-223	ENST00000557005	FLNB	O75369	2602 aa	Known RBP	2.67	□□□□□ -1.98
SYNE2-223	ENST00000557005	COL12A1	Q99715	3063 aa		2.66	□□□□□ -1.98
SYNE2-223	ENST00000557005	DNAH7	Q8WXX0	4024 aa		2.66	□□□□□ -1.98
SYNE2-223	ENST00000557005	CEP295	Q9C0D2	2601 aa		2.66	□□□□□ -1.98
SYNE2-223	ENST00000557005	FASN	P49327	2511 aa	Known RBP	2.66	□□□□□ -1.98
SYNE2-223	ENST00000557005	CSMD3	Q7Z407	3707 aa		2.65	□□□□□ -1.98
SYNE2-223	ENST00000557005	C20orf166-AS1	Q96NR2	134 aa		2.65	□□□□□ -1.98
SYNE2-223	ENST00000557005	KRTAP3-3	Q9BYR6	98 aa		2.65	□□□□□ -1.99
SYNE2-223	ENST00000557005	KRTAP3-2	Q9BYR7	98 aa		2.65	□□□□□ -1.99
SYNE2-223	ENST00000557005	MYO18B	Q8IUG5	2567 aa		2.64	□□□□□ -1.99
SYNE2-223	ENST00000557005		A0A0A0MQY5	61 aa		2.64	□□□□□ -1.99
SYNE2-223	ENST00000557005	FBN2	P35556	2912 aa		2.63	□□□□□ -1.99
SYNE2-223	ENST00000557005	UTP20	O75691	2785 aa	Known RBP	2.63	□□□□□ -1.99
SYNE2-223	ENST00000557005	ZNF292	O60281	2723 aa		2.63	□□□□□ -1.99
SYNE2-223	ENST00000557005	TLN2	Q9Y4G6	2542 aa		2.63	□□□□□ -1.99
SYNE2-223	ENST00000557005	DYNC2H1	Q8NCM8	4307 aa	Known RBP	2.63	□□□□□ -1.99
SYNE2-223	ENST00000557005	CRYBG3	Q68DQ2	2970 aa		2.62	□□□□□ -1.99
SYNE2-223	ENST00000557005	LYST	Q99698	3801 aa		2.62	□□□□□ -1.99
SYNE2-223	ENST00000557005	ITPR3	Q14573	2671 aa		2.62	□□□□□ -1.99
SYNE2-223	ENST00000557005	SPTBN4	Q9H254	2564 aa		2.62	□□□□□ -1.99
SYNE2-223	ENST00000557005	LOC100996750	A0A140TA64	210 aa		2.61	□□□□□ -1.99
SYNE2-223	ENST00000557005	KRTAP4-6	Q9BYQ5	205 aa		2.61	□□□□□ -1.99
SYNE2-223	ENST00000557005	MAP1A	P78559	2803 aa	Predicted RBP	2.61	□□□□□ -1.99
SYNE2-223	ENST00000557005	FLNA	P21333	2647 aa	Known RBP	2.61	□□□□□ -1.99
SYNE2-223	ENST00000557005	SETX	Q7Z333	2677 aa	Known RBP	2.61	□□□□□ -1.99
SYNE2-223	ENST00000557005	TEX15	Q9BXT5	2789 aa		2.59	□□□□□ -1.99
SYNE2-223	ENST00000557005	DNAH9	Q9NYC9	4486 aa		2.59	□□□□□ -1.99
SYNE2-223	ENST00000557005	ASH1L	Q9NR48	2969 aa	Known RBP	2.59	□□□□□ -1.99
SYNE2-223	ENST00000557005	KRTAP12-2	P59991	146 aa		2.59	□□□□□ -2
SYNE2-223	ENST00000557005	USP9X	Q93008	2570 aa	Predicted RBP	2.59	□□□□□ -2
SYNE2-223	ENST00000557005	CCDC168	Q8NDH2	2452 aa		2.58	□□□□□ -2
SYNE2-223	ENST00000557005	HECTD4	Q9Y4D8	3996 aa		2.58	□□□□□ -2
SYNE2-223	ENST00000557005	NBEAL2	Q6ZNJ1	2754 aa		2.58	□□□□□ -2
SYNE2-223	ENST00000557005	JMJD1C	Q15652	2540 aa		2.58	□□□□□ -2
SYNE2-223	ENST00000557005	XP32	Q5T750	250 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005	GCN1	Q92616	2671 aa	Known RBP	2.57	□□□□□ -2
SYNE2-223	ENST00000557005	VPS13D	Q5THJ4	4388 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005		M0R2T5	61 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005	ABCA12	Q86UK0	2595 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005	TPRXL	Q17RH7	258 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005	MYO9A	B2RTY4	2548 aa		2.57	□□□□□ -2
SYNE2-223	ENST00000557005	PLAC4	Q8WY50	150 aa		2.56	□□□□□ -2
SYNE2-223	ENST00000557005		P0C880	135 aa		2.56	□□□□□ -2
SYNE2-223	ENST00000557005	KRTAP3-1	Q9BYR8	98 aa		2.56	□□□□□ -2
SYNE2-223	ENST00000557005	SEC61B	P60468	96 aa	Known RBP	2.56	□□□□□ -2
SYNE2-223	ENST00000557005	EPG5	Q9HCE0	2579 aa		2.56	□□□□□ -2
SYNE2-223	ENST00000557005	DNAH6	Q9C0G6	4158 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	DNAH2	Q9P225	4427 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	DNAH8	Q96JB1	4490 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	PRKDC	P78527	4128 aa	Known RBP	2.55	□□□□□ -2
SYNE2-223	ENST00000557005	ACACB	O00763	2458 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	MAST4	O15021	2626 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	ITPR1	Q14643	2758 aa		2.55	□□□□□ -2
SYNE2-223	ENST00000557005	ACAN	P16112	2415 aa		2.54	□□□□□ -2
SYNE2-223	ENST00000557005	KRTAP21-3	Q3LHN1	58 aa		2.54	□□□□□ -2
SYNE2-223	ENST00000557005	DNAH17	Q9UFH2	4485 aa		2.54	□□□□□ -2
SYNE2-223	ENST00000557005	IGSF10	Q6WRI0	2623 aa		2.53	□□□□□ -2
SYNE2-223	ENST00000557005	CELSR2	Q9HCU4	2923 aa		2.52	□□□□□ -2.01
SYNE2-223	ENST00000557005	KRTAP13-4	Q3LI77	160 aa		2.52	□□□□□ -2.01
SYNE2-223	ENST00000557005	PLEC	Q15149	4684 aa	Known RBP	2.52	□□□□□ -2.01
SYNE2-223	ENST00000557005	DNAH11	Q96DT5	4516 aa		2.52	□□□□□ -2.01
SYNE2-223	ENST00000557005	KRTAP10-8	P60410	259 aa		2.51	□□□□□ -2.01
SYNE2-223	ENST00000557005	USP9Y	O00507	2555 aa	Predicted RBP	2.5	□□□□□ -2.01
SYNE2-223	ENST00000557005		A0A1B0GVY2	172 aa		2.5	□□□□□ -2.01
SYNE2-223	ENST00000557005	UBR5	O95071	2799 aa	Predicted RBP	2.5	□□□□□ -2.01
SYNE2-223	ENST00000557005	NOTCH1	P46531	2555 aa		2.5	□□□□□ -2.01
SYNE2-223	ENST00000557005	SETD2	Q9BYW2	2564 aa	Predicted RBP	2.49	□□□□□ -2.01
SYNE2-223	ENST00000557005	PDZD2	O15018	2839 aa		2.49	□□□□□ -2.01
SYNE2-223	ENST00000557005	APC	P25054	2843 aa		2.48	□□□□□ -2.01
SYNE2-223	ENST00000557005	LCE2C	Q5TA81	110 aa		2.47	□□□□□ -2.01
SYNE2-223	ENST00000557005	KRTAP12-1	P59990	96 aa		2.47	□□□□□ -2.01
SYNE2-223	ENST00000557005	USP24	Q9UPU5	2620 aa		2.47	□□□□□ -2.01
SYNE2-223	ENST00000557005	KRTAP15-1	Q3LI76	137 aa		2.47	□□□□□ -2.01
SYNE2-223	ENST00000557005	MTOR	P42345	2549 aa		2.46	□□□□□ -2.02
SYNE2-223	ENST00000557005	KMT2A	Q03164	3969 aa		2.46	□□□□□ -2.02
SYNE2-223	ENST00000557005	ZFYVE26	Q68DK2	2539 aa		2.46	□□□□□ -2.02
SYNE2-223	ENST00000557005	TNP1	P09430	55 aa		2.46	□□□□□ -2.02
SYNE2-223	ENST00000557005	STARD9	Q9P2P6	4700 aa		2.46	□□□□□ -2.02
SYNE2-223	ENST00000557005	KRTAP10-6	P60371	365 aa	Predicted RBP	2.45	□□□□□ -2.02
SYNE2-223	ENST00000557005	MXRA5	Q9NR99	2828 aa		2.45	□□□□□ -2.02
SYNE2-223	ENST00000557005	DNAH5	Q8TE73	4624 aa		2.44	□□□□□ -2.02
SYNE2-223	ENST00000557005	TEP1	Q99973	2627 aa	Known RBP	2.44	□□□□□ -2.02
SYNE2-223	ENST00000557005	KMT2B	Q9UMN6	2715 aa	Predicted RBP	2.44	□□□□□ -2.02
SYNE2-223	ENST00000557005	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	2.44	□□□□□ -2.02
SYNE2-223	ENST00000557005	ZAN	Q9Y493	2812 aa		2.44	□□□□□ -2.02
SYNE2-223	ENST00000557005	F8	P00451	2351 aa		2.43	□□□□□ -2.02
SYNE2-223	ENST00000557005	PKHD1L1	Q86WI1	4243 aa		2.42	□□□□□ -2.02
SYNE2-223	ENST00000557005	PP632	Q6XCG6	107 aa		2.42	□□□□□ -2.02
SYNE2-223	ENST00000557005	HIVEP1	P15822	2718 aa		2.41	□□□□□ -2.02
SYNE2-223	ENST00000557005	CENPE	Q02224	2701 aa		2.41	□□□□□ -2.02
SYNE2-223	ENST00000557005	ATR	Q13535	2644 aa		2.41	□□□□□ -2.02
SYNE2-223	ENST00000557005	SACS	Q9NZJ4	4579 aa		2.41	□□□□□ -2.02
SYNE2-223	ENST00000557005	CFAP46	Q8IYW2	2715 aa		2.4	□□□□□ -2.02
SYNE2-223	ENST00000557005	HECTD1	Q9ULT8	2610 aa		2.4	□□□□□ -2.03
SYNE2-223	ENST00000557005	BAHCC1	Q9P281	2608 aa		2.4	□□□□□ -2.03
SYNE2-223	ENST00000557005	VPS13B	Q7Z7G8	4022 aa		2.39	□□□□□ -2.03

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