RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ZNF706Q9Y5V0 76 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-215ENST00000552823 FAT1Q14517 4588 aa3.32□□□□□ -1.88
LIMA1-215ENST00000552823 IGLV8-61A0A075B6I0 122 aa3.32□□□□□ -1.88
LIMA1-215ENST00000552823 PSPHP1O15172 72 aa3.32□□□□□ -1.88
LIMA1-215ENST00000552823 SPRR1BP22528 89 aa3.32□□□□□ -1.88
LIMA1-215ENST00000552823 Q5XG85 94 aa3.32□□□□□ -1.88
LIMA1-215ENST00000552823 HMCN1Q96RW7 5635 aa3.31□□□□□ -1.88
LIMA1-215ENST00000552823 DYNC2H1Q8NCM8 4307 aaKnown RBP3.31□□□□□ -1.88
LIMA1-215ENST00000552823 SMIM26A0A096LP01 95 aa3.31□□□□□ -1.88
LIMA1-215ENST00000552823 MMP24-AS1A0A0U1RRL7 71 aa3.31□□□□□ -1.88
LIMA1-215ENST00000552823 C8orf17Q9NRJ1 99 aa3.31□□□□□ -1.88
LIMA1-215ENST00000552823 HECTD4Q9Y4D8 3996 aa3.31□□□□□ -1.88
LIMA1-215ENST00000552823 DNAH5Q8TE73 4624 aa3.3□□□□□ -1.88
LIMA1-215ENST00000552823 NDUFC1O43677 76 aa3.3□□□□□ -1.88
LIMA1-215ENST00000552823 PLA2G1BP04054 148 aaKnown RBP3.3□□□□□ -1.88
LIMA1-215ENST00000552823 A0A1B0GW54 56 aa3.3□□□□□ -1.88
LIMA1-215ENST00000552823 FP248Q71RG6 208 aaPredicted RBP3.3□□□□□ -1.88
LIMA1-215ENST00000552823 PMAIP1Q13794 54 aa3.29□□□□□ -1.88
LIMA1-215ENST00000552823 KRTAP29-1A8MX34 341 aaPredicted RBP3.29□□□□□ -1.88
LIMA1-215ENST00000552823 Q96NJ1 140 aa3.29□□□□□ -1.88
LIMA1-215ENST00000552823 TRAV22A0A0B4J277 110 aa3.28□□□□□ -1.88
LIMA1-215ENST00000552823 A0A1B0GVX0 72 aa3.28□□□□□ -1.88
LIMA1-215ENST00000552823 LORP23490 312 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-215ENST00000552823 KRTAP13-2Q52LG2 175 aa3.27□□□□□ -1.89
LIMA1-215ENST00000552823 TYMSOSQ8TAI1 123 aa3.27□□□□□ -1.89
LIMA1-215ENST00000552823 MRPL34Q9BQ48 92 aaKnown RBP3.27□□□□□ -1.89
LIMA1-215ENST00000552823 IGKV2D-30A0A075B6S6 120 aa3.26□□□□□ -1.89
LIMA1-215ENST00000552823 IGKV2-30P06310 120 aa3.26□□□□□ -1.89
LIMA1-215ENST00000552823 Q5W150 140 aa3.26□□□□□ -1.89
LIMA1-215ENST00000552823 LINC00483Q53H64 154 aa3.26□□□□□ -1.89
LIMA1-215ENST00000552823 C9orf92A6NGG3 77 aa3.25□□□□□ -1.89
LIMA1-215ENST00000552823 ATP5EP56381 51 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-215ENST00000552823 Q8N9P0 234 aaPredicted RBP3.25□□□□□ -1.89
LIMA1-215ENST00000552823 PKHD1P08F94 4074 aa3.25□□□□□ -1.89
LIMA1-215ENST00000552823 ZCCHC13Q8WW36 166 aaKnown RBP3.25□□□□□ -1.89
LIMA1-215ENST00000552823 A8MUN3 132 aa3.24□□□□□ -1.89
LIMA1-215ENST00000552823 LINC00313P59037 77 aa3.24□□□□□ -1.89
LIMA1-215ENST00000552823 DYNC1H1Q14204 4646 aaKnown RBP3.24□□□□□ -1.89
LIMA1-215ENST00000552823 SPAG11AQ6PDA7 123 aa3.24□□□□□ -1.89
LIMA1-215ENST00000552823 SACSQ9NZJ4 4579 aa3.23□□□□□ -1.89
LIMA1-215ENST00000552823 SSBP3-AS1Q7Z2R9 100 aa3.23□□□□□ -1.89
LIMA1-215ENST00000552823 VPS13BQ7Z7G8 4022 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 FAM229AH3BQW9 127 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 SPINK1P00995 79 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 PRR15LQ9BU68 103 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 FAT2Q9NYQ8 4349 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 COA5Q86WW8 74 aa3.22□□□□□ -1.89
LIMA1-215ENST00000552823 A8MU10 97 aa3.21□□□□□ -1.9
LIMA1-215ENST00000552823 RBM12B-AS1Q9P1G2 102 aa3.21□□□□□ -1.9
LIMA1-215ENST00000552823 MYCBP2O75592 4640 aa3.21□□□□□ -1.9
LIMA1-215ENST00000552823 C8orf87E5RJ46 101 aa3.21□□□□□ -1.9
LIMA1-215ENST00000552823 KMT2CQ8NEZ4 4911 aaKnown RBP3.21□□□□□ -1.9
LIMA1-215ENST00000552823 LCE6AA0A183 80 aa3.2□□□□□ -1.9
LIMA1-215ENST00000552823 CHKB-CPT1BH3BT56 60 aa3.2□□□□□ -1.9
LIMA1-215ENST00000552823 KRTAP1-4P0C5Y4 121 aa3.2□□□□□ -1.9
LIMA1-215ENST00000552823 ALMS1Q8TCU4 4167 aa3.19□□□□□ -1.9
LIMA1-215ENST00000552823 SPTSSBQ8NFR3 76 aa3.19□□□□□ -1.9
LIMA1-215ENST00000552823 TP53AIP1Q9HCN2 124 aa3.19□□□□□ -1.9
LIMA1-215ENST00000552823 LINC00304Q8N9R0 145 aa3.19□□□□□ -1.9
LIMA1-215ENST00000552823 Q6ZSA8 131 aa3.18□□□□□ -1.9
LIMA1-215ENST00000552823 Q8N1X5 172 aa3.18□□□□□ -1.9
LIMA1-215ENST00000552823 LRP1Q07954 4544 aaKnown RBP3.17□□□□□ -1.9
LIMA1-215ENST00000552823 HRES1P13985 223 aa3.17□□□□□ -1.9
LIMA1-215ENST00000552823 A6NED7 52 aa3.16□□□□□ -1.9
LIMA1-215ENST00000552823 CYP4F30PQ9H0H9 118 aa3.16□□□□□ -1.9
LIMA1-215ENST00000552823 LIMD2Q9BT23 127 aa3.16□□□□□ -1.9
LIMA1-215ENST00000552823 IGLV7-46A0A075B6I9 117 aa3.15□□□□□ -1.9
LIMA1-215ENST00000552823 APOBP04114 4563 aaKnown RBP3.15□□□□□ -1.91
LIMA1-215ENST00000552823 H3BPC8 53 aa3.15□□□□□ -1.91
LIMA1-215ENST00000552823 PKD1P98161 4303 aa3.15□□□□□ -1.91
LIMA1-215ENST00000552823 C7orf65Q6ZTY9 151 aa3.14□□□□□ -1.91
LIMA1-215ENST00000552823 LOC101927531A0A1B0GV80 90 aa3.13□□□□□ -1.91
LIMA1-215ENST00000552823 KIAA1109Q2LD37 5005 aa3.13□□□□□ -1.91
LIMA1-215ENST00000552823 ASB16-AS1Q495Z4 193 aa3.13□□□□□ -1.91
LIMA1-215ENST00000552823 SPANXA2-OT1Q8N9U9 137 aa3.13□□□□□ -1.91
LIMA1-215ENST00000552823 Q5VV11 94 aa3.12□□□□□ -1.91
LIMA1-215ENST00000552823 Q1T7F1 81 aa3.11□□□□□ -1.91
LIMA1-215ENST00000552823 FAT3Q8TDW7 4589 aa3.11□□□□□ -1.91
LIMA1-215ENST00000552823 ACYP2P14621 99 aa3.1□□□□□ -1.91
LIMA1-215ENST00000552823 RYR3Q15413 4870 aa3.1□□□□□ -1.91
LIMA1-215ENST00000552823 SPINK7P58062 85 aa3.1□□□□□ -1.91
LIMA1-215ENST00000552823 RYR2Q92736 4967 aa3.1□□□□□ -1.91
LIMA1-215ENST00000552823 Q5VSD8 79 aa3.09□□□□□ -1.91
LIMA1-215ENST00000552823 RYR1P21817 5038 aa3.09□□□□□ -1.91
LIMA1-215ENST00000552823 A0A1B0GVY2 172 aa3.09□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP16-1A8MUX0 517 aa3.09□□□□□ -1.92
LIMA1-215ENST00000552823 LOC100996750A0A140TA64 210 aa3.08□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP4-6Q9BYQ5 205 aa3.08□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP21-3Q3LHN1 58 aa3.08□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP13-3Q3SY46 172 aa3.08□□□□□ -1.92
LIMA1-215ENST00000552823 Q75L30 129 aa3.07□□□□□ -1.92
LIMA1-215ENST00000552823 KTN1-AS1Q86SY8 53 aa3.07□□□□□ -1.92
LIMA1-215ENST00000552823 LCA10Q71F78 164 aa3.06□□□□□ -1.92
LIMA1-215ENST00000552823 A0A1B0GU69 56 aa3.06□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP17-1Q9BYP8 105 aa3.04□□□□□ -1.92
LIMA1-215ENST00000552823 DMAC1Q96GE9 116 aa3.03□□□□□ -1.92
LIMA1-215ENST00000552823 KRTAP10-4P60372 401 aaPredicted RBP3.03□□□□□ -1.92
LIMA1-215ENST00000552823 LINC01558Q9Y6Z2 57 aa3.03□□□□□ -1.92
LIMA1-215ENST00000552823 ATP11AUNQ6ZP68 121 aa3.01□□□□□ -1.93
LIMA1-215ENST00000552823 EPPK1P58107 5090 aaKnown RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms