RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C9orf118A6NHY6 69 aa7.19□□□□□ -1.26
SHMT2-219ENST00000555563 TAX1BP3O14907 124 aa7.19□□□□□ -1.26
SHMT2-219ENST00000555563 LOC110117498A0A087WWA1 95 aa7.18□□□□□ -1.26
SHMT2-219ENST00000555563 KRTAP16-1A8MUX0 517 aa7.18□□□□□ -1.26
SHMT2-219ENST00000555563 Q6ZQT0 140 aa7.18□□□□□ -1.26
SHMT2-219ENST00000555563 LINC00313P59037 77 aa7.17□□□□□ -1.26
SHMT2-219ENST00000555563 NOTCH2NLQ7Z3S9 236 aa7.17□□□□□ -1.26
SHMT2-219ENST00000555563 C14orf132Q9NPU4 83 aa7.17□□□□□ -1.26
SHMT2-219ENST00000555563 IGHV6-1A0A0B4J1U7 121 aa7.16□□□□□ -1.26
SHMT2-219ENST00000555563 A0A1W2PPM0 123 aa7.16□□□□□ -1.26
SHMT2-219ENST00000555563 MT1HP80294 61 aa7.16□□□□□ -1.26
SHMT2-219ENST00000555563 MTURNQ8N3F0 131 aa7.14□□□□□ -1.27
SHMT2-219ENST00000555563 A0A1B0GVX0 72 aa7.13□□□□□ -1.27
SHMT2-219ENST00000555563 PDE6GP18545 87 aa7.13□□□□□ -1.27
SHMT2-219ENST00000555563 H3BT86 120 aa7.12□□□□□ -1.27
SHMT2-219ENST00000555563 COX6B2Q6YFQ2 88 aa7.12□□□□□ -1.27
SHMT2-219ENST00000555563 A0A1B0GW54 56 aa7.11□□□□□ -1.27
SHMT2-219ENST00000555563 C8orf87E5RJ46 101 aa7.11□□□□□ -1.27
SHMT2-219ENST00000555563 J3KT08 172 aa7.11□□□□□ -1.27
SHMT2-219ENST00000555563 SPCS1Q9Y6A9 102 aa7.08□□□□□ -1.28
SHMT2-219ENST00000555563 A8MWP4 228 aa7.05□□□□□ -1.28
SHMT2-219ENST00000555563 NDUFB1O75438 58 aa7.05□□□□□ -1.28
SHMT2-219ENST00000555563 COL5A1-AS1Q5SY13 56 aa7.05□□□□□ -1.28
SHMT2-219ENST00000555563 IGKV3D-7A0A0C4DH55 119 aa7.03□□□□□ -1.28
SHMT2-219ENST00000555563 NREPQ16612 68 aa7.03□□□□□ -1.28
SHMT2-219ENST00000555563 C8orf17Q9NRJ1 99 aa7.02□□□□□ -1.29
SHMT2-219ENST00000555563 M0R2T5 61 aa7.01□□□□□ -1.29
SHMT2-219ENST00000555563 KRTAP10-6P60371 365 aaPredicted RBP7□□□□□ -1.29
SHMT2-219ENST00000555563 LORP23490 312 aaPredicted RBP6.99□□□□□ -1.29
SHMT2-219ENST00000555563 K7EP34 96 aa6.98□□□□□ -1.29
SHMT2-219ENST00000555563 PRR15Q8IV56 129 aa6.98□□□□□ -1.29
SHMT2-219ENST00000555563 Q8N9P0 234 aaPredicted RBP6.98□□□□□ -1.29
SHMT2-219ENST00000555563 ZCCHC13Q8WW36 166 aaKnown RBP6.98□□□□□ -1.29
SHMT2-219ENST00000555563 LCE2BO14633 110 aa6.97□□□□□ -1.29
SHMT2-219ENST00000555563 PRO0461Q9UI25 63 aa6.97□□□□□ -1.29
SHMT2-219ENST00000555563 PCP4L1A6NKN8 68 aa6.96□□□□□ -1.3
SHMT2-219ENST00000555563 HRES1P13985 223 aa6.95□□□□□ -1.3
SHMT2-219ENST00000555563 Q6ZVQ6 151 aa6.95□□□□□ -1.3
SHMT2-219ENST00000555563 FLGP20930 4061 aaPredicted RBP6.95□□□□□ -1.3
SHMT2-219ENST00000555563 MMP24-AS1A0A0U1RRL7 71 aa6.94□□□□□ -1.3
SHMT2-219ENST00000555563 K7EQZ3 153 aa6.94□□□□□ -1.3
SHMT2-219ENST00000555563 MPLKIPQ8TAP9 179 aa6.93□□□□□ -1.3
SHMT2-219ENST00000555563 BPY2O14599 106 aa6.92□□□□□ -1.3
SHMT2-219ENST00000555563 FAM236DA0A1B0GTK5 79 aa6.91□□□□□ -1.3
SHMT2-219ENST00000555563 FAM236CP0DP71 79 aa6.91□□□□□ -1.3
SHMT2-219ENST00000555563 TMEM254Q8TBM7 123 aa6.9□□□□□ -1.3
SHMT2-219ENST00000555563 RBM12B-AS1Q9P1G2 102 aa6.9□□□□□ -1.3
SHMT2-219ENST00000555563 SPINK7P58062 85 aa6.89□□□□□ -1.31
SHMT2-219ENST00000555563 GTF2H5Q6ZYL4 71 aa6.89□□□□□ -1.31
SHMT2-219ENST00000555563 MRPL34Q9BQ48 92 aaKnown RBP6.89□□□□□ -1.31
SHMT2-219ENST00000555563 hDV103S1A0JD37 113 aa6.88□□□□□ -1.31
SHMT2-219ENST00000555563 Q8N9L7 120 aa6.87□□□□□ -1.31
SHMT2-219ENST00000555563 LINC00846Q9NV44 126 aa6.86□□□□□ -1.31
SHMT2-219ENST00000555563 NDUFS5O43920 106 aa6.83□□□□□ -1.32
SHMT2-219ENST00000555563 UBL5Q9BZL1 73 aa6.83□□□□□ -1.32
SHMT2-219ENST00000555563 F8W1H4 67 aa6.82□□□□□ -1.32
SHMT2-219ENST00000555563 WFDC13Q8IUB5 93 aa6.82□□□□□ -1.32
SHMT2-219ENST00000555563 ETDBQ3ZM63 59 aa6.81□□□□□ -1.32
SHMT2-219ENST00000555563 CASC2Q6XLA1 102 aa6.8□□□□□ -1.32
SHMT2-219ENST00000555563 KRTAP9-8Q9BYQ0 159 aa6.78□□□□□ -1.32
SHMT2-219ENST00000555563 HCG22E2RYF7 251 aa6.76□□□□□ -1.33
SHMT2-219ENST00000555563 Q5W150 140 aa6.76□□□□□ -1.33
SHMT2-219ENST00000555563 KRTAP9-7A8MTY7 169 aa6.74□□□□□ -1.33
SHMT2-219ENST00000555563 IGKV2D-30A0A075B6S6 120 aa6.72□□□□□ -1.33
SHMT2-219ENST00000555563 IGKV2-30P06310 120 aa6.72□□□□□ -1.33
SHMT2-219ENST00000555563 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.71□□□□□ -1.34
SHMT2-219ENST00000555563 PCP4P48539 62 aa6.71□□□□□ -1.34
SHMT2-219ENST00000555563 C7orf65Q6ZTY9 151 aa6.71□□□□□ -1.34
SHMT2-219ENST00000555563 MT2AP02795 61 aa6.7□□□□□ -1.34
SHMT2-219ENST00000555563 CXCL6P80162 114 aa6.7□□□□□ -1.34
SHMT2-219ENST00000555563 MT1FP04733 61 aa6.66□□□□□ -1.34
SHMT2-219ENST00000555563 H1FX-AS1Q4G0G2 97 aa6.63□□□□□ -1.35
SHMT2-219ENST00000555563 FAM240AA0A1B0GVK7 77 aa6.62□□□□□ -1.35
SHMT2-219ENST00000555563 ACYP1P07311 99 aa6.62□□□□□ -1.35
SHMT2-219ENST00000555563 USH2AO75445 5202 aa6.62□□□□□ -1.35
SHMT2-219ENST00000555563 SSPOA2VEC9 5147 aa6.6□□□□□ -1.35
SHMT2-219ENST00000555563 KRTAP10-10P60014 251 aa6.6□□□□□ -1.35
SHMT2-219ENST00000555563 C4orf26Q17RF5 130 aa6.59□□□□□ -1.35
SHMT2-219ENST00000555563 TP53AIP1Q9HCN2 124 aa6.59□□□□□ -1.35
SHMT2-219ENST00000555563 A0A1B0GV90 55 aa6.58□□□□□ -1.36
SHMT2-219ENST00000555563 ATP5EP2Q5VTU8 51 aa6.58□□□□□ -1.36
SHMT2-219ENST00000555563 KRTAP9-3Q9BYQ3 159 aa6.56□□□□□ -1.36
SHMT2-219ENST00000555563 FCGBPQ9Y6R7 5405 aaPredicted RBP6.52□□□□□ -1.37
SHMT2-219ENST00000555563 HIST1H4AP62805 103 aaKnown RBP6.51□□□□□ -1.37
SHMT2-219ENST00000555563 TRAV22A0A0B4J277 110 aa6.49□□□□□ -1.37
SHMT2-219ENST00000555563 KRTAP3-1Q9BYR8 98 aa6.49□□□□□ -1.37
SHMT2-219ENST00000555563 LINC00643Q86TS7 51 aa6.48□□□□□ -1.37
SHMT2-219ENST00000555563 C1orf64Q8NEQ6 169 aa6.47□□□□□ -1.37
SHMT2-219ENST00000555563 A0A087WVE0 104 aa6.46□□□□□ -1.38
SHMT2-219ENST00000555563 KRTAP19-1Q8IUB9 90 aa6.45□□□□□ -1.38
SHMT2-219ENST00000555563 CYP4F30PQ9H0H9 118 aa6.45□□□□□ -1.38
SHMT2-219ENST00000555563 LOC101927531A0A1B0GV80 90 aa6.43□□□□□ -1.38
SHMT2-219ENST00000555563 UQCRQO14949 82 aa6.43□□□□□ -1.38
SHMT2-219ENST00000555563 C5orf47Q569G3 176 aa6.43□□□□□ -1.38
SHMT2-219ENST00000555563 S4R3F8 94 aa6.43□□□□□ -1.38
SHMT2-219ENST00000555563 H0Y9P7 68 aa6.4□□□□□ -1.38
SHMT2-219ENST00000555563 LCA10Q71F78 164 aa6.39□□□□□ -1.39
SHMT2-219ENST00000555563 MACF1Q9UPN3 7388 aaKnown RBP6.38□□□□□ -1.39
SHMT2-219ENST00000555563 J3QR89 54 aa6.37□□□□□ -1.39
SHMT2-219ENST00000555563 ATOX1O00244 68 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms