RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ANAPC11Q9NYG5 84 aa10.45□□□□□ -0.74
SYNE3-202ENST00000553340 NUPR2A6NF83 97 aa10.44□□□□□ -0.74
SYNE3-202ENST00000553340 CDC42SE1Q9NRR8 79 aa10.44□□□□□ -0.74
SYNE3-202ENST00000553340 DYNC2H1Q8NCM8 4307 aaKnown RBP10.43□□□□□ -0.74
SYNE3-202ENST00000553340 ZNF861PO60384 105 aa10.43□□□□□ -0.74
SYNE3-202ENST00000553340 A0A087WTM6 91 aa10.42□□□□□ -0.74
SYNE3-202ENST00000553340 KTN1-AS1Q86SY8 53 aa10.39□□□□□ -0.75
SYNE3-202ENST00000553340 RTL8CO15255 209 aa10.38□□□□□ -0.75
SYNE3-202ENST00000553340 SPINK6Q6UWN8 80 aa10.37□□□□□ -0.75
SYNE3-202ENST00000553340 PLECQ15149 4684 aaKnown RBP10.35□□□□□ -0.75
SYNE3-202ENST00000553340 Q5W150 140 aa10.35□□□□□ -0.75
SYNE3-202ENST00000553340 A6NN06 94 aa10.34□□□□□ -0.75
SYNE3-202ENST00000553340 KRTAP13-3Q3SY46 172 aa10.33□□□□□ -0.76
SYNE3-202ENST00000553340 SPINK7P58062 85 aa10.32□□□□□ -0.76
SYNE3-202ENST00000553340 PRR26Q8N8Z3 221 aa10.3□□□□□ -0.76
SYNE3-202ENST00000553340 CIRBP-AS1Q8TBR5 109 aa10.3□□□□□ -0.76
SYNE3-202ENST00000553340 ACYP2P14621 99 aa10.28□□□□□ -0.76
SYNE3-202ENST00000553340 IGLV7-43P04211 117 aa10.27□□□□□ -0.77
SYNE3-202ENST00000553340 C8orf87E5RJ46 101 aa10.26□□□□□ -0.77
SYNE3-202ENST00000553340 DNAH8Q96JB1 4490 aa10.25□□□□□ -0.77
SYNE3-202ENST00000553340 FRAS1Q86XX4 4008 aa10.23□□□□□ -0.77
SYNE3-202ENST00000553340 HECTD4Q9Y4D8 3996 aa10.23□□□□□ -0.77
SYNE3-202ENST00000553340 SSBP3-AS1Q7Z2R9 100 aa10.22□□□□□ -0.77
SYNE3-202ENST00000553340 VPS13DQ5THJ4 4388 aa10.2□□□□□ -0.78
SYNE3-202ENST00000553340 RBM12B-AS1Q9P1G2 102 aa10.2□□□□□ -0.78
SYNE3-202ENST00000553340 C7orf65Q6ZTY9 151 aa10.19□□□□□ -0.78
SYNE3-202ENST00000553340 DMAC1Q96GE9 116 aa10.19□□□□□ -0.78
SYNE3-202ENST00000553340 LINC00313P59037 77 aa10.18□□□□□ -0.78
SYNE3-202ENST00000553340 FAM229AH3BQW9 127 aa10.17□□□□□ -0.78
SYNE3-202ENST00000553340 STARD9Q9P2P6 4700 aa10.15□□□□□ -0.78
SYNE3-202ENST00000553340 C1orf134Q5TEV5 83 aa10.12□□□□□ -0.79
SYNE3-202ENST00000553340 DNAH17Q9UFH2 4485 aa10.12□□□□□ -0.79
SYNE3-202ENST00000553340 RETNLBQ9BQ08 111 aa10.11□□□□□ -0.79
SYNE3-202ENST00000553340 ALMS1Q8TCU4 4167 aa10.1□□□□□ -0.79
SYNE3-202ENST00000553340 IGKV2-30P06310 120 aa10.1□□□□□ -0.79
SYNE3-202ENST00000553340 A0A1B0GU69 56 aa10.08□□□□□ -0.8
SYNE3-202ENST00000553340 PRKDCP78527 4128 aaKnown RBP10.06□□□□□ -0.8
SYNE3-202ENST00000553340 FBN3Q75N90 2809 aa10.06□□□□□ -0.8
SYNE3-202ENST00000553340 DNAH2Q9P225 4427 aa10.05□□□□□ -0.8
SYNE3-202ENST00000553340 KMT2AQ03164 3969 aa10.05□□□□□ -0.8
SYNE3-202ENST00000553340 MEGF8Q7Z7M0 2845 aa10.04□□□□□ -0.8
SYNE3-202ENST00000553340 KRTAP13-2Q52LG2 175 aa10.02□□□□□ -0.81
SYNE3-202ENST00000553340 KRTAP16-1A8MUX0 517 aa10.01□□□□□ -0.81
SYNE3-202ENST00000553340 TGP01266 2768 aa10□□□□□ -0.81
SYNE3-202ENST00000553340 SPATA8Q6RVD6 105 aa9.97□□□□□ -0.81
SYNE3-202ENST00000553340 IGKV2D-30A0A075B6S6 120 aa9.96□□□□□ -0.82
SYNE3-202ENST00000553340 LY6G6CO95867 125 aa9.95□□□□□ -0.82
SYNE3-202ENST00000553340 KRTAP10-2P60368 255 aa9.95□□□□□ -0.82
SYNE3-202ENST00000553340 UQCR11O14957 56 aa9.93□□□□□ -0.82
SYNE3-202ENST00000553340 DNHD1Q96M86 4753 aa9.92□□□□□ -0.82
SYNE3-202ENST00000553340 MIR22HGQ0VDD5 57 aa9.92□□□□□ -0.82
SYNE3-202ENST00000553340 DNAH11Q96DT5 4516 aa9.89□□□□□ -0.83
SYNE3-202ENST00000553340 PLA2G1BP04054 148 aaKnown RBP9.89□□□□□ -0.83
SYNE3-202ENST00000553340 DNAH6Q9C0G6 4158 aa9.88□□□□□ -0.83
SYNE3-202ENST00000553340 KRTAP21-3Q3LHN1 58 aa9.87□□□□□ -0.83
SYNE3-202ENST00000553340 PRAC1Q96KF2 57 aa9.86□□□□□ -0.83
SYNE3-202ENST00000553340 KRTAP1-4P0C5Y4 121 aa9.86□□□□□ -0.83
SYNE3-202ENST00000553340 Q6ZSA8 131 aa9.86□□□□□ -0.83
SYNE3-202ENST00000553340 C4orf48Q5BLP8 95 aa9.85□□□□□ -0.83
SYNE3-202ENST00000553340 KRTAP10-1P60331 282 aa9.83□□□□□ -0.84
SYNE3-202ENST00000553340 ADM2Q7Z4H4 148 aa9.82□□□□□ -0.84
SYNE3-202ENST00000553340 DNAH5Q8TE73 4624 aa9.82□□□□□ -0.84
SYNE3-202ENST00000553340 SPINK1P00995 79 aa9.78□□□□□ -0.84
SYNE3-202ENST00000553340 TYMSOSQ8TAI1 123 aa9.78□□□□□ -0.84
SYNE3-202ENST00000553340 LRP1BQ9NZR2 4599 aa9.74□□□□□ -0.85
SYNE3-202ENST00000553340 Q8N1X5 172 aa9.72□□□□□ -0.85
SYNE3-202ENST00000553340 LINC01554Q52M75 96 aa9.67□□□□□ -0.86
SYNE3-202ENST00000553340 PKD1P98161 4303 aa9.64□□□□□ -0.87
SYNE3-202ENST00000553340 LINC00304Q8N9R0 145 aa9.63□□□□□ -0.87
SYNE3-202ENST00000553340 VPS13BQ7Z7G8 4022 aa9.63□□□□□ -0.87
SYNE3-202ENST00000553340 RPS29P62273 56 aaKnown RBP9.62□□□□□ -0.87
SYNE3-202ENST00000553340 CSAG1Q6PB30 78 aa9.57□□□□□ -0.88
SYNE3-202ENST00000553340 FAT2Q9NYQ8 4349 aa9.54□□□□□ -0.88
SYNE3-202ENST00000553340 H0YAA0 97 aa9.52□□□□□ -0.89
SYNE3-202ENST00000553340 A8MUU9 505 aa9.51□□□□□ -0.89
SYNE3-202ENST00000553340 C20orf166-AS1Q96NR2 134 aa9.51□□□□□ -0.89
SYNE3-202ENST00000553340 C9orf92A6NGG3 77 aa9.5□□□□□ -0.89
SYNE3-202ENST00000553340 HYDINQ4G0P3 5121 aa9.49□□□□□ -0.89
SYNE3-202ENST00000553340 A0A1B0GU33 70 aa9.47□□□□□ -0.89
SYNE3-202ENST00000553340 KRTAP3-1Q9BYR8 98 aa9.46□□□□□ -0.89
SYNE3-202ENST00000553340 H1FX-AS1Q4G0G2 97 aa9.41□□□□□ -0.9
SYNE3-202ENST00000553340 SMR3BP02814 79 aaPredicted RBP9.37□□□□□ -0.91
SYNE3-202ENST00000553340 SACSQ9NZJ4 4579 aa9.36□□□□□ -0.91
SYNE3-202ENST00000553340 KRTAP25-1Q3LHN0 102 aa9.3□□□□□ -0.92
SYNE3-202ENST00000553340 COX6B2Q6YFQ2 88 aa9.3□□□□□ -0.92
SYNE3-202ENST00000553340 PKHD1P08F94 4074 aa9.29□□□□□ -0.92
SYNE3-202ENST00000553340 K7ERS5 55 aa9.26□□□□□ -0.93
SYNE3-202ENST00000553340 PKHD1L1Q86WI1 4243 aa9.23□□□□□ -0.93
SYNE3-202ENST00000553340 KRTAP10-4P60372 401 aaPredicted RBP9.22□□□□□ -0.93
SYNE3-202ENST00000553340 DYNC1H1Q14204 4646 aaKnown RBP9.16□□□□□ -0.94
SYNE3-202ENST00000553340 APOBP04114 4563 aaKnown RBP9.14□□□□□ -0.95
SYNE3-202ENST00000553340 FAT1Q14517 4588 aa9.12□□□□□ -0.95
SYNE3-202ENST00000553340 A0A1B0GVY2 172 aa9.11□□□□□ -0.95
SYNE3-202ENST00000553340 FLG2Q5D862 2391 aaPredicted RBP9.09□□□□□ -0.95
SYNE3-202ENST00000553340 ROMO1P60602 79 aa9.07□□□□□ -0.96
SYNE3-202ENST00000553340 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
SYNE3-202ENST00000553340 H3BS24 57 aa9.06□□□□□ -0.96
SYNE3-202ENST00000553340 KRTAP10-6P60371 365 aaPredicted RBP9.05□□□□□ -0.96
SYNE3-202ENST00000553340 RPL37P61927 97 aaKnown RBP9.05□□□□□ -0.96
SYNE3-202ENST00000553340 KRTAP3-3Q9BYR6 98 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms