RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CDC42BPGQ6DT37 1551 aa-0.87□□□□□ -2.55
SCFD1-209ENST00000553280 IQGAP3Q86VI3 1631 aa-0.87□□□□□ -2.55
SCFD1-209ENST00000553280 LRRIQ1Q96JM4 1722 aa-0.87□□□□□ -2.55
SCFD1-209ENST00000553280 DIP2AQ14689 1571 aa-0.87□□□□□ -2.55
SCFD1-209ENST00000553280 DMXL1Q9Y485 3027 aa-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 DEFB106AQ8N104 65 aa-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 CEP290O15078 2479 aa-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 ANKRD11Q6UB99 2663 aaPredicted RBP-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 APOBP04114 4563 aaKnown RBP-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 DNAH11Q96DT5 4516 aa-0.88□□□□□ -2.55
SCFD1-209ENST00000553280 UGGT2Q9NYU1 1516 aa-0.89□□□□□ -2.55
SCFD1-209ENST00000553280 ETDCA0A1B0GVM5 59 aa-0.89□□□□□ -2.55
SCFD1-209ENST00000553280 GCN1Q92616 2671 aaKnown RBP-0.89□□□□□ -2.55
SCFD1-209ENST00000553280 LAMA2P24043 3122 aaKnown RBP-0.89□□□□□ -2.55
SCFD1-209ENST00000553280 PLECQ15149 4684 aaKnown RBP-0.9□□□□□ -2.55
SCFD1-209ENST00000553280 S4R3F8 94 aa-0.9□□□□□ -2.55
SCFD1-209ENST00000553280 VPS13BQ7Z7G8 4022 aa-0.9□□□□□ -2.55
SCFD1-209ENST00000553280 MTORP42345 2549 aa-0.9□□□□□ -2.55
SCFD1-209ENST00000553280 LAMA1P25391 3075 aa-0.9□□□□□ -2.55
SCFD1-209ENST00000553280 ITSN2Q9NZM3 1697 aa-0.91□□□□□ -2.55
SCFD1-209ENST00000553280 PKD1L2Q7Z442 2459 aa-0.91□□□□□ -2.56
SCFD1-209ENST00000553280 ANK3Q12955 4377 aaKnown RBP-0.92□□□□□ -2.56
SCFD1-209ENST00000553280 ATXN8Q156A1 80 aa-0.92□□□□□ -2.56
SCFD1-209ENST00000553280 RYR2Q92736 4967 aa-0.93□□□□□ -2.56
SCFD1-209ENST00000553280 DUOX2Q9NRD8 1548 aa-0.94□□□□□ -2.56
SCFD1-209ENST00000553280 HILPDAQ9Y5L2 63 aa-0.94□□□□□ -2.56
SCFD1-209ENST00000553280 MGAM2Q2M2H8 2515 aa-0.95□□□□□ -2.56
SCFD1-209ENST00000553280 DEFB114Q30KQ6 69 aa-0.95□□□□□ -2.56
SCFD1-209ENST00000553280 SMCO4Q9NRQ5 59 aa-0.95□□□□□ -2.56
SCFD1-209ENST00000553280 RNF213Q63HN8 5207 aa-0.95□□□□□ -2.56
SCFD1-209ENST00000553280 LAMA3Q16787 3333 aa-0.96□□□□□ -2.56
SCFD1-209ENST00000553280 ABCA9Q8IUA7 1624 aa-0.97□□□□□ -2.56
SCFD1-209ENST00000553280 DNHD1Q96M86 4753 aa-0.97□□□□□ -2.56
SCFD1-209ENST00000553280 WDR87Q6ZQQ6 2873 aa-0.97□□□□□ -2.56
SCFD1-209ENST00000553280 ASXL1Q8IXJ9 1541 aa-0.98□□□□□ -2.57
SCFD1-209ENST00000553280 UTP20O75691 2785 aaKnown RBP-0.98□□□□□ -2.57
SCFD1-209ENST00000553280 DNAH1Q9P2D7 4330 aa-0.98□□□□□ -2.57
SCFD1-209ENST00000553280 KALRNO60229 2985 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 TEX15Q9BXT5 2789 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 C3P01024 1663 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 LRRK2Q5S007 2527 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 WT1-ASQ06250 92 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 MINOS1Q5TGZ0 78 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 ANKRD36CQ5JPF3 1778 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 BPTFQ12830 3046 aa-0.99□□□□□ -2.57
SCFD1-209ENST00000553280 ACACAQ13085 2346 aa-1□□□□□ -2.57
SCFD1-209ENST00000553280 PDCD5O14737 125 aa-1□□□□□ -2.57
SCFD1-209ENST00000553280 SACSQ9NZJ4 4579 aa-1□□□□□ -2.57
SCFD1-209ENST00000553280 NIPBLQ6KC79 2804 aaeCLIP-1□□□□□ -2.57
SCFD1-209ENST00000553280 KIF1AQ12756 1690 aa-1□□□□□ -2.57
SCFD1-209ENST00000553280 RPS27P42677 84 aaKnown RBP-1.01□□□□□ -2.57
SCFD1-209ENST00000553280 RPS27LQ71UM5 84 aaKnown RBP-1.01□□□□□ -2.57
SCFD1-209ENST00000553280 CMYA5Q8N3K9 4069 aa-1.01□□□□□ -2.57
SCFD1-209ENST00000553280 ABCC6O95255 1503 aa-1.02□□□□□ -2.57
SCFD1-209ENST00000553280 MT1HP80294 61 aa-1.02□□□□□ -2.57
SCFD1-209ENST00000553280 USP9XQ93008 2570 aaPredicted RBP-1.02□□□□□ -2.57
SCFD1-209ENST00000553280 DYNC1H1Q14204 4646 aaKnown RBP-1.03□□□□□ -2.57
SCFD1-209ENST00000553280 NBEAQ8NFP9 2946 aa-1.03□□□□□ -2.57
SCFD1-209ENST00000553280 GNG13Q9P2W3 67 aa-1.03□□□□□ -2.57
SCFD1-209ENST00000553280 TRIOO75962 3097 aa-1.03□□□□□ -2.57
SCFD1-209ENST00000553280 DNAH7Q8WXX0 4024 aa-1.04□□□□□ -2.58
SCFD1-209ENST00000553280 RELNP78509 3460 aa-1.04□□□□□ -2.58
SCFD1-209ENST00000553280 FAM186AA6NE01 2351 aa-1.05□□□□□ -2.58
SCFD1-209ENST00000553280 DNAH8Q96JB1 4490 aa-1.05□□□□□ -2.58
SCFD1-209ENST00000553280 TOGARAM1Q9Y4F4 1720 aa-1.06□□□□□ -2.58
SCFD1-209ENST00000553280 DNMBPQ6XZF7 1577 aa-1.07□□□□□ -2.58
SCFD1-209ENST00000553280 DEFB1P60022 68 aa-1.07□□□□□ -2.58
SCFD1-209ENST00000553280 DEFB110Q30KQ9 67 aa-1.07□□□□□ -2.58
SCFD1-209ENST00000553280 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.07□□□□□ -2.58
SCFD1-209ENST00000553280 CCDC168Q8NDH2 2452 aa-1.08□□□□□ -2.58
SCFD1-209ENST00000553280 C6orf48Q9UBA6 75 aa-1.08□□□□□ -2.58
SCFD1-209ENST00000553280 MROH1Q8NDA8 1641 aa-1.08□□□□□ -2.58
SCFD1-209ENST00000553280 RIF1Q5UIP0 2472 aaKnown RBP-1.09□□□□□ -2.58
SCFD1-209ENST00000553280 A0A0C4DFX4 3053 aa-1.09□□□□□ -2.58
SCFD1-209ENST00000553280 ACACBO00763 2458 aa-1.1□□□□□ -2.59
SCFD1-209ENST00000553280 NBEAL2Q6ZNJ1 2754 aa-1.1□□□□□ -2.59
SCFD1-209ENST00000553280 RANBP2P49792 3224 aaKnown RBP-1.1□□□□□ -2.59
SCFD1-209ENST00000553280 KRTAP19-5Q3LI72 72 aa-1.11□□□□□ -2.59
SCFD1-209ENST00000553280 FRYQ5TBA9 3013 aa-1.11□□□□□ -2.59
SCFD1-209ENST00000553280 NCBP2-AS2Q69YL0 99 aa-1.12□□□□□ -2.59
SCFD1-209ENST00000553280 FCER1GP30273 86 aa-1.14□□□□□ -2.59
SCFD1-209ENST00000553280 C5orf42Q9H799 3197 aa-1.14□□□□□ -2.59
SCFD1-209ENST00000553280 IGLV5-48A0A075B6I7 105 aa-1.15□□□□□ -2.59
SCFD1-209ENST00000553280 CLASP1Q7Z460 1538 aa-1.15□□□□□ -2.59
SCFD1-209ENST00000553280 H3BUA1 57 aa-1.16□□□□□ -2.6
SCFD1-209ENST00000553280 MT1XP80297 61 aa-1.16□□□□□ -2.6
SCFD1-209ENST00000553280 COL12A1Q99715 3063 aa-1.16□□□□□ -2.6
SCFD1-209ENST00000553280 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.16□□□□□ -2.6
SCFD1-209ENST00000553280 CSMD1Q96PZ7 3565 aa-1.17□□□□□ -2.6
SCFD1-209ENST00000553280 MADDQ8WXG6 1647 aa-1.18□□□□□ -2.6
SCFD1-209ENST00000553280 CHD7Q9P2D1 2997 aa-1.18□□□□□ -2.6
SCFD1-209ENST00000553280 EFCAB5A4FU69 1503 aa-1.18□□□□□ -2.6
SCFD1-209ENST00000553280 LINC01549A6NIU2 74 aa-1.18□□□□□ -2.6
SCFD1-209ENST00000553280 CEP295Q9C0D2 2601 aa-1.19□□□□□ -2.6
SCFD1-209ENST00000553280 CELSR3Q9NYQ7 3312 aa-1.2□□□□□ -2.6
SCFD1-209ENST00000553280 TLN2Q9Y4G6 2542 aa-1.2□□□□□ -2.6
SCFD1-209ENST00000553280 SFTA3P0C7M3 94 aa-1.2□□□□□ -2.6
SCFD1-209ENST00000553280 DNAH17Q9UFH2 4485 aa-1.2□□□□□ -2.6
SCFD1-209ENST00000553280 SMR3BP02814 79 aaPredicted RBP-1.21□□□□□ -2.6
SCFD1-209ENST00000553280 ITPR1Q14643 2758 aa-1.21□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms